Examples with TableDataColumn omero.gateway.model.TableDataColumn used on opensource projects

Example 1 with TableDataColumn

use of omero.gateway.model.TableDataColumn in project imagej-omero by imagej.

the class DownloadTableTest method downloadLongTable.

@Test
public void downloadLongTable() throws PermissionDeniedException, CannotCreateSessionException, ServerError, DSOutOfServiceException, ExecutionException, DSAccessException {
    // Setup OMERO data structures
    final TableDataColumn[] tdc = new TableDataColumn[] { new TableDataColumn("Header 1", 0, Long.class), new TableDataColumn("Header 2", 1, Long.class), new TableDataColumn("Header 3", 2, Long.class), new TableDataColumn("Header 4", 3, Long.class) };
    final Object[][] data = new Object[4][];
    data[0] = new Long[] { 0l, -9223372036854775808l, 9223372036854775807l };
    data[1] = new Long[] { 134l, 5415145l, 4775807l };
    data[2] = new Long[] { -1898l, -97234l, 75807l };
    data[3] = new Long[] { 19048l, -123l, 4l };
    final TableData table = new TableData(tdc, data);
    table.setNumberOfRows(3);
    // Create expectations
    setUpMethodCalls(table);
    final Table<?, ?> imageJTable = ((DefaultOMEROService) service).downloadTable(credentials, 0);
    // Tests
    assertTrue(LongTable.class.isInstance(imageJTable));
    assertEquals(imageJTable.getColumnCount(), 4);
    assertEquals(imageJTable.getRowCount(), 3);
    assertEquals(imageJTable.getColumnHeader(0), "Header 1");
    assertEquals(imageJTable.getColumnHeader(1), "Header 2");
    assertEquals(imageJTable.getColumnHeader(2), "Header 3");
    assertEquals(imageJTable.getColumnHeader(3), "Header 4");
    for (int r = 0; r < imageJTable.getRowCount(); r++) {
        for (int c = 0; c < imageJTable.getColumnCount(); c++) {
            assertEquals(data[c][r], imageJTable.get(c, r));
        }
    }
}

Example 2 with TableDataColumn

use of omero.gateway.model.TableDataColumn in project imagej-omero by imagej.

the class DownloadTableTest method downloadMixedTable.

@Test
@SuppressWarnings("unchecked")
public void downloadMixedTable() throws PermissionDeniedException, CannotCreateSessionException, ServerError, DSOutOfServiceException, ExecutionException, DSAccessException {
    // / Setup OMERO data structures
    final TableDataColumn[] tdc = new TableDataColumn[] { new TableDataColumn("Header 1", 0, String.class), new TableDataColumn("Header 2", 1, Boolean.class), new TableDataColumn("Header 3", 2, Double[].class), new TableDataColumn("Header 4", 3, Long.class) };
    final Object[][] data = new Object[4][];
    data[0] = new String[] { "abc", "123", "hi!" };
    data[1] = new Boolean[] { false, true, false };
    data[2] = new Double[][] { { 0.125, 3879123.5, -93.25 }, { 0d, -123353.03125, -5.5 }, { 100.25, 0.125, -9000.5 } };
    data[3] = new Long[] { -9028131908l, 0l, 12l };
    final TableData table = new TableData(tdc, data);
    table.setNumberOfRows(3);
    // Create expectations
    setUpMethodCalls(table);
    final Table<?, ?> imageJTable = ((DefaultOMEROService) service).downloadTable(credentials, 0);
    // Tests
    assertTrue(GenericTable.class.isInstance(imageJTable));
    assertTrue(DefaultColumn.class.isInstance(imageJTable.get(0)));
    assertTrue(imageJTable.get(0).getType() == String.class);
    assertTrue(BoolColumn.class.isInstance(imageJTable.get(1)));
    assertTrue(DefaultColumn.class.isInstance(imageJTable.get(2)));
    assertTrue(imageJTable.get(2).getType() == DoubleArray.class);
    assertTrue(LongColumn.class.isInstance(imageJTable.get(3)));
    assertEquals(imageJTable.getColumnCount(), 4);
    assertEquals(imageJTable.getRowCount(), 3);
    assertEquals(imageJTable.getColumnHeader(0), "Header 1");
    assertEquals(imageJTable.getColumnHeader(1), "Header 2");
    assertEquals(imageJTable.getColumnHeader(2), "Header 3");
    assertEquals(imageJTable.getColumnHeader(3), "Header 4");
    for (int r = 0; r < imageJTable.getRowCount(); r++) assertEquals(data[0][r], ((DefaultColumn<String>) imageJTable.get(0)).get(r));
    for (int r = 0; r < imageJTable.getRowCount(); r++) assertEquals(data[1][r], ((BoolColumn) imageJTable.get(1)).getValue(r));
    for (int r = 0; r < imageJTable.getRowCount(); r++) assertArrayEquals((Double[]) data[2][r], ((DefaultColumn<DoubleArray>) imageJTable.get(2)).get(r).toArray());
    for (int r = 0; r < imageJTable.getRowCount(); r++) assertEquals(data[3][r], ((LongColumn) imageJTable.get(3)).getValue(r));
}

Example 3 with TableDataColumn

use of omero.gateway.model.TableDataColumn in project imagej-omero by imagej.

the class DownloadTableTest method downloadDoubleTable.

@Test
public void downloadDoubleTable() throws PermissionDeniedException, CannotCreateSessionException, ServerError, DSOutOfServiceException, ExecutionException, DSAccessException {
    // Setup OMERO data structures
    final TableDataColumn[] tdc = new TableDataColumn[] { new TableDataColumn("Header 1", 0, Double.class), new TableDataColumn("Header 2", 1, Double.class) };
    final Object[][] data = new Object[2][];
    data[0] = new Double[] { 0.125, -0.5, 923014712408917.25, -241.03125, 0.0 };
    data[1] = new Double[] { 1002.125, 908082.5, 59871249.0625, -7.25, 4.5 };
    final TableData table = new TableData(tdc, data);
    table.setNumberOfRows(5);
    // Create expectations
    setUpMethodCalls(table);
    final Table<?, ?> imageJTable = ((DefaultOMEROService) service).downloadTable(credentials, 0);
    // Tests
    assertTrue(ResultsTable.class.isInstance(imageJTable));
    assertEquals(imageJTable.getColumnCount(), 2);
    assertEquals(imageJTable.getRowCount(), 5);
    assertEquals(imageJTable.getColumnHeader(0), "Header 1");
    assertEquals(imageJTable.getColumnHeader(1), "Header 2");
    for (int r = 0; r < imageJTable.getRowCount(); r++) {
        for (int c = 0; c < imageJTable.getColumnCount(); c++) {
            assertEquals((double) data[c][r], ((ResultsTable) imageJTable).get(c, r), 0);
        }
    }
}

Example 4 with TableDataColumn

use of omero.gateway.model.TableDataColumn in project imagej-omero by imagej.

the class DefaultOMEROService method convertOMEROTable.

@Override
public TableData convertOMEROTable(final Table<?, ?> imageJTable) {
    final TableDataColumn[] omeroColumns = new TableDataColumn[imageJTable.getColumnCount()];
    final Object[][] data = new Object[imageJTable.getColumnCount()][];
    for (int c = 0; c < imageJTable.getColumnCount(); c++) {
        omeroColumns[c] = TableUtils.createOMEROColumn(imageJTable.get(c), c);
        data[c] = TableUtils.populateOMEROColumn(imageJTable.get(c), convertService);
    }
    // Create table and attach to image
    final TableData omeroTable = new TableData(omeroColumns, data);
    omeroTable.setNumberOfRows(imageJTable.getRowCount());
    return omeroTable;
}

Example 5 with TableDataColumn

use of omero.gateway.model.TableDataColumn in project imagej-omero by imagej.

the class DefaultOMEROService method downloadTable.

@Override
public Table<?, ?> downloadTable(final OMEROCredentials credentials, final long tableID) throws ServerError, PermissionDeniedException, CannotCreateSessionException, ExecutionException, DSOutOfServiceException, DSAccessException {
    try (final OMEROSession session = new DefaultOMEROSession(credentials)) {
        final TablesFacility tableService = session.getGateway().getFacility(TablesFacility.class);
        final TableData table = tableService.getTable(session.getSecurityContext(), tableID, 0, Integer.MAX_VALUE - 1);
        final TableDataColumn[] omeroColumns = table.getColumns();
        final Object[][] data = table.getData();
        final Table<?, ?> imageJTable = TableUtils.createImageJTable(omeroColumns);
        imageJTable.setRowCount((int) table.getNumberOfRows());
        boolean colsCreated = false;
        if (!(imageJTable instanceof GenericTable)) {
            imageJTable.appendColumns(omeroColumns.length);
            colsCreated = true;
        }
        for (int i = 0; i < omeroColumns.length; i++) {
            if (!colsCreated) {
                final Column<?> imageJCol = TableUtils.createImageJColumn(omeroColumns[i]);
                TableUtils.populateImageJColumn(omeroColumns[i].getType(), data[omeroColumns[i].getIndex()], imageJCol);
                ((GenericTable) imageJTable).add(omeroColumns[i].getIndex(), imageJCol);
            } else {
                TableUtils.populateImageJColumn(omeroColumns[i].getType(), data[omeroColumns[i].getIndex()], imageJTable.get(i));
                imageJTable.get(i).setHeader(omeroColumns[i].getName());
            }
        }
        return imageJTable;
    }
}