Examples with Laser ome.xml.model.Laser used on opensource projects

Example 1 with Laser

use of ome.xml.model.Laser in project bioformats by openmicroscopy.

the class InOutCurrentTest method testValidLaserNode.

@Test(dependsOnMethods = { "testValidInstrumentNode" }, enabled = false)
public void testValidLaserNode() {
    Laser laser = (Laser) ome.getInstrument(0).getLightSource(0);
    assertNotNull(laser);
    assertEquals(LIGHTSOURCE_LASER_ID, laser.getID());
    assertEquals(LIGHTSOURCE_LASER_MODEL, laser.getModel());
    assertEquals(LIGHTSOURCE_LASER_POWER, laser.getPower().value(UNITS.MILLIWATT).doubleValue());
    assertEquals(LASER_TYPE, laser.getType());
}

Example 2 with Laser

use of ome.xml.model.Laser in project bioformats by openmicroscopy.

the class PumpWithLightSourceSettingsTest method setUp.

@BeforeClass
public void setUp() throws Exception {
    Instrument instrument = new Instrument();
    instrument.setID("Instrument:0");
    // Add a Laser with an Arc pump
    Laser laser = new Laser();
    laser.setID("Laser:0");
    Arc pump = new Arc();
    pump.setID("Arc:0");
    laser.linkPump(pump);
    instrument.addLightSource(laser);
    instrument.addLightSource(pump);
    ome.addInstrument(instrument);
    // Add an Image/Pixels with a LightSourceSettings reference to the Pump
    // on one of its channels.
    Image image = new Image();
    image.setID("Image:0");
    Pixels pixels = new Pixels();
    pixels.setID("Pixels:0");
    Channel channel = new Channel();
    channel.setID("Channel:0");
    LightSourceSettings settings = new LightSourceSettings();
    settings.setID("Arc:0");
    channel.setLightSourceSettings(settings);
    pixels.addChannel(channel);
    image.setPixels(pixels);
    ome.addImage(image);
}

Example 3 with Laser

use of ome.xml.model.Laser in project bioformats by openmicroscopy.

the class SPWModelMock method makeInstrument.

private Instrument makeInstrument(boolean makeLightSources) {
    // Create <Instrument/>
    Instrument instrument = new Instrument();
    instrument.setID(INSTRUMENT_ID);
    // Create <Detector/> under <Instrument/>
    Detector detector = new Detector();
    detector.setID(DETECTOR_ID);
    detector.setModel(DETECTOR_MODEL);
    instrument.addDetector(detector);
    if (makeLightSources) {
        // Create <Laser/> under <Instrument/>
        Laser laser = new Laser();
        laser.setID(LIGHTSOURCE_LASER_ID);
        laser.setModel(LIGHTSOURCE_LASER_MODEL);
        laser.setType(LASER_TYPE);
        laser.setPower(new Power(LIGHTSOURCE_LASER_POWER, UNITS.MILLIWATT));
        // with a <Pump/>
        Laser laserPump = new Laser();
        laserPump.setID(LIGHTSOURCE_PUMP_ID);
        laserPump.setModel(LIGHTSOURCE_PUMP_MODEL);
        laserPump.setType(LASER_TYPE);
        laserPump.setPower(new Power(LIGHTSOURCE_PUMP_POWER, UNITS.MILLIWATT));
        laser.linkPump(laserPump);
        instrument.addLightSource(laser);
        instrument.addLightSource(laserPump);
        // Create <Arc/> under <Instrument/>
        Arc arc = new Arc();
        arc.setID(LIGHTSOURCE_ARC_ID);
        arc.setModel(LIGHTSOURCE_ARC_MODEL);
        arc.setType(ARC_TYPE);
        arc.setPower(new Power(LIGHTSOURCE_ARC_POWER, UNITS.MILLIWATT));
        instrument.addLightSource(arc);
        // Create <Filament/> under <Instrument/>
        Filament filament = new Filament();
        filament.setID(LIGHTSOURCE_FILAMENT_ID);
        filament.setModel(LIGHTSOURCE_FILAMENT_MODEL);
        filament.setType(FILAMENT_TYPE);
        filament.setPower(new Power(LIGHTSOURCE_FILAMENT_POWER, UNITS.MILLIWATT));
        instrument.addLightSource(filament);
        // Create <LightEmittingDiode/> under <Instrument/>
        LightEmittingDiode led = new LightEmittingDiode();
        led.setID(LIGHTSOURCE_LED_ID);
        led.setModel(LIGHTSOURCE_LED_MODEL);
        led.setPower(new Power(LIGHTSOURCE_LED_POWER, UNITS.MILLIWATT));
        instrument.addLightSource(led);
    }
    // Create <Dichroic/> under <Instrument/>
    Dichroic dichroic = new Dichroic();
    dichroic.setID(DICHROIC_ID);
    dichroic.setSerialNumber(DICHROIC_SN);
    // Create <FilterSet/> under <Dichroic/>
    FilterSet filterSet = new FilterSet();
    filterSet.setID(FILTERSET_ID);
    filterSet.setLotNumber(FILTERSET_LOT);
    filterSet.linkDichroic(dichroic);
    Filter emFilter = new Filter();
    Filter exFilter = new Filter();
    // Create <Objective/> under <Instrument/>
    Objective objective = new Objective();
    objective.setID(OBJECTIVE_ID);
    objective.setModel(OBJECTIVE_MODEL);
    emFilter.setID(EM_FILTER_ID);
    emFilter.setType(EM_FILTER_TYPE);
    exFilter.setID(EX_FILTER_ID);
    exFilter.setType(EX_FILTER_TYPE);
    instrument.addFilter(emFilter);
    instrument.addFilter(exFilter);
    instrument.addObjective(objective);
    filterSet.linkEmissionFilter(emFilter);
    filterSet.linkExcitationFilter(exFilter);
    filterSet.linkDichroic(dichroic);
    instrument.addFilterSet(filterSet);
    instrument.addDichroic(dichroic);
    return instrument;
}

Example 4 with Laser

use of ome.xml.model.Laser in project bioformats by openmicroscopy.

the class GetLightSourceTypeTest method setUp.

@BeforeClass
public void setUp() throws Exception {
    metadata = new OMEXMLMetadataImpl();
    OMEXMLMetadataRoot ome = new OMEXMLMetadataRoot();
    Instrument instrument = new Instrument();
    instrument.addLightSource(new Arc());
    instrument.addLightSource(new Filament());
    instrument.addLightSource(new Laser());
    instrument.addLightSource(new LightEmittingDiode());
    ome.addInstrument(instrument);
    metadata.setRoot(ome);
}

Example 5 with Laser

use of ome.xml.model.Laser in project bioformats by openmicroscopy.

the class InOutCurrentTest method testValidPumpNode.

@Test(dependsOnMethods = { "testValidLaserNode" }, enabled = false)
public void testValidPumpNode() {
    Laser laser = (Laser) ome.getInstrument(0).getLightSource(0);
    Laser laserPump = (Laser) ome.getInstrument(0).getLightSource(1);
    assertNotNull(laserPump);
    assertEquals(LIGHTSOURCE_PUMP_ID, laserPump.getID());
    assertEquals(LIGHTSOURCE_PUMP_MODEL, laserPump.getModel());
    assertEquals(LIGHTSOURCE_PUMP_POWER, laserPump.getPower().value(UNITS.MILLIWATT).doubleValue());
    assertEquals(LASER_TYPE, laserPump.getType());
    assertEquals(laser.getLinkedPump(), laserPump);
}