Examples with DefaultColumn net.imagej.table.DefaultColumn used on opensource projects

Example 1 with DefaultColumn

use of net.imagej.table.DefaultColumn in project imagej-omero by imagej.

the class UploadTableTest method testByteArrayTable.

@Test
public void testByteArrayTable() throws ServerError, PermissionDeniedException, CannotCreateSessionException, ExecutionException, DSOutOfServiceException, DSAccessException {
    final GenericTable table = new DefaultGenericTable();
    final DefaultColumn<ByteArray> ij0 = new DefaultColumn<>(ByteArray.class);
    final DefaultColumn<ByteArray> ij1 = new DefaultColumn<>(ByteArray.class);
    ij0.add(new ByteArray(new byte[] { -128, 127 }));
    ij0.add(new ByteArray(new byte[] { 0, 10 }));
    ij1.add(new ByteArray(new byte[] { 112, 42 }));
    ij1.add(new ByteArray(new byte[] { -13, -84 }));
    table.add(ij0);
    table.add(ij1);
    // Create expectations
    setUpMethodCalls();
    final long id = service.uploadTable(credentials, "table", table, 0);
    assertEquals(id, -1);
    // NB: Can only capture in a Verifications block
    new Verifications() {

        {
            TableData td;
            tablesFacility.addTable((SecurityContext) any, (ImageData) any, anyString, td = withCapture());
            tableEquals(table, td, Long[].class);
        }
    };
}

Example 2 with DefaultColumn

use of net.imagej.table.DefaultColumn in project imagej-omero by imagej.

the class DownloadTableTest method downloadMixedTable.

@Test
@SuppressWarnings("unchecked")
public void downloadMixedTable() throws PermissionDeniedException, CannotCreateSessionException, ServerError, DSOutOfServiceException, ExecutionException, DSAccessException {
    // / Setup OMERO data structures
    final TableDataColumn[] tdc = new TableDataColumn[] { new TableDataColumn("Header 1", 0, String.class), new TableDataColumn("Header 2", 1, Boolean.class), new TableDataColumn("Header 3", 2, Double[].class), new TableDataColumn("Header 4", 3, Long.class) };
    final Object[][] data = new Object[4][];
    data[0] = new String[] { "abc", "123", "hi!" };
    data[1] = new Boolean[] { false, true, false };
    data[2] = new Double[][] { { 0.125, 3879123.5, -93.25 }, { 0d, -123353.03125, -5.5 }, { 100.25, 0.125, -9000.5 } };
    data[3] = new Long[] { -9028131908l, 0l, 12l };
    final TableData table = new TableData(tdc, data);
    table.setNumberOfRows(3);
    // Create expectations
    setUpMethodCalls(table);
    final Table<?, ?> imageJTable = ((DefaultOMEROService) service).downloadTable(credentials, 0);
    // Tests
    assertTrue(GenericTable.class.isInstance(imageJTable));
    assertTrue(DefaultColumn.class.isInstance(imageJTable.get(0)));
    assertTrue(imageJTable.get(0).getType() == String.class);
    assertTrue(BoolColumn.class.isInstance(imageJTable.get(1)));
    assertTrue(DefaultColumn.class.isInstance(imageJTable.get(2)));
    assertTrue(imageJTable.get(2).getType() == DoubleArray.class);
    assertTrue(LongColumn.class.isInstance(imageJTable.get(3)));
    assertEquals(imageJTable.getColumnCount(), 4);
    assertEquals(imageJTable.getRowCount(), 3);
    assertEquals(imageJTable.getColumnHeader(0), "Header 1");
    assertEquals(imageJTable.getColumnHeader(1), "Header 2");
    assertEquals(imageJTable.getColumnHeader(2), "Header 3");
    assertEquals(imageJTable.getColumnHeader(3), "Header 4");
    for (int r = 0; r < imageJTable.getRowCount(); r++) assertEquals(data[0][r], ((DefaultColumn<String>) imageJTable.get(0)).get(r));
    for (int r = 0; r < imageJTable.getRowCount(); r++) assertEquals(data[1][r], ((BoolColumn) imageJTable.get(1)).getValue(r));
    for (int r = 0; r < imageJTable.getRowCount(); r++) assertArrayEquals((Double[]) data[2][r], ((DefaultColumn<DoubleArray>) imageJTable.get(2)).get(r).toArray());
    for (int r = 0; r < imageJTable.getRowCount(); r++) assertEquals(data[3][r], ((LongColumn) imageJTable.get(3)).getValue(r));
}

Example 3 with DefaultColumn

use of net.imagej.table.DefaultColumn in project imagej-omero by imagej.

the class TableUtils method populateArrayColumn.

// -- Helper methods --
@SuppressWarnings("unchecked")
private static void populateArrayColumn(final DefaultColumn<?> col, final Object[] data) {
    if (col.getType().equals(FloatArray.class)) {
        for (int i = 0; i < data.length; i++) {
            final Float[] f = (Float[]) data[i];
            ((DefaultColumn<FloatArray>) col).add(i, new FloatArray(ArrayUtils.toPrimitive(f)));
        }
    } else if (col.getType().equals(LongArray.class)) {
        for (int i = 0; i < data.length; i++) {
            final Long[] f = (Long[]) data[i];
            ((DefaultColumn<LongArray>) col).add(i, new LongArray(ArrayUtils.toPrimitive(f)));
        }
    } else if (col.getType().equals(DoubleArray.class)) {
        for (int i = 0; i < data.length; i++) {
            final Double[] f = (Double[]) data[i];
            ((DefaultColumn<DoubleArray>) col).add(i, new DoubleArray(ArrayUtils.toPrimitive(f)));
        }
    }
}

Example 4 with DefaultColumn

use of net.imagej.table.DefaultColumn in project imagej-omero by imagej.

the class UploadTableTest method testDoubleArrayTable.

@Test
public void testDoubleArrayTable() throws ServerError, PermissionDeniedException, CannotCreateSessionException, ExecutionException, DSOutOfServiceException, DSAccessException {
    final GenericTable table = new DefaultGenericTable();
    final DefaultColumn<DoubleArray> ij0 = new DefaultColumn<>(DoubleArray.class, "H1");
    final DefaultColumn<DoubleArray> ij1 = new DefaultColumn<>(DoubleArray.class, "H2");
    ij0.add(new DoubleArray(new double[] { 0.5, 0.25, 0.125 }));
    ij1.add(new DoubleArray(new double[] { -0.125, -0.0625, 0.03125 }));
    table.add(ij0);
    table.add(ij1);
    // Create expectations
    setUpMethodCalls();
    final long id = service.uploadTable(credentials, "table", table, 0);
    assertEquals(id, -1);
    // NB: Can only capture in a Verifications block
    new Verifications() {

        {
            TableData td;
            tablesFacility.addTable((SecurityContext) any, (ImageData) any, anyString, td = withCapture());
            tableEquals(table, td, Double[].class);
        }
    };
}

Example 5 with DefaultColumn

use of net.imagej.table.DefaultColumn in project imagej-omero by imagej.

the class UploadTableTest method testMixedTable.

@Test
public void testMixedTable() throws ServerError, PermissionDeniedException, CannotCreateSessionException, ExecutionException, DSOutOfServiceException, DSAccessException {
    final GenericTable table = new DefaultGenericTable();
    final BoolColumn ijc0 = new BoolColumn("h0");
    final DoubleColumn ijc1 = new DoubleColumn("h1");
    final DefaultColumn<String> ijc2 = new DefaultColumn<>(String.class, "h2");
    final DefaultColumn<IntArray> ijc3 = new DefaultColumn<>(IntArray.class, "h3");
    final OMERORefColumn ijc4 = new OMERORefColumn("h4", OMERORef.ROI);
    ijc0.fill(new boolean[] { true, false });
    ijc1.fill(new double[] { 0.03125, -2134.5 });
    ijc2.add("abc");
    ijc2.add("123");
    ijc3.add(new IntArray(new int[] { 9012, 1294 }));
    ijc3.add(new IntArray(new int[] { -4123, -9 }));
    ijc4.fill(new long[] { 2314, 1234 });
    ijc4.setOriginalData(new Object[] { new ROIData(new RoiI(2314, true)), new ROIData(new RoiI(1234, true)) });
    table.add(ijc0);
    table.add(ijc1);
    table.add(ijc2);
    table.add(ijc3);
    table.add(ijc4);
    // Create expectations
    setUpMethodCalls();
    final long id = service.uploadTable(credentials, "table", table, 0);
    assertEquals(id, -1);
    // NB: Can only capture in a Verifications block
    new Verifications() {

        {
            TableData td;
            tablesFacility.addTable((SecurityContext) any, (ImageData) any, anyString, td = withCapture());
            tableEquals(table, td, Boolean.class, Double.class, String.class, Long[].class, ROIData.class);
        }
    };
}