Examples with EventDefinitionCRFBean org.akaza.openclinica.bean.managestudy.EventDefinitionCRFBean used on opensource projects

Example 36 with EventDefinitionCRFBean

use of org.akaza.openclinica.bean.managestudy.EventDefinitionCRFBean in project OpenClinica by OpenClinica.

the class CrfBusinessLogicHelper method markCRFComplete.

/**
 * The following methods are for 'mark CRF complete' Note that we will also wrap Study Event status changes in this
 * code, possibly split out in a later release, tbh 06/2008
 *
 * @return
 */
public boolean markCRFComplete(EventCRFBean ecb, UserAccountBean ub) throws Exception {
    // locale = LocaleResolver.getLocale(request);
    // < respage =
    // ResourceBundle.getBundle("org.akaza.openclinica.i18n.page_messages",
    // locale);
    // < restext =
    // ResourceBundle.getBundle("org.akaza.openclinica.i18n.notes",locale);
    // <
    // resexception=ResourceBundle.getBundle(
    // "org.akaza.openclinica.i18n.exceptions",locale);
    // getEventCRFBean();
    // getEventDefinitionCRFBean();
    DataEntryStage stage = ecb.getStage();
    EventCRFDAO eventCrfDao = new EventCRFDAO(ds);
    ItemDataDAO itemDataDao = new ItemDataDAO(ds);
    StudyDAO sdao = new StudyDAO(ds);
    StudySubjectDAO ssdao = new StudySubjectDAO(ds);
    StudyBean study = sdao.findByStudySubjectId(ecb.getStudySubjectId());
    EventDefinitionCRFBean edcb = getEventDefinitionCrfByStudyEventAndCrfVersion(ecb, study);
    // StudyEventDAO studyEventDao = new StudyEventDAO(ds);
    // StudyEventBean studyEventBean = (StudyEventBean)
    // studyEventDao.findByPK(ecb.getStudyEventId());
    // Status studyEventStatus = studyEventBean.getStatus();
    StudyEventDefinitionDAO studyEventDefinitionDao = new StudyEventDefinitionDAO(ds);
    StudyEventDefinitionBean sedBean = (StudyEventDefinitionBean) studyEventDefinitionDao.findByPK(edcb.getStudyEventDefinitionId());
    CRFDAO crfDao = new CRFDAO(ds);
    ArrayList crfs = (ArrayList) crfDao.findAllActiveByDefinition(sedBean);
    sedBean.setCrfs(crfs);
    // request.setAttribute(TableOfContentsServlet.INPUT_EVENT_CRF_BEAN,
    // ecb);
    // request.setAttribute(INPUT_EVENT_CRF_ID, new
    // Integer(ecb.getId()));
    logger.debug("inout_event_crf_id:" + ecb.getId());
    logger.debug("inout_study_event_def_id:" + sedBean.getId());
    // below bit is from DataEntryServlet, is more appropriate for filling
    // in by hand than by automatic
    // removing this in favor of the more streamlined effect below, tbh
    // 06/2008
    // Page errorPage = getJSPPage();
    // if (stage.equals(DataEntryStage.UNCOMPLETED) ||
    // stage.equals(DataEntryStage.DOUBLE_DATA_ENTRY_COMPLETE) ||
    // stage.equals(DataEntryStage.LOCKED)) {
    // logger.info(
    // "addPageMessage(respage.getString(\"not_mark_CRF_complete1\"))");
    // return false;
    // }
    // 
    // if (stage.equals(DataEntryStage.INITIAL_DATA_ENTRY_COMPLETE) ||
    // stage.equals(DataEntryStage.DOUBLE_DATA_ENTRY)) {
    // 
    // /*
    // * if (!edcb.isDoubleEntry()) {
    // *
    // logger.info(
    // "addPageMessage(respage.getString(\"not_mark_CRF_complete2\"))");
    // * return false; }
    // *
    // */
    // }
    // 
    // /*
    // * if (!isEachSectionReviewedOnce()) { addPageMessage("You may not
    // mark
    // * this Event CRF complete, because there are some sections which have
    // * not been reviewed once."); return false; }
    // */
    // 
    // if (!isEachRequiredFieldFillout(ecb)) {
    // logger.info(
    // "addPageMessage(respage.getString(\"not_mark_CRF_complete4\"))");
    // return false;
    // }
    // 
    // /*
    // * if (ecb.getInterviewerName().trim().equals("")) { throw new
    // * InconsistentStateException(errorPage, "You may not mark this Event
    // * CRF complete, because the interviewer name is blank."); }
    // */
    Status newStatus = ecb.getStatus();
    DataEntryStage newStage = ecb.getStage();
    boolean ide = true;
    // currently we are setting the event crf status to complete, so this
    // block is all to
    // complete, tbh
    // if (stage.equals(DataEntryStage.INITIAL_DATA_ENTRY) &&
    // edcb.isDoubleEntry()) {
    // newStatus = Status.PENDING;
    // ecb.setUpdaterId(ub.getId());
    // ecb.setUpdater(ub);
    // ecb.setUpdatedDate(new Date());
    // ecb.setDateCompleted(new Date());
    // } else if (stage.equals(DataEntryStage.INITIAL_DATA_ENTRY) &&
    // !edcb.isDoubleEntry()) {
    // newStatus = Status.UNAVAILABLE;
    // ecb.setUpdaterId(ub.getId());
    // ecb.setUpdater(ub);
    // ecb.setUpdatedDate(new Date());
    // ecb.setDateCompleted(new Date());
    // ecb.setDateValidateCompleted(new Date());
    // } else if
    // (stage.equals(DataEntryStage.INITIAL_DATA_ENTRY_COMPLETE)
    // || stage.equals(DataEntryStage.DOUBLE_DATA_ENTRY)) {
    // newStatus = Status.UNAVAILABLE;
    // ecb.setDateValidateCompleted(new Date());
    // ide = false;
    // }
    newStatus = Status.UNAVAILABLE;
    // ecb.setUpdaterId(ub.getId());
    ecb.setUpdater(ub);
    ecb.setUpdatedDate(new Date());
    ecb.setDateCompleted(new Date());
    ecb.setDateValidateCompleted(new Date());
    /*
         * //for the non-reviewed sections, no item data in DB yet, need to //create them if
         * (!isEachSectionReviewedOnce()) { boolean canSave = saveItemsToMarkComplete(newStatus); if (canSave == false){
         * addPageMessage("You may not mark this Event CRF complete, because there are some required entries which have
         * not been filled out."); return false; } }
         */
    ecb.setStatus(newStatus);
    ecb.setStage(newStage);
    ecb = (EventCRFBean) eventCrfDao.update(ecb);
    logger.debug("just updated event crf id: " + ecb.getId());
    // note the below statement only updates the DATES, not the STATUS
    eventCrfDao.markComplete(ecb, ide);
    // update all the items' status to complete
    itemDataDao.updateStatusByEventCRF(ecb, newStatus);
    // change status for study event
    StudyEventDAO sedao = new StudyEventDAO(ds);
    StudyEventBean seb = (StudyEventBean) sedao.findByPK(ecb.getStudyEventId());
    seb.setUpdatedDate(new Date());
    seb.setUpdater(ub);
    // updates with Pauls observation from bug:2488:
    // 1. If there is only one CRF in the event (whether the CRF was
    // required or not), and data was imported for it, the status of the
    // event should be Completed.
    // 
    logger.debug("sed bean get crfs get size: " + sedBean.getCrfs().size());
    logger.debug("edcb get crf id: " + edcb.getCrfId() + " version size? " + edcb.getVersions().size());
    logger.debug("ecb get crf id: " + ecb.getCrf().getId());
    logger.debug("ecb get crf version id: " + ecb.getCRFVersionId());
    if (sedBean.getCrfs().size() == 1) {
        seb.setSubjectEventStatus(SubjectEventStatus.COMPLETED);
        logger.info("just set subj event status to -- COMPLETED --");
    } else // removing sedBean.getCrfs().size() > 1 &&
    if (areAllRequired(seb, study) && !areAllCompleted(seb, study)) {
        seb.setSubjectEventStatus(SubjectEventStatus.DATA_ENTRY_STARTED);
        logger.info("just set subj event status to -- DATAENTRYSTARTED --");
    } else // removing sedBean.getCrfs().size() > 1 &&
    if (!areAllRequired(seb, study)) {
        if (areAllRequiredCompleted(seb, study)) {
            seb.setSubjectEventStatus(SubjectEventStatus.COMPLETED);
            logger.info("just set subj event status to -- 3completed3 --");
        } else {
            seb.setSubjectEventStatus(SubjectEventStatus.DATA_ENTRY_STARTED);
            logger.info("just set subj event status to -- DATAENTRYSTARTED --");
        }
    } else if (noneAreRequired(seb, study)) {
        seb.setSubjectEventStatus(SubjectEventStatus.COMPLETED);
        logger.info("just set subj event status to -- 5completed5 --");
    }
    logger.debug("just set subj event status, final status is " + seb.getSubjectEventStatus().getName());
    logger.debug("final overall status is " + seb.getStatus().getName());
    seb = (StudyEventBean) sedao.update(seb);
    return true;
}

Example 37 with EventDefinitionCRFBean

use of org.akaza.openclinica.bean.managestudy.EventDefinitionCRFBean in project OpenClinica by OpenClinica.

the class CrfBusinessLogicHelper method markCRFStarted.

/**
 * The following methods are for 'mark CRF Started' Note that we will also wrap Study Event status changes in this
 * code, possibly split out in a later release, tbh 06/2008
 *
 * @return
 */
public boolean markCRFStarted(EventCRFBean ecb, UserAccountBean ub, boolean inTransaction) throws Exception {
    EventCRFDAO eventCrfDao = new EventCRFDAO(ds);
    StudyDAO sdao = new StudyDAO(ds);
    StudyBean study = sdao.findByStudySubjectId(ecb.getStudySubjectId());
    EventDefinitionCRFBean edcb = getEventDefinitionCrfByStudyEventAndCrfVersion(ecb, study);
    StudyEventDefinitionDAO studyEventDefinitionDao = new StudyEventDefinitionDAO(ds);
    StudyEventDefinitionBean sedBean = (StudyEventDefinitionBean) studyEventDefinitionDao.findByPK(edcb.getStudyEventDefinitionId());
    CRFDAO crfDao = new CRFDAO(ds);
    ArrayList crfs = (ArrayList) crfDao.findAllActiveByDefinition(sedBean);
    sedBean.setCrfs(crfs);
    logger.debug("inout_event_crf_id:" + ecb.getId());
    logger.debug("inout_study_event_def_id:" + sedBean.getId());
    Status newStatus = Status.AVAILABLE;
    DataEntryStage newStage = ecb.getStage();
    ecb.setUpdater(ub);
    ecb.setUpdatedDate(new Date());
    ecb.setStatus(newStatus);
    ecb.setStage(newStage);
    ecb = (EventCRFBean) eventCrfDao.update(ecb);
    logger.debug("just updated event crf id: " + ecb.getId());
    StudyEventDAO sedao = new StudyEventDAO(ds);
    StudyEventBean seb = (StudyEventBean) sedao.findByPK(ecb.getStudyEventId());
    if (seb.getSubjectEventStatus().isScheduled() || seb.getSubjectEventStatus().isNotScheduled() || seb.getSubjectEventStatus().isDE_Started()) {
        // change status for study event
        seb.setUpdatedDate(new Date());
        seb.setUpdater(ub);
        seb.setSubjectEventStatus(SubjectEventStatus.DATA_ENTRY_STARTED);
        seb = (StudyEventBean) sedao.update(seb, inTransaction);
    }
    return true;
}

Example 38 with EventDefinitionCRFBean

use of org.akaza.openclinica.bean.managestudy.EventDefinitionCRFBean in project OpenClinica by OpenClinica.

the class CrfBusinessLogicHelper method markCRFComplete.

/**
 * The following methods are for 'mark CRF complete' Note that we will also wrap Study Event status changes in this
 * code, possibly split out in a later release, tbh 06/2008
 *
 * @return
 */
public boolean markCRFComplete(EventCRFBean ecb, UserAccountBean ub, boolean inTransaction) throws Exception {
    DataEntryStage stage = ecb.getStage();
    EventCRFDAO eventCrfDao = new EventCRFDAO(ds);
    ItemDataDAO itemDataDao = new ItemDataDAO(ds);
    StudyDAO sdao = new StudyDAO(ds);
    StudySubjectDAO ssdao = new StudySubjectDAO(ds);
    StudyBean study = sdao.findByStudySubjectId(ecb.getStudySubjectId());
    EventDefinitionCRFBean edcb = getEventDefinitionCrfByStudyEventAndCrfVersion(ecb, study);
    // StudyEventDAO studyEventDao = new StudyEventDAO(ds);
    // StudyEventBean studyEventBean = (StudyEventBean)
    // studyEventDao.findByPK(ecb.getStudyEventId());
    // Status studyEventStatus = studyEventBean.getStatus();
    StudyEventDefinitionDAO studyEventDefinitionDao = new StudyEventDefinitionDAO(ds);
    StudyEventDefinitionBean sedBean = (StudyEventDefinitionBean) studyEventDefinitionDao.findByPK(edcb.getStudyEventDefinitionId());
    CRFDAO crfDao = new CRFDAO(ds);
    ArrayList crfs = (ArrayList) crfDao.findAllActiveByDefinition(sedBean);
    sedBean.setCrfs(crfs);
    // request.setAttribute(TableOfContentsServlet.INPUT_EVENT_CRF_BEAN,
    // ecb);
    // request.setAttribute(INPUT_EVENT_CRF_ID, new
    // Integer(ecb.getId()));
    logger.debug("inout_event_crf_id:" + ecb.getId());
    logger.debug("inout_study_event_def_id:" + sedBean.getId());
    Status newStatus = ecb.getStatus();
    DataEntryStage newStage = ecb.getStage();
    boolean ide = true;
    newStatus = Status.UNAVAILABLE;
    // ecb.setUpdaterId(ub.getId());
    ecb.setUpdater(ub);
    ecb.setUpdatedDate(new Date());
    ecb.setDateCompleted(new Date());
    ecb.setDateValidateCompleted(new Date());
    /*
         * //for the non-reviewed sections, no item data in DB yet, need to //create them if
         * (!isEachSectionReviewedOnce()) { boolean canSave = saveItemsToMarkComplete(newStatus); if (canSave == false){
         * addPageMessage("You may not mark this Event CRF complete, because there are some required entries which have
         * not been filled out."); return false; } }
         */
    ecb.setStatus(newStatus);
    ecb.setStage(newStage);
    ecb = (EventCRFBean) eventCrfDao.update(ecb);
    logger.debug("just updated event crf id: " + ecb.getId());
    // note the below statement only updates the DATES, not the STATUS
    eventCrfDao.markComplete(ecb, ide);
    // update all the items' status to complete
    itemDataDao.updateStatusByEventCRF(ecb, newStatus);
    // change status for study event
    StudyEventDAO sedao = new StudyEventDAO(ds);
    StudyEventBean seb = (StudyEventBean) sedao.findByPK(ecb.getStudyEventId());
    seb.setUpdatedDate(new Date());
    seb.setUpdater(ub);
    // updates with Pauls observation from bug:2488:
    // 1. If there is only one CRF in the event (whether the CRF was
    // required or not), and data was imported for it, the status of the
    // event should be Completed.
    // 
    logger.debug("sed bean get crfs get size: " + sedBean.getCrfs().size());
    logger.debug("edcb get crf id: " + edcb.getCrfId() + " version size? " + edcb.getVersions().size());
    logger.debug("ecb get crf id: " + ecb.getCrf().getId());
    logger.debug("ecb get crf version id: " + ecb.getCRFVersionId());
    if (sedBean.getCrfs().size() == 1) {
        // && edcb.getCrfId() ==
        // ecb.getCrf().getId()) {
        seb.setSubjectEventStatus(SubjectEventStatus.COMPLETED);
        logger.info("just set subj event status to -- COMPLETED --");
    } else // removing sedBean.getCrfs().size() > 1 &&
    if (areAllRequired(seb, study) && !areAllCompleted(seb, study)) {
        seb.setSubjectEventStatus(SubjectEventStatus.DATA_ENTRY_STARTED);
        logger.info("just set subj event status to -- DATAENTRYSTARTED --");
    } else // removing sedBean.getCrfs().size() > 1 &&
    if (!areAllRequired(seb, study)) {
        if (areAllRequiredCompleted(seb, study)) {
            seb.setSubjectEventStatus(SubjectEventStatus.COMPLETED);
            logger.info("just set subj event status to -- 3completed3 --");
        } else {
            seb.setSubjectEventStatus(SubjectEventStatus.DATA_ENTRY_STARTED);
            logger.info("just set subj event status to -- DATAENTRYSTARTED --");
        }
    } else if (noneAreRequired(seb, study)) {
        seb.setSubjectEventStatus(SubjectEventStatus.COMPLETED);
        logger.info("just set subj event status to -- 5completed5 --");
    }
    logger.debug("just set subj event status, final status is " + seb.getSubjectEventStatus().getName());
    logger.debug("final overall status is " + seb.getStatus().getName());
    seb = (StudyEventBean) sedao.update(seb, inTransaction);
    return true;
}

Example 39 with EventDefinitionCRFBean

use of org.akaza.openclinica.bean.managestudy.EventDefinitionCRFBean in project OpenClinica by OpenClinica.

the class CrfBusinessLogicHelper method getEventDefinitionCrfByStudyEventAndCrfVersion.

private EventDefinitionCRFBean getEventDefinitionCrfByStudyEventAndCrfVersion(EventCRFBean eventCrf, StudyBean study) {
    EventDefinitionCRFDAO eventDefinitionCrfDao = new EventDefinitionCRFDAO(ds);
    // TODO we have to get that id before we can continue
    eventDefinitionCrfDao = new EventDefinitionCRFDAO(ds);
    EventDefinitionCRFBean eventDefinitionCrf = eventDefinitionCrfDao.findByStudyEventIdAndCRFVersionId(study, eventCrf.getStudyEventId(), eventCrf.getCRFVersionId());
    return eventDefinitionCrf;
}

Example 40 with EventDefinitionCRFBean

use of org.akaza.openclinica.bean.managestudy.EventDefinitionCRFBean in project OpenClinica by OpenClinica.

the class CrfBusinessLogicHelper method areAllRequired.

protected boolean areAllRequired(StudyEventBean seBean, StudyBean study) {
    EventDefinitionCRFDAO edcDao = new EventDefinitionCRFDAO(ds);
    // EventCRFDAO eventCrfDao = new EventCRFDAO(ds);
    // ArrayList allCRFs = eventCrfDao.findAllByStudyEvent(seBean);
    ArrayList allEDCs = (ArrayList) edcDao.findAllActiveByEventDefinitionId(study, seBean.getStudyEventDefinitionId());
    boolean areAllRequired = true;
    for (int i = 0; i < allEDCs.size(); i++) {
        EventDefinitionCRFBean ec = (EventDefinitionCRFBean) allEDCs.get(i);
        if (!ec.isRequiredCRF()) {
            areAllRequired = false;
            break;
        }
    }
    logger.info("returning for are all required: " + areAllRequired);
    return areAllRequired;
}