Examples with StudyUserRoleBean org.akaza.openclinica.bean.login.StudyUserRoleBean used on opensource projects

Example 61 with StudyUserRoleBean

use of org.akaza.openclinica.bean.login.StudyUserRoleBean in project OpenClinica by OpenClinica.

the class RestoreStudyServlet method processRequest.

@Override
public void processRequest() throws Exception {
    StudyDAO sdao = new StudyDAO(sm.getDataSource());
    FormProcessor fp = new FormProcessor(request);
    int studyId = fp.getInt("id");
    StudyBean study = (StudyBean) sdao.findByPK(studyId);
    // find all sites
    ArrayList sites = (ArrayList) sdao.findAllByParent(studyId);
    // find all user and roles in the study, include ones in sites
    UserAccountDAO udao = new UserAccountDAO(sm.getDataSource());
    ArrayList userRoles = udao.findAllByStudyId(studyId);
    // find all subjects in the study, include ones in sites
    StudySubjectDAO ssdao = new StudySubjectDAO(sm.getDataSource());
    ArrayList subjects = ssdao.findAllByStudy(study);
    // find all events in the study, include ones in sites
    StudyEventDefinitionDAO sefdao = new StudyEventDefinitionDAO(sm.getDataSource());
    ArrayList definitions = sefdao.findAllByStudy(study);
    String action = request.getParameter("action");
    if (studyId == 0) {
        addPageMessage(respage.getString("please_choose_a_study_to_restore"));
        forwardPage(Page.STUDY_LIST_SERVLET);
    } else {
        if ("confirm".equalsIgnoreCase(action)) {
            request.setAttribute("studyToRestore", study);
            request.setAttribute("sitesToRestore", sites);
            request.setAttribute("userRolesToRestore", userRoles);
            request.setAttribute("subjectsToRestore", subjects);
            request.setAttribute("definitionsToRRestore", definitions);
            forwardPage(Page.RESTORE_STUDY);
        } else {
            logger.info("submit to restore the study");
            // change all statuses to unavailable
            StudyDAO studao = new StudyDAO(sm.getDataSource());
            study.setStatus(study.getOldStatus());
            study.setUpdater(ub);
            study.setUpdatedDate(new Date());
            studao.update(study);
            // YW 09-27-2007 << restore auto-removed sites
            for (int i = 0; i < sites.size(); i++) {
                StudyBean site = (StudyBean) sites.get(i);
                if (site.getStatus() == Status.AUTO_DELETED) {
                    site.setStatus(site.getOldStatus());
                    site.setUpdater(ub);
                    site.setUpdatedDate(new Date());
                    sdao.update(site);
                }
            }
            // restore all users and roles
            for (int i = 0; i < userRoles.size(); i++) {
                StudyUserRoleBean role = (StudyUserRoleBean) userRoles.get(i);
                if (role.getStatus().equals(Status.AUTO_DELETED)) {
                    role.setStatus(Status.AVAILABLE);
                    role.setUpdater(ub);
                    role.setUpdatedDate(new Date());
                    udao.updateStudyUserRole(role, role.getUserName());
                }
            }
            // is current active study
            if (study.getId() == currentStudy.getId()) {
                currentStudy.setStatus(Status.AVAILABLE);
                StudyUserRoleBean r = (new UserAccountDAO(sm.getDataSource())).findRoleByUserNameAndStudyId(ub.getName(), currentStudy.getId());
                currentRole.setRole(r.getRole());
            } else // active site will be restored as well if it was auto-removed
            if (currentStudy.getParentStudyId() == study.getId() && currentStudy.getStatus() == Status.AUTO_DELETED) {
                currentStudy.setStatus(Status.AVAILABLE);
                StudyUserRoleBean r = (new UserAccountDAO(sm.getDataSource())).findRoleByUserNameAndStudyId(ub.getName(), currentStudy.getId());
                StudyUserRoleBean rInParent = (new UserAccountDAO(sm.getDataSource())).findRoleByUserNameAndStudyId(ub.getName(), currentStudy.getParentStudyId());
                // according to logic in SecureController.java: inherited
                // role from parent study, pick the higher role
                currentRole.setRole(Role.get(Role.max(r.getRole(), rInParent.getRole()).getId()));
            }
            // restore all subjects
            for (int i = 0; i < subjects.size(); i++) {
                StudySubjectBean subject = (StudySubjectBean) subjects.get(i);
                if (subject.getStatus().equals(Status.AUTO_DELETED)) {
                    subject.setStatus(Status.AVAILABLE);
                    subject.setUpdater(ub);
                    subject.setUpdatedDate(new Date());
                    ssdao.update(subject);
                }
            }
            // restore all study_group
            StudyGroupDAO sgdao = new StudyGroupDAO(sm.getDataSource());
            StudyGroupClassDAO sgcdao = new StudyGroupClassDAO(sm.getDataSource());
            SubjectGroupMapDAO sgmdao = new SubjectGroupMapDAO(sm.getDataSource());
            ArrayList groups = sgcdao.findAllByStudy(study);
            for (int i = 0; i < groups.size(); i++) {
                StudyGroupClassBean group = (StudyGroupClassBean) groups.get(i);
                if (group.getStatus().equals(Status.AUTO_DELETED)) {
                    group.setStatus(Status.AVAILABLE);
                    group.setUpdater(ub);
                    group.setUpdatedDate(new Date());
                    sgcdao.update(group);
                    // all subject_group_map
                    ArrayList subjectGroupMaps = sgmdao.findAllByStudyGroupClassId(group.getId());
                    for (int j = 0; j < subjectGroupMaps.size(); j++) {
                        SubjectGroupMapBean sgMap = (SubjectGroupMapBean) subjectGroupMaps.get(j);
                        if (sgMap.getStatus().equals(Status.AUTO_DELETED)) {
                            sgMap.setStatus(Status.AVAILABLE);
                            sgMap.setUpdater(ub);
                            sgMap.setUpdatedDate(new Date());
                            sgmdao.update(sgMap);
                        }
                    }
                }
            }
            // restore all event definitions and event
            EventDefinitionCRFDAO edcdao = new EventDefinitionCRFDAO(sm.getDataSource());
            StudyEventDAO sedao = new StudyEventDAO(sm.getDataSource());
            for (int i = 0; i < definitions.size(); i++) {
                StudyEventDefinitionBean definition = (StudyEventDefinitionBean) definitions.get(i);
                if (definition.getStatus().equals(Status.AUTO_DELETED)) {
                    definition.setStatus(Status.AVAILABLE);
                    definition.setUpdater(ub);
                    definition.setUpdatedDate(new Date());
                    sefdao.update(definition);
                    ArrayList edcs = (ArrayList) edcdao.findAllByDefinition(definition.getId());
                    for (int j = 0; j < edcs.size(); j++) {
                        EventDefinitionCRFBean edc = (EventDefinitionCRFBean) edcs.get(j);
                        if (edc.getStatus().equals(Status.AUTO_DELETED)) {
                            edc.setStatus(Status.AVAILABLE);
                            edc.setUpdater(ub);
                            edc.setUpdatedDate(new Date());
                            edcdao.update(edc);
                        }
                    }
                    ArrayList events = (ArrayList) sedao.findAllByDefinition(definition.getId());
                    EventCRFDAO ecdao = new EventCRFDAO(sm.getDataSource());
                    for (int j = 0; j < events.size(); j++) {
                        StudyEventBean event = (StudyEventBean) events.get(j);
                        if (event.getStatus().equals(Status.AUTO_DELETED)) {
                            event.setStatus(Status.AVAILABLE);
                            event.setUpdater(ub);
                            event.setUpdatedDate(new Date());
                            sedao.update(event);
                            ArrayList eventCRFs = ecdao.findAllByStudyEvent(event);
                            ItemDataDAO iddao = new ItemDataDAO(sm.getDataSource());
                            for (int k = 0; k < eventCRFs.size(); k++) {
                                EventCRFBean eventCRF = (EventCRFBean) eventCRFs.get(k);
                                if (eventCRF.getStatus().equals(Status.AUTO_DELETED)) {
                                    eventCRF.setStatus(eventCRF.getOldStatus());
                                    eventCRF.setUpdater(ub);
                                    eventCRF.setUpdatedDate(new Date());
                                    ecdao.update(eventCRF);
                                    ArrayList itemDatas = iddao.findAllByEventCRFId(eventCRF.getId());
                                    for (int a = 0; a < itemDatas.size(); a++) {
                                        ItemDataBean item = (ItemDataBean) itemDatas.get(a);
                                        if (item.getStatus().equals(Status.AUTO_DELETED)) {
                                            item.setStatus(item.getOldStatus());
                                            item.setUpdater(ub);
                                            item.setUpdatedDate(new Date());
                                            iddao.update(item);
                                        }
                                    }
                                }
                            }
                        }
                    }
                }
            }
            // for definitions
            DatasetDAO datadao = new DatasetDAO(sm.getDataSource());
            ArrayList dataset = datadao.findAllByStudyId(study.getId());
            for (int i = 0; i < dataset.size(); i++) {
                DatasetBean data = (DatasetBean) dataset.get(i);
                if (data.getStatus().equals(Status.AUTO_DELETED)) {
                    data.setStatus(Status.AVAILABLE);
                    data.setUpdater(ub);
                    data.setUpdatedDate(new Date());
                    datadao.update(data);
                }
            }
            addPageMessage(respage.getString("this_study_has_been_restored_succesfully"));
            forwardPage(Page.STUDY_LIST_SERVLET);
        }
    }
}

Example 62 with StudyUserRoleBean

use of org.akaza.openclinica.bean.login.StudyUserRoleBean in project OpenClinica by OpenClinica.

the class PrintEventCRFServlet method mayProceed.

/**
     * Checks whether the user has the correct privilege
     */
@Override
public void mayProceed(HttpServletRequest request, HttpServletResponse response) throws InsufficientPermissionException {
    locale = LocaleResolver.getLocale(request);
    StudyUserRoleBean currentRole = (StudyUserRoleBean) request.getSession().getAttribute("userRole");
    UserAccountBean ub = (UserAccountBean) request.getSession().getAttribute(USER_BEAN_NAME);
    if (ub.isSysAdmin()) {
        return;
    }
    if (SubmitDataServlet.mayViewData(ub, currentRole)) {
        return;
    }
    addPageMessage(respage.getString("no_have_correct_privilege_current_study") + respage.getString("change_study_contact_sysadmin"), request);
    throw new InsufficientPermissionException(Page.MENU_SERVLET, resexception.getString("not_director"), "1");
}

Example 63 with StudyUserRoleBean

use of org.akaza.openclinica.bean.login.StudyUserRoleBean in project OpenClinica by OpenClinica.

the class PrintAllEventCRFServlet method mayProceed.

/**
     * Checks whether the user has the correct privilege
     */
@Override
public void mayProceed(HttpServletRequest request, HttpServletResponse response) throws InsufficientPermissionException {
    locale = LocaleResolver.getLocale(request);
    UserAccountBean ub = (UserAccountBean) request.getSession().getAttribute(USER_BEAN_NAME);
    StudyUserRoleBean currentRole = (StudyUserRoleBean) request.getSession().getAttribute("userRole");
    if (ub.isSysAdmin()) {
        return;
    }
    if (SubmitDataServlet.mayViewData(ub, currentRole)) {
        return;
    }
    addPageMessage(respage.getString("no_have_correct_privilege_current_study") + respage.getString("change_study_contact_sysadmin"), request);
    throw new InsufficientPermissionException(Page.MENU_SERVLET, resexception.getString("not_director"), "1");
}

Example 64 with StudyUserRoleBean

use of org.akaza.openclinica.bean.login.StudyUserRoleBean in project OpenClinica by OpenClinica.

the class DoubleDataEntryServlet method userIsOwnerAndLessThanTwelveHoursHavePassed.

private boolean userIsOwnerAndLessThanTwelveHoursHavePassed(HttpServletRequest request) {
    UserAccountBean ub = (UserAccountBean) request.getSession().getAttribute(USER_BEAN_NAME);
    StudyUserRoleBean currentRole = (StudyUserRoleBean) request.getSession().getAttribute("userRole");
    EventCRFBean ecb = (EventCRFBean) request.getAttribute(INPUT_EVENT_CRF);
    boolean userIsOwner = ub.getId() == ecb.getOwnerId();
    boolean lessThanTwelveHoursHavePassed = !DisplayEventCRFBean.initialDataEntryCompletedMoreThanTwelveHoursAgo(ecb);
    return userIsOwner && lessThanTwelveHoursHavePassed;
}

Example 65 with StudyUserRoleBean

use of org.akaza.openclinica.bean.login.StudyUserRoleBean in project OpenClinica by OpenClinica.

the class DoubleDataEntryServlet method mayProceed.

/*
     * (non-Javadoc)
     *
     * @see org.akaza.openclinica.control.core.SecureController#mayProceed()
     */
@Override
protected void mayProceed(HttpServletRequest request, HttpServletResponse response) throws InsufficientPermissionException {
    checkStudyLocked(Page.LIST_STUDY_SUBJECTS, respage.getString("current_study_locked"), request, response);
    checkStudyFrozen(Page.LIST_STUDY_SUBJECTS, respage.getString("current_study_frozen"), request, response);
    UserAccountBean ub = (UserAccountBean) request.getSession().getAttribute(USER_BEAN_NAME);
    StudyUserRoleBean currentRole = (StudyUserRoleBean) request.getSession().getAttribute("userRole");
    HttpSession session = request.getSession();
    locale = LocaleResolver.getLocale(request);
    // < respage =
    // ResourceBundle.getBundle("org.akaza.openclinica.i18n.page_messages",
    // locale);
    // < restext =
    // ResourceBundle.getBundle("org.akaza.openclinica.i18n.notes",locale);
    // <
    // resexception=ResourceBundle.getBundle(
    // "org.akaza.openclinica.i18n.exceptions",locale);
    // < resword =
    // ResourceBundle.getBundle("org.akaza.openclinica.i18n.words",locale);
    getInputBeans(request);
    EventCRFBean ecb = (EventCRFBean) request.getAttribute(INPUT_EVENT_CRF);
    FormProcessor fp = new FormProcessor(request);
    SectionBean sb = (SectionBean) request.getAttribute(SECTION_BEAN);
    // BWP 12/2/07>> The following COUNT_VALIDATE session attribute is not
    // accessible,
    // for unknown reasons (threading problems?), when
    // double-data entry displays error messages; it's value is always 0; so
    // I have to create my
    // own session variable here to keep track of DDE stages
    // We'll go by the SectionBean's ordinal first
    int tabNumber = 1;
    if (sb != null) {
        tabNumber = sb.getOrdinal();
    }
    // if tabNumber still isn't valid, check the "tab" parameter
    if (tabNumber < 1) {
        if (fp == null) {
            fp = new FormProcessor(request);
        }
        String tab = fp.getString("tab");
        if (tab == null || tab.length() < 1) {
            tabNumber = 1;
        } else {
            tabNumber = fp.getInt("tab");
        }
    }
    SectionDAO sectionDao = new SectionDAO(getDataSource());
    int crfVersionId = ecb.getCRFVersionId();
    int eventCRFId = ecb.getId();
    ArrayList sections = sectionDao.findAllByCRFVersionId(crfVersionId);
    int sectionSize = sections.size();
    HttpSession mySession = request.getSession();
    DoubleDataProgress doubleDataProgress = (DoubleDataProgress) mySession.getAttribute(DDE_PROGESS);
    if (doubleDataProgress == null || doubleDataProgress.getEventCRFId() != eventCRFId) {
        doubleDataProgress = new DoubleDataProgress(sectionSize, eventCRFId);
        mySession.setAttribute(DDE_PROGESS, doubleDataProgress);
    }
    boolean hasVisitedSection = doubleDataProgress.getSectionVisited(tabNumber, eventCRFId);
    // setting up one-time validation here
    // admit that it's an odd place to put it, but where else?
    // placing it in dataentryservlet is creating too many counts
    int keyId = ecb.getId();
    Integer count = (Integer) session.getAttribute(COUNT_VALIDATE + keyId);
    if (count != null) {
        count++;
        session.setAttribute(COUNT_VALIDATE + keyId, count);
        LOGGER.info("^^^just set count to session: " + count);
    } else {
        count = 0;
        session.setAttribute(COUNT_VALIDATE + keyId, count);
        LOGGER.info("***count not found, set to session: " + count);
    }
    DataEntryStage stage = ecb.getStage();
    if (stage.equals(DataEntryStage.INITIAL_DATA_ENTRY_COMPLETE) && !hasVisitedSection) {
        // if the user has not entered this section yet in Double Data
        // Entry, then
        // set a flag that default values should be shown in the form
        request.setAttribute(DDE_ENTERED, true);
    }
    // Now update the session attribute
    doubleDataProgress.setSectionVisited(eventCRFId, tabNumber, true);
    mySession.setAttribute("doubleDataProgress", doubleDataProgress);
    // StudyEventStatus status =
    Role r = currentRole.getRole();
    session.setAttribute("mayProcessUploading", "true");
    return;
}