Examples with FinalInterval net.imglib2.FinalInterval used on opensource projects

Example 6 with FinalInterval

use of net.imglib2.FinalInterval in project vcell by virtualcell.

the class LargestRegionSlice method run.

@Override
public void run() {
    int maxArea = 0;
    int zOfMaxArea = 0;
    for (int z = 0; z < data.dimension(2); z++) {
        FinalInterval interval = Intervals.createMinMax(0, 0, z, data.dimension(0) - 1, data.dimension(1) - 1, z);
        RandomAccessibleInterval<BitType> croppedRAI = ops.transform().crop(data, interval);
        IterableInterval<BitType> croppedII = Views.iterable(croppedRAI);
        Cursor<BitType> cursor = croppedII.cursor();
        int area = 0;
        while (cursor.hasNext()) {
            if (cursor.next().get()) {
                area++;
            }
        }
        if (area > maxArea) {
            maxArea = area;
            zOfMaxArea = z;
        }
    }
    FinalInterval interval = Intervals.createMinMax(0, 0, zOfMaxArea, data.dimension(0) - 1, data.dimension(1) - 1, zOfMaxArea);
    output = ops.transform().crop(data, interval);
}