Examples with OMEXMLMetadataImpl loci.formats.ome.OMEXMLMetadataImpl used on opensource projects

Example 1 with OMEXMLMetadataImpl

use of loci.formats.ome.OMEXMLMetadataImpl in project bioformats by openmicroscopy.

the class OMEXMLServiceImpl method createOMEXMLMetadata.

/**
 * @see OMEXMLService#createOMEXMLMetadata(java.lang.String, java.lang.String)
 */
@Override
public OMEXMLMetadata createOMEXMLMetadata(String xml, String version) throws ServiceException {
    if (xml != null) {
        xml = XMLTools.sanitizeXML(xml);
    }
    OMEXMLMetadataRoot ome = xml == null ? null : createRoot(transformToLatestVersion(xml));
    OMEXMLMetadata meta = new OMEXMLMetadataImpl();
    if (ome != null)
        meta.setRoot(ome);
    return meta;
}

Example 2 with OMEXMLMetadataImpl

use of loci.formats.ome.OMEXMLMetadataImpl in project bioformats by openmicroscopy.

the class SPWModelReaderTest method testSetId.

@Test
public void testSetId() throws Exception {
    reader = new MinMaxCalculator(new ChannelSeparator(new ChannelFiller(new ImageReader())));
    metadata = new OMEXMLMetadataImpl();
    reader.setMetadataStore(metadata);
    reader.setId(temporaryFile.getAbsolutePath());
}

Example 3 with OMEXMLMetadataImpl

use of loci.formats.ome.OMEXMLMetadataImpl in project bioformats by openmicroscopy.

the class SPWModelReaderTest method testSetIdWithNoLightSources.

@Test
public void testSetIdWithNoLightSources() throws Exception {
    readerWithNoLightSources = new MinMaxCalculator(new ChannelSeparator(new ChannelFiller(new ImageReader())));
    metadataWithNoLightSources = new OMEXMLMetadataImpl();
    readerWithNoLightSources.setMetadataStore(metadataWithNoLightSources);
    readerWithNoLightSources.setId(temporaryFileWithNoLightSources.getAbsolutePath());
}

Example 4 with OMEXMLMetadataImpl

use of loci.formats.ome.OMEXMLMetadataImpl in project bioformats by openmicroscopy.

the class BaseModelNoBinDataReaderTest method testSetId.

@Test
public void testSetId() throws Exception {
    reader = new MinMaxCalculator(new ChannelSeparator(new ChannelFiller(new ImageReader())));
    metadata = new OMEXMLMetadataImpl();
    reader.setMetadataStore(metadata);
    reader.setId(temporaryFile.getAbsolutePath());
}

Example 5 with OMEXMLMetadataImpl

use of loci.formats.ome.OMEXMLMetadataImpl in project bioformats by openmicroscopy.

the class GetLightSourceTypeTest method setUp.

@BeforeClass
public void setUp() throws Exception {
    metadata = new OMEXMLMetadataImpl();
    OMEXMLMetadataRoot ome = new OMEXMLMetadataRoot();
    Instrument instrument = new Instrument();
    instrument.addLightSource(new Arc());
    instrument.addLightSource(new Filament());
    instrument.addLightSource(new Laser());
    instrument.addLightSource(new LightEmittingDiode());
    ome.addInstrument(instrument);
    metadata.setRoot(ome);
}