use of org.akaza.openclinica.bean.admin.DeletedEventCRFBean in project OpenClinica by OpenClinica.
the class ExportExcelStudySubjectAuditLogServlet method processRequest.
@Override
public void processRequest() throws Exception {
StudySubjectDAO subdao = new StudySubjectDAO(sm.getDataSource());
SubjectDAO sdao = new SubjectDAO(sm.getDataSource());
AuditDAO adao = new AuditDAO(sm.getDataSource());
StudyEventDAO sedao = new StudyEventDAO(sm.getDataSource());
StudyEventDefinitionDAO seddao = new StudyEventDefinitionDAO(sm.getDataSource());
EventDefinitionCRFDAO edcdao = new EventDefinitionCRFDAO(sm.getDataSource());
EventCRFDAO ecdao = new EventCRFDAO(sm.getDataSource());
StudyDAO studydao = new StudyDAO(sm.getDataSource());
CRFDAO cdao = new CRFDAO(sm.getDataSource());
CRFVersionDAO cvdao = new CRFVersionDAO(sm.getDataSource());
StudySubjectBean studySubject = null;
SubjectBean subject = null;
ArrayList events = null;
ArrayList studySubjectAudits = new ArrayList();
ArrayList eventCRFAudits = new ArrayList();
ArrayList studyEventAudits = new ArrayList();
ArrayList allDeletedEventCRFs = new ArrayList();
ArrayList allEventCRFs = new ArrayList();
ArrayList allEventCRFItems = new ArrayList();
String attachedFilePath = Utils.getAttachedFilePath(currentStudy);
FormProcessor fp = new FormProcessor(request);
int studySubId = fp.getInt("id", true);
if (studySubId == 0) {
addPageMessage(respage.getString("please_choose_a_subject_to_view"));
forwardPage(Page.LIST_STUDY_SUBJECTS);
} else {
studySubject = (StudySubjectBean) subdao.findByPK(studySubId);
StudyBean study = (StudyBean) studydao.findByPK(studySubject.getStudyId());
// Check if this StudySubject would be accessed from the Current Study
if (studySubject.getStudyId() != currentStudy.getId()) {
if (currentStudy.getParentStudyId() > 0) {
addPageMessage(respage.getString("no_have_correct_privilege_current_study") + " " + respage.getString("change_active_study_or_contact"));
forwardPage(Page.MENU_SERVLET);
return;
} else {
// The SubjectStudy is not belong to currentstudy and current study is not a site.
Collection sites = studydao.findOlnySiteIdsByStudy(currentStudy);
if (!sites.contains(study.getId())) {
addPageMessage(respage.getString("no_have_correct_privilege_current_study") + " " + respage.getString("change_active_study_or_contact"));
forwardPage(Page.MENU_SERVLET);
return;
}
}
}
subject = (SubjectBean) sdao.findByPK(studySubject.getSubjectId());
/* Show both study subject and subject audit events together */
// Study subject value changed
Collection studySubjectAuditEvents = adao.findStudySubjectAuditEvents(studySubject.getId());
// integer values.
for (Iterator iterator = studySubjectAuditEvents.iterator(); iterator.hasNext(); ) {
AuditBean auditBean = (AuditBean) iterator.next();
if (auditBean.getAuditEventTypeId() == 3) {
auditBean.setOldValue(Status.get(Integer.parseInt(auditBean.getOldValue())).getName());
auditBean.setNewValue(Status.get(Integer.parseInt(auditBean.getNewValue())).getName());
}
}
studySubjectAudits.addAll(studySubjectAuditEvents);
// Global subject value changed
studySubjectAudits.addAll(adao.findSubjectAuditEvents(subject.getId()));
studySubjectAudits.addAll(adao.findStudySubjectGroupAssignmentAuditEvents(studySubject.getId()));
// Get the list of events
events = sedao.findAllByStudySubject(studySubject);
for (int i = 0; i < events.size(); i++) {
// Link study event definitions
StudyEventBean studyEvent = (StudyEventBean) events.get(i);
studyEvent.setStudyEventDefinition((StudyEventDefinitionBean) seddao.findByPK(studyEvent.getStudyEventDefinitionId()));
// Link event CRFs
studyEvent.setEventCRFs(ecdao.findAllByStudyEvent(studyEvent));
// Find deleted Event CRFs
List deletedEventCRFs = adao.findDeletedEventCRFsFromAuditEvent(studyEvent.getId());
allDeletedEventCRFs.addAll(deletedEventCRFs);
List eventCRFs = (List) adao.findAllEventCRFAuditEvents(studyEvent.getId());
allEventCRFs.addAll(eventCRFs);
List eventCRFItems = (List) adao.findAllEventCRFAuditEventsWithItemDataType(studyEvent.getId());
allEventCRFItems.addAll(eventCRFItems);
logger.info("deletedEventCRFs size[" + deletedEventCRFs.size() + "]");
logger.info("allEventCRFItems size[" + allEventCRFItems.size() + "]");
}
for (int i = 0; i < events.size(); i++) {
StudyEventBean studyEvent = (StudyEventBean) events.get(i);
studyEventAudits.addAll(adao.findStudyEventAuditEvents(studyEvent.getId()));
ArrayList eventCRFs = studyEvent.getEventCRFs();
for (int j = 0; j < eventCRFs.size(); j++) {
// Link CRF and CRF Versions
EventCRFBean eventCRF = (EventCRFBean) eventCRFs.get(j);
eventCRF.setCrfVersion((CRFVersionBean) cvdao.findByPK(eventCRF.getCRFVersionId()));
eventCRF.setCrf(cdao.findByVersionId(eventCRF.getCRFVersionId()));
// Get the event crf audits
eventCRFAudits.addAll(adao.findEventCRFAuditEventsWithItemDataType(eventCRF.getId()));
logger.info("eventCRFAudits size [" + eventCRFAudits.size() + "] eventCRF id [" + eventCRF.getId() + "]");
}
}
ItemDataDAO itemDataDao = new ItemDataDAO(sm.getDataSource());
for (Object o : eventCRFAudits) {
AuditBean ab = (AuditBean) o;
if (ab.getAuditTable().equalsIgnoreCase("item_data")) {
ItemDataBean idBean = (ItemDataBean) itemDataDao.findByPK(ab.getEntityId());
ab.setOrdinal(idBean.getOrdinal());
}
}
}
try {
WritableFont headerFormat = new WritableFont(WritableFont.ARIAL, 8, WritableFont.BOLD, false, UnderlineStyle.NO_UNDERLINE, Colour.BLUE2);
WritableCellFormat cellFormat = new WritableCellFormat();
cellFormat.setFont(headerFormat);
response.setContentType("application/vnd.ms-excel");
response.setHeader("Content-Disposition", "attachment; filename=export.xls");
WorkbookSettings wbSettings = new WorkbookSettings();
wbSettings.setLocale(new Locale("en", "EN"));
WritableWorkbook workbook = Workbook.createWorkbook(response.getOutputStream(), wbSettings);
int row = 0;
// Subject Information
workbook.createSheet("Subject Information", 0);
WritableSheet excelSheet = workbook.getSheet(0);
// Subject Summary
String[] excelRow = new String[] { "study_subject_ID", "secondary_subject_ID", "date_of_birth", "person_ID", "created_by", "status" };
for (int i = 0; i < excelRow.length; i++) {
Label label = new Label(i, row, ResourceBundleProvider.getResWord(excelRow[i]), cellFormat);
excelSheet.addCell(label);
}
row++;
excelRow = new String[] { studySubject.getLabel(), studySubject.getSecondaryLabel(), dateFormat(subject.getDateOfBirth()), subject.getUniqueIdentifier(), studySubject.getOwner().getName(), studySubject.getStatus().getName() };
for (int i = 0; i < excelRow.length; i++) {
Label label = new Label(i, row, ResourceBundleProvider.getResWord(excelRow[i]), cellFormat);
excelSheet.addCell(label);
}
row++;
row++;
// Subject Audit Events
excelRow = new String[] { "audit_event", "date_time_of_server", "user", "value_type", "old", "new" };
for (int i = 0; i < excelRow.length; i++) {
Label label = new Label(i, row, ResourceBundleProvider.getResWord(excelRow[i]), cellFormat);
excelSheet.addCell(label);
}
row++;
for (int j = 0; j < studySubjectAudits.size(); j++) {
AuditBean audit = (AuditBean) studySubjectAudits.get(j);
excelRow = new String[] { audit.getAuditEventTypeName(), dateTimeFormat(audit.getAuditDate()), audit.getUserName(), audit.getEntityName(), audit.getOldValue(), audit.getNewValue() };
for (int i = 0; i < excelRow.length; i++) {
Label label = new Label(i, row, ResourceBundleProvider.getResWord(excelRow[i]), cellFormat);
excelSheet.addCell(label);
}
row++;
}
row++;
// Study Events
excelRow = new String[] { "study_events", "location", "date", "occurrence_number" };
for (int i = 0; i < excelRow.length; i++) {
Label label = new Label(i, row, ResourceBundleProvider.getResWord(excelRow[i]), cellFormat);
excelSheet.addCell(label);
}
row++;
for (int j = 0; j < events.size(); j++) {
StudyEventBean event = (StudyEventBean) events.get(j);
if (event.getStartTimeFlag()) {
excelRow = new String[] { event.getStudyEventDefinition().getName(), event.getLocation(), dateTimeFormat(event.getDateStarted()), Integer.toString(event.getSampleOrdinal()) };
} else {
excelRow = new String[] { event.getStudyEventDefinition().getName(), event.getLocation(), dateFormat(event.getDateStarted()), Integer.toString(event.getSampleOrdinal()) };
}
for (int i = 0; i < excelRow.length; i++) {
Label label = new Label(i, row, ResourceBundleProvider.getResWord(excelRow[i]), cellFormat);
excelSheet.addCell(label);
}
row++;
}
autoSizeColumns(excelSheet);
int sheet = 0;
// Study Event Summary Looper
for (int eventCount = 0; eventCount < events.size(); eventCount++) {
row = 0;
sheet++;
StudyEventBean event = (StudyEventBean) events.get(eventCount);
workbook.createSheet(event.getStudyEventDefinition().getName().replace("/", ".") + "_" + event.getSampleOrdinal(), sheet);
excelSheet = workbook.getSheet(sheet);
Label label = null;
// Header
label = new Label(0, row, ResourceBundleProvider.getResWord("name"), cellFormat);
excelSheet.addCell(label);
label = new Label(1, row, event.getStudyEventDefinition().getName(), cellFormat);
excelSheet.addCell(label);
row++;
label = new Label(0, row, "Location");
excelSheet.addCell(label);
label = new Label(1, row, event.getLocation());
excelSheet.addCell(label);
row++;
label = new Label(0, row, "Start Date");
excelSheet.addCell(label);
if (event.getStartTimeFlag()) {
label = new Label(1, row, dateTimeFormat(event.getDateStarted()));
} else {
label = new Label(1, row, dateFormat(event.getDateStarted()));
}
excelSheet.addCell(label);
row++;
label = new Label(0, row, "Status");
excelSheet.addCell(label);
label = new Label(1, row, event.getSubjectEventStatus().getName());
excelSheet.addCell(label);
row++;
label = new Label(0, row, ResourceBundleProvider.getResWord("occurrence_number"));
excelSheet.addCell(label);
label = new Label(1, row, Integer.toString(event.getSampleOrdinal()));
excelSheet.addCell(label);
row++;
row++;
// End Header
// Audit for Deleted Event CRFs
excelRow = new String[] { "name", "version", "deleted_by", "delete_date" };
for (int i = 0; i < excelRow.length; i++) {
label = new Label(i, row, ResourceBundleProvider.getResWord(excelRow[i]), cellFormat);
excelSheet.addCell(label);
}
row++;
for (int j = 0; j < allDeletedEventCRFs.size(); j++) {
DeletedEventCRFBean deletedEventCRF = (DeletedEventCRFBean) allDeletedEventCRFs.get(j);
if (deletedEventCRF.getStudyEventId() == event.getId()) {
excelRow = new String[] { deletedEventCRF.getCrfName(), deletedEventCRF.getFormLayout(), deletedEventCRF.getDeletedBy(), dateFormat(deletedEventCRF.getDeletedDate()) };
for (int i = 0; i < excelRow.length; i++) {
label = new Label(i, row, ResourceBundleProvider.getResWord(excelRow[i]), cellFormat);
excelSheet.addCell(label);
}
row++;
}
}
row++;
row++;
// Audit Events for Study Event
excelRow = new String[] { "audit_event", "date_time_of_server", "user", "value_type", "old", "new" };
for (int i = 0; i < excelRow.length; i++) {
label = new Label(i, row, ResourceBundleProvider.getResWord(excelRow[i]), cellFormat);
excelSheet.addCell(label);
}
row++;
for (int j = 0; j < studyEventAudits.size(); j++) {
AuditBean studyEvent = (AuditBean) studyEventAudits.get(j);
if (studyEvent.getEntityId() == event.getId()) {
String getOld = studyEvent.getOldValue();
String oldValue = "";
if (getOld.equals("0"))
oldValue = "invalid";
else if (getOld.equals("1"))
oldValue = "scheduled";
else if (getOld.equals("2"))
oldValue = "not_scheduled";
else if (getOld.equals("3"))
oldValue = "data_entry_started";
else if (getOld.equals("4"))
oldValue = "completed";
else if (getOld.equals("5"))
oldValue = "stopped";
else if (getOld.equals("6"))
oldValue = "skipped";
else if (getOld.equals("7"))
oldValue = "locked";
else if (getOld.equals("8"))
oldValue = "signed";
else
oldValue = studyEvent.getOldValue();
String getNew = studyEvent.getNewValue();
String newValue = "";
if (getNew.equals("0"))
newValue = "invalid";
else if (getNew.equals("1"))
newValue = "scheduled";
else if (getNew.equals("2"))
newValue = "not_scheduled";
else if (getNew.equals("3"))
newValue = "data_entry_started";
else if (getNew.equals("4"))
newValue = "completed";
else if (getNew.equals("5"))
newValue = "removed";
else if (getNew.equals("6"))
newValue = "skipped";
else if (getNew.equals("7"))
newValue = "locked";
else if (getNew.equals("8"))
newValue = "signed";
else if (getNew.equals("9"))
newValue = "forzen";
else
newValue = studyEvent.getNewValue();
excelRow = new String[] { studyEvent.getAuditEventTypeName(), dateTimeFormat(studyEvent.getAuditDate()), studyEvent.getUserName(), studyEvent.getEntityName() + "(" + studyEvent.getOrdinal() + ")", oldValue, newValue };
for (int i = 0; i < excelRow.length; i++) {
label = new Label(i, row, ResourceBundleProvider.getResWord(excelRow[i]), cellFormat);
excelSheet.addCell(label);
}
row++;
}
}
row++;
row++;
// Event CRFs Audit Events
for (int j = 0; j < allEventCRFs.size(); j++) {
AuditBean auditBean = (AuditBean) allEventCRFs.get(j);
if (auditBean.getStudyEventId() == event.getId()) {
// Audit Events for Study Event
excelRow = new String[] { "name", "version", "date_interviewed", "interviewer_name", "owner" };
for (int i = 0; i < excelRow.length; i++) {
label = new Label(i, row, ResourceBundleProvider.getResWord(excelRow[i]), cellFormat);
excelSheet.addCell(label);
}
row++;
excelRow = new String[] { auditBean.getCrfName(), auditBean.getCrfVersionName(), dateFormat(auditBean.getDateInterviewed()), auditBean.getInterviewerName(), auditBean.getUserName() };
for (int i = 0; i < excelRow.length; i++) {
label = new Label(i, row, ResourceBundleProvider.getResWord(excelRow[i]), cellFormat);
excelSheet.addCell(label);
}
row++;
row++;
excelRow = new String[] { "audit_event", "date_time_of_server", "user", "value_type", "old", "new" };
for (int i = 0; i < excelRow.length; i++) {
label = new Label(i, row, ResourceBundleProvider.getResWord(excelRow[i]), cellFormat);
excelSheet.addCell(label);
}
row++;
row++;
for (int k = 0; k < allEventCRFItems.size(); k++) {
row--;
AuditBean eventCrfAudit = (AuditBean) allEventCRFItems.get(k);
if (eventCrfAudit.getStudyEventId() == event.getId() && eventCrfAudit.getEventCrfVersionId() == auditBean.getEventCrfVersionId()) {
String oldValue = "";
String newValue = "";
if (eventCrfAudit.getAuditEventTypeId() == 12 || eventCrfAudit.getEntityName().equals("Status")) {
String getOld = eventCrfAudit.getOldValue();
if (getOld.equals("0"))
oldValue = "invalid";
else if (getOld.equals("1"))
oldValue = "available";
else if (getOld.equals("2"))
oldValue = "unavailable";
else if (getOld.equals("3"))
oldValue = "private";
else if (getOld.equals("4"))
oldValue = "pending";
else if (getOld.equals("5"))
oldValue = "removed";
else if (getOld.equals("6"))
oldValue = "locked";
else if (getOld.equals("7"))
oldValue = "auto-removed";
else {
oldValue = getOld;
}
} else if (eventCrfAudit.getAuditEventTypeId() == 32) {
String getOld = eventCrfAudit.getOldValue();
if (getOld.equals("0"))
oldValue = "FALSE";
else if (getOld.equals("1"))
oldValue = "TRUE";
else {
oldValue = getOld;
}
} else {
oldValue = eventCrfAudit.getOldValue();
}
if (eventCrfAudit.getAuditEventTypeId() == 12 || eventCrfAudit.getEntityName().equals("Status")) {
String getNew = eventCrfAudit.getNewValue();
if (getNew.equals("0"))
newValue = "invalid";
else if (getNew.equals("1"))
newValue = "available";
else if (getNew.equals("2"))
newValue = "unavailable";
else if (getNew.equals("3"))
newValue = "private";
else if (getNew.equals("4"))
newValue = "pending";
else if (getNew.equals("5"))
newValue = "removed";
else if (getNew.equals("6"))
newValue = "locked";
else if (getNew.equals("7"))
newValue = "auto-removed";
else {
newValue = getNew;
}
} else if (eventCrfAudit.getAuditEventTypeId() == 32) {
String getNew = eventCrfAudit.getNewValue();
if (getNew.equals("0"))
newValue = "FALSE";
else if (getNew.equals("1"))
newValue = "TRUE";
else {
newValue = getNew;
}
} else {
newValue = eventCrfAudit.getNewValue();
}
String ordinal = "";
if (eventCrfAudit.getOrdinal() != 0) {
ordinal = "(" + eventCrfAudit.getOrdinal() + ")";
} else if (eventCrfAudit.getOrdinal() == 0 && eventCrfAudit.getItemDataRepeatKey() != 0) {
ordinal = "(" + eventCrfAudit.getItemDataRepeatKey() + ")";
}
excelRow = new String[] { eventCrfAudit.getAuditEventTypeName(), dateTimeFormat(eventCrfAudit.getAuditDate()), eventCrfAudit.getUserName(), eventCrfAudit.getEntityName() + ordinal, oldValue, newValue };
for (int i = 0; i < excelRow.length; i++) {
label = new Label(i, row, ResourceBundleProvider.getResWord(excelRow[i]), cellFormat);
excelSheet.addCell(label);
}
row++;
row++;
}
row++;
}
row++;
}
autoSizeColumns(excelSheet);
}
}
workbook.write();
workbook.close();
session.setAttribute("subject", null);
session.setAttribute("study", null);
session.setAttribute("studySub", null);
session.setAttribute("studyEventAudits", null);
session.setAttribute("studySubjectAudits", null);
session.setAttribute("events", null);
session.setAttribute("eventCRFAudits", null);
session.setAttribute("allDeletedEventCRFs", null);
} catch (Exception e) {
throw e;
} finally {
// proposed move session attributes here
}
}
use of org.akaza.openclinica.bean.admin.DeletedEventCRFBean in project OpenClinica by OpenClinica.
the class AuditDAO method findDeletedEventCRFsFromAuditEventByEventCRFStatus.
public List findDeletedEventCRFsFromAuditEventByEventCRFStatus(int studyEventId) {
this.unsetTypeExpected();
// study_event_id
this.setTypeExpected(1, TypeNames.INT);
// this.setTypeExpected(2, TypeNames.INT); // study_event_id
// crf name
this.setTypeExpected(2, TypeNames.STRING);
// crf version
this.setTypeExpected(3, TypeNames.STRING);
// user name
this.setTypeExpected(4, TypeNames.STRING);
// delete date
this.setTypeExpected(5, TypeNames.TIMESTAMP);
// delete date
this.setTypeExpected(6, TypeNames.INT);
HashMap variables = new HashMap();
// audit_log_event_type_id Event_crf status = deleted
variables.put(new Integer(1), new Integer(40));
// 40 means deleted
// items
variables.put(new Integer(2), new Integer(studyEventId));
String sql = digester.getQuery("findDeletedEventCRFsFromAuditEventByEventCRFStatus");
ArrayList alist = this.select(sql, variables);
ArrayList al = new ArrayList();
Iterator it = alist.iterator();
logger.info("alist size [" + alist.size() + "]");
while (it.hasNext()) {
DeletedEventCRFBean bean = new DeletedEventCRFBean();
HashMap map = (HashMap) it.next();
bean.setStudyEventId(studyEventId);
bean.setCrfName((String) map.get("crf_name"));
bean.setFormLayout((String) map.get("crf_version_name"));
bean.setDeletedBy((String) map.get("user_name"));
bean.setDeletedDate((Date) map.get("audit_date"));
bean.setDeletedEventCrfId((Integer) map.get("event_crf_id"));
al.add(bean);
}
return al;
}
use of org.akaza.openclinica.bean.admin.DeletedEventCRFBean in project OpenClinica by OpenClinica.
the class AuditDAO method findDeletedEventCRFsFromAuditEvent.
/*
* Find deleted Event CRFs from audit log
*
*/
public List findDeletedEventCRFsFromAuditEvent(int studyEventId) {
this.unsetTypeExpected();
// study_event_id
this.setTypeExpected(1, TypeNames.INT);
// this.setTypeExpected(2, TypeNames.INT); // study_event_id
// crf name
this.setTypeExpected(2, TypeNames.STRING);
// crf version
this.setTypeExpected(3, TypeNames.STRING);
// user name
this.setTypeExpected(4, TypeNames.STRING);
// delete date
this.setTypeExpected(5, TypeNames.TIMESTAMP);
// delete date
this.setTypeExpected(6, TypeNames.INT);
HashMap variables = new HashMap();
// audit_log_event_type_id
variables.put(new Integer(1), new Integer(13));
// 13 means deleted
// items
variables.put(new Integer(2), new Integer(studyEventId));
String sql = digester.getQuery("findDeletedEventCRFsFromAuditEvent");
ArrayList alist = this.select(sql, variables);
ArrayList al = new ArrayList();
Iterator it = alist.iterator();
logger.info("alist size [" + alist.size() + "]");
while (it.hasNext()) {
DeletedEventCRFBean bean = new DeletedEventCRFBean();
HashMap map = (HashMap) it.next();
bean.setStudyEventId(studyEventId);
bean.setCrfName((String) map.get("crf_name"));
bean.setFormLayout((String) map.get("crf_version_name"));
bean.setDeletedBy((String) map.get("user_name"));
bean.setDeletedDate((Date) map.get("audit_date"));
bean.setDeletedEventCrfId((Integer) map.get("event_crf_id"));
al.add(bean);
}
return al;
}
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