Examples with ObservableList javafx.collections.ObservableList used on opensource projects

Example 26 with ObservableList

use of javafx.collections.ObservableList in project dolphin-platform by canoo.

the class LogClientUtil method createObservableListFromLocalCache.

public static BoundLogList<LogMessage> createObservableListFromLocalCache() {
    final ObservableList<LogMessage> list = FXCollections.observableArrayList(DolphinLoggerFactory.getLogCache());
    final Subscription subscription = DolphinLoggerFactory.addListener(l -> {
        final List<LogMessage> currentCache = Collections.unmodifiableList(DolphinLoggerFactory.getLogCache());
        Platform.runLater(() -> {
            final List<LogMessage> toRemove = list.stream().filter(e -> !currentCache.contains(l)).collect(Collectors.toList());
            list.removeAll(toRemove);
            final List<LogMessage> toAdd = currentCache.stream().filter(e -> !list.contains(e)).collect(Collectors.toList());
            list.addAll(toAdd);
        });
    });
    return new BoundLogList(subscription, list);
}

Example 27 with ObservableList

use of javafx.collections.ObservableList in project jvarkit by lindenb.

the class IgvReview method start.

@Override
public void start(final Stage stage) throws Exception {
    stage.setTitle(getClass().getSimpleName());
    Predicate<VariantContext> ctxFilter;
    Map<String, String> params = super.getParameters().getNamed();
    if (params.containsKey("--filter")) {
        ctxFilter = JexlVariantPredicate.create(params.get("--filter"));
    } else {
        ctxFilter = V -> true;
    }
    final List<String> args = super.getParameters().getUnnamed();
    final File configFile;
    if (args.isEmpty()) {
        final FileChooser fc = new FileChooser();
        final String lastDirStr = preferences.get(LAST_USED_DIR_KEY, null);
        if (lastDirStr != null && !lastDirStr.isEmpty()) {
            fc.setInitialDirectory(new File(lastDirStr));
        }
        fc.getExtensionFilters().addAll(Collections.singletonList(new FileChooser.ExtensionFilter("Config file", "*.config", "*.cfg", "*.list")));
        configFile = fc.showOpenDialog(stage);
    } else if (args.size() == 1) {
        configFile = new File(args.get(0));
    } else {
        configFile = null;
    }
    if (configFile == null || !configFile.exists()) {
        JfxUtils.dialog().cause("Illegal number of arguments or file doesn't exists.").show(stage);
        Platform.exit();
        return;
    }
    if (configFile.isFile() && configFile.getParentFile() != null) {
        this.preferences.put(LAST_USED_DIR_KEY, configFile.getParentFile().getPath());
    }
    final List<String> configLines = Files.readAllLines(configFile.toPath());
    final Predicate<String> ignoreComment = (S) -> !S.startsWith("#");
    final Predicate<String> predVcf = S -> S.endsWith(".vcf") || S.endsWith(".vcf.gz");
    if (configLines.stream().filter(ignoreComment).filter(predVcf).count() != 1) {
        JfxUtils.dialog().cause("Found more than one vcf file in " + configFile).show(stage);
        Platform.exit();
        return;
    }
    final File vcfFile = configLines.stream().filter(ignoreComment).filter(predVcf).map(S -> new File(S)).findFirst().get();
    LOG.info("Opening vcf file and loading in memory");
    VCFFileReader vfr = null;
    CloseableIterator<VariantContext> iter = null;
    final Set<String> sampleNames;
    try {
        this.variants.clear();
        vfr = new VCFFileReader(vcfFile, false);
        this.vcfHeader = vfr.getFileHeader();
        sampleNames = new HashSet<>(this.vcfHeader.getSampleNamesInOrder());
        if (sampleNames.isEmpty()) {
            JfxUtils.dialog().cause("No Genotypes in " + vcfFile).show(stage);
            Platform.exit();
            return;
        }
        iter = vfr.iterator();
        this.variants.addAll(iter.stream().filter(ctxFilter).filter(CTX -> CTX.isVariant()).collect(Collectors.toList()));
    } catch (final Exception err) {
        JfxUtils.dialog().cause(err).show(stage);
        Platform.exit();
        return;
    } finally {
        CloserUtil.close(iter);
        CloserUtil.close(vfr);
    }
    if (this.variants.isEmpty()) {
        JfxUtils.dialog().cause("No Variants").show(stage);
        Platform.exit();
        return;
    }
    final SAMSequenceDictionary dict = this.vcfHeader.getSequenceDictionary();
    if (dict == null || dict.isEmpty()) {
        JfxUtils.dialog().cause(JvarkitException.VcfDictionaryMissing.getMessage(vcfFile.getPath())).show(stage);
        Platform.exit();
        return;
    }
    final SamReaderFactory srf = SamReaderFactory.makeDefault().validationStringency(ValidationStringency.LENIENT);
    configLines.stream().filter(ignoreComment).filter(S -> S.endsWith(".bam")).map(S -> new File(S)).forEach(F -> {
        final SamReader samIn = srf.open(F);
        final SAMFileHeader header = samIn.getFileHeader();
        CloserUtil.close(samIn);
        String sample = null;
        for (final SAMReadGroupRecord rg : header.getReadGroups()) {
            String s = rg.getSample();
            if (s == null)
                continue;
            if (sample == null) {
                sample = s;
            } else if (!sample.equals(s)) {
                JfxUtils.dialog().cause("Two samples in " + F).show(stage);
                Platform.exit();
                return;
            }
        }
        if (sample == null) {
            JfxUtils.dialog().cause("No sample in " + F + ". Ignoring").show(stage);
            return;
        }
        if (!sampleNames.contains(sample)) {
            JfxUtils.dialog().cause("Not in VCF header " + sample + " / " + F + ". Ignoring").show(stage);
            return;
        }
        this.sample2bamFile.put(sample, F);
    });
    if (this.sample2bamFile.isEmpty()) {
        JfxUtils.dialog().cause("No valid bam file in " + configFile).show(stage);
        return;
    }
    sampleNames.retainAll(this.sample2bamFile.keySet());
    if (sampleNames.isEmpty()) {
        JfxUtils.dialog().cause("No Sample associated to bam").show(stage);
        return;
    }
    ObservableList<VariantAndGenotype> genotypes = FXCollections.observableArrayList(this.variants.stream().flatMap(CTX -> CTX.getGenotypes().stream().filter(G -> sampleNames.contains(G.getSampleName())).map(G -> new VariantAndGenotype(CTX, G))).collect(Collectors.toList()));
    if (genotypes.isEmpty()) {
        JfxUtils.dialog().cause("No Genotype to show").show(stage);
        return;
    }
    Menu menu = new Menu("File");
    MenuItem menuItem = new MenuItem("Save as...");
    menuItem.setOnAction(AE -> {
        saveVariantsAs(stage);
    });
    menu.getItems().add(menuItem);
    menuItem = new MenuItem("Save");
    menuItem.setOnAction(AE -> {
        if (this.saveAsFile != null) {
            saveVariants(stage, this.saveAsFile);
        } else {
            saveVariantsAs(stage);
        }
    });
    menu.getItems().add(menuItem);
    menu.getItems().add(new SeparatorMenuItem());
    menuItem = new MenuItem("Quit");
    menuItem.setOnAction(AE -> {
        Platform.exit();
    });
    menu.getItems().add(menuItem);
    MenuBar bar = new MenuBar(menu);
    this.genotypeTable = new TableView<>(genotypes);
    this.genotypeTable.getColumns().add(makeColumn("CHROM", G -> G.ctx.getContig()));
    this.genotypeTable.getColumns().add(makeColumn("POS", G -> G.ctx.getStart()));
    this.genotypeTable.getColumns().add(makeColumn("ID", G -> G.ctx.getID()));
    this.genotypeTable.getColumns().add(makeColumn("REF", G -> G.ctx.getReference().getDisplayString()));
    this.genotypeTable.getColumns().add(makeColumn("ALT", G -> G.ctx.getAlternateAlleles().stream().map(A -> A.getDisplayString()).collect(Collectors.joining(","))));
    this.genotypeTable.getColumns().add(makeColumn("Sample", G -> G.g.getSampleName()));
    this.genotypeTable.getColumns().add(makeColumn("Type", G -> G.g.getType().name()));
    this.genotypeTable.getColumns().add(makeColumn("Alleles", G -> G.g.getAlleles().stream().map(A -> A.getDisplayString()).collect(Collectors.joining(","))));
    TableColumn<VariantAndGenotype, String> reviewCol = new TableColumn<>("Review");
    reviewCol.setCellValueFactory(C -> C.getValue().getReviewProperty());
    reviewCol.setCellFactory(TextFieldTableCell.forTableColumn());
    reviewCol.setOnEditCommit((E) -> {
        int y = E.getTablePosition().getRow();
        this.genotypeTable.getItems().get(y).setReview(E.getNewValue());
    });
    reviewCol.setEditable(true);
    this.genotypeTable.getColumns().add(reviewCol);
    this.genotypeTable.getSelectionModel().cellSelectionEnabledProperty().set(true);
    this.genotypeTable.setEditable(true);
    final ContextMenu cm = new ContextMenu();
    MenuItem mi1 = new MenuItem("Menu 1");
    cm.getItems().add(mi1);
    MenuItem mi2 = new MenuItem("Menu 2");
    cm.getItems().add(mi2);
    this.genotypeTable.setOnMousePressed(event -> {
        if (event.isPrimaryButtonDown() && (event.getClickCount() == 3 || event.isShiftDown())) {
            moveIgvTo(stage, genotypeTable.getSelectionModel().getSelectedItem());
        } else if (event.isSecondaryButtonDown()) {
            cm.show(genotypeTable, event.getScreenX(), event.getScreenY());
        }
    });
    final BorderPane pane2 = new BorderPane(this.genotypeTable);
    pane2.setPadding(new Insets(10, 10, 10, 10));
    VBox vbox1 = new VBox(bar, pane2);
    final Scene scene = new Scene(vbox1, 500, 300);
    stage.setScene(scene);
    stage.show();
}

Example 28 with ObservableList

use of javafx.collections.ObservableList in project JavaFXLibrary by eficode.

the class ConvenienceKeywords method getTableColumnValues.

@RobotKeyword("Returns list of values of the given table column.\n\n" + "``locator`` is either a _query_ or _Object:Node_ for identifying the TableView element, see " + "`3. Locating or specifying UI elements`. \n\n" + "``column`` Integer value for the column")
@ArgumentNames({ "table", "column" })
public List<Object> getTableColumnValues(Object locator, int column) {
    try {
        TableView table = (TableView) objectToNode(locator);
        ObservableList items = table.getItems();
        List<Object> values = new ArrayList<>();
        TableColumn tableColumn = (TableColumn) table.getColumns().get(column);
        if (tableColumn.getText() != null)
            robotLog("INFO", "Getting values from column " + tableColumn.getText());
        else
            robotLog("INFO", "Getting values from column using index " + column);
        for (Object item : items) {
            Object value = tableColumn.getCellObservableValue(item).getValue();
            values.add(mapObject(value));
        }
        return values;
    } catch (IndexOutOfBoundsException e) {
        throw new JavaFXLibraryNonFatalException("Out of table bounds: " + e.getMessage());
    } catch (Exception e) {
        throw new JavaFXLibraryNonFatalException("Couldn't get column values: " + e.getMessage());
    }
}

Example 29 with ObservableList

use of javafx.collections.ObservableList in project financial by greatkendy123.

the class GDController method setTable_YSGu_data_first.

/**
 * 设置第一次股东原始股
 *
 * @time 2018年1月28日
 */
private void setTable_YSGu_data_first() {
    ObservableList<GDInputInfo> obList = FXCollections.observableArrayList();
    // 获取银河股东的利润
    Double yinheProfit = getYinheProfit();
    // 股东列表：除了银河股东
    if (tableYSGu.getItems() == null || tableYSGu.getItems().size() == 0 || StringUtil.isBlank(tableYSGu.getItems().get(0).getType())) {
        tableGDSum.getItems().stream().filter(info -> !info.getGudongName().contains("银河")).map(info -> new GDInputInfo(info.getGudongName(), "", "")).forEach(info -> {
            obList.add(info);
        });
        tableYSGu.setItems(obList);
        tableYSGu.refresh();
    }
    // 根据股东比例计算各股东的原始利润
    tableYSGu.getItems().forEach(info -> {
        if (!StringUtil.isAnyBlank(info.getType(), info.getRate()))
            info.setValue(NumUtil.digit0(NumUtil.getNumByPercent(info.getRate()) * yinheProfit));
        else {
            // info.setType("");
            // info.setRate("");
            info.setValue("");
        }
    });
    // 刷新表
    tableYSGu.refresh();
    // 缓存明细数据
    tableYSGu.getItems().forEach(info -> {
        GDDetailInfo entity = new GDDetailInfo(info.getType(), info.getValue());
        // 备注：此处的描述字段为实体的底薪
        entity.setSalary(info.getDescription());
        detailMap.put(info.getType(), entity);
    });
}

Example 30 with ObservableList

use of javafx.collections.ObservableList in project financial by greatkendy123.

the class LMController method setDynamicTableData.

private void setDynamicTableData(TableView table, String clubId, Map<String, List<LMSumInfo>> allClubSumMap) {
    List<LMSumInfo> list = allClubSumMap.get(clubId);
    if (list != null && list.size() > 0) {
        ObservableList obList = FXCollections.observableArrayList();
        for (LMSumInfo info : list) {
            obList.add(info);
        }
        table.setItems(obList);
    }
}