Examples with EventDefinitionCRFBean org.akaza.openclinica.bean.managestudy.EventDefinitionCRFBean used on opensource projects

Example 31 with EventDefinitionCRFBean

use of org.akaza.openclinica.bean.managestudy.EventDefinitionCRFBean in project OpenClinica by OpenClinica.

the class ListDiscNotesForCRFTableFactory method getCrfs.

@SuppressWarnings("unchecked")
private ArrayList<CRFBean> getCrfs(StudyEventDefinitionBean eventDefinition) {
    if (this.crfBeans == null) {
        crfBeans = new ArrayList<CRFBean>();
        eventDefinitionCrfs = new ArrayList<EventDefinitionCRFBean>();
        ArrayList<Integer> ids = new ArrayList<Integer>();
        List<EventDefinitionCRFBean> edcs = new ArrayList<EventDefinitionCRFBean>();
        if (this.getStudyBean().getParentStudyId() > 0) {
            edcs = (List<EventDefinitionCRFBean>) getEventDefintionCRFDAO().findAllActiveNonHiddenByEventDefinitionIdAndStudy(eventDefinition.getId(), this.getStudyBean());
        } else {
            edcs = getEventDefintionCRFDAO().findAllActiveByEventDefinitionId(eventDefinition.getId());
        }
        if (edcs.size() > 0) {
            for (EventDefinitionCRFBean eventDefinitionCrf : edcs) {
                CRFBean crf = (CRFBean) getCrfDAO().findByPK(eventDefinitionCrf.getCrfId());
                if (!ids.contains(crf.getId())) {
                    crfBeans.add(crf);
                    ids.add(crf.getId());
                    eventDefinitionCrfs.add(eventDefinitionCrf);
                }
            }
        }
        return crfBeans;
    }
    return crfBeans;
}

Example 32 with EventDefinitionCRFBean

use of org.akaza.openclinica.bean.managestudy.EventDefinitionCRFBean in project OpenClinica by OpenClinica.

the class OdmController method getODM.

private ODM getODM(String studyOID, String subjectKey) {
    ODM odm = new ODM();
    String ssoid = subjectKey;
    if (ssoid == null) {
        return null;
    }
    CRFVersionDAO versionDAO = new CRFVersionDAO(dataSource);
    StudyDAO studyDAO = new StudyDAO(dataSource);
    StudySubjectDAO studySubjectDAO = new StudySubjectDAO(dataSource);
    EventCRFDAO eventCRFDAO = new EventCRFDAO(dataSource);
    ItemDataDAO itemDataDAO = new ItemDataDAO(dataSource);
    CRFDAO crfDAO = new CRFDAO(dataSource);
    List<ODMcomplexTypeDefinitionFormData> formDatas = new ArrayList<>();
    try {
        // Retrieve crfs for next event
        StudySubjectBean studySubjectBean = studySubjectDAO.findByOid(ssoid);
        ParticipantEventService participantEventService = new ParticipantEventService(dataSource);
        StudyEventBean nextEvent = participantEventService.getNextParticipantEvent(studySubjectBean);
        if (nextEvent != null) {
            logger.debug("Found event: " + nextEvent.getName() + " - ID: " + nextEvent.getId());
            List<EventCRFBean> eventCrfs = eventCRFDAO.findAllByStudyEvent(nextEvent);
            StudyBean study = studyDAO.findByOid(studyOID);
            if (!mayProceed(studyOID, studySubjectBean))
                return odm;
            List<EventDefinitionCRFBean> eventDefCrfs = participantEventService.getEventDefCrfsForStudyEvent(studySubjectBean, nextEvent);
            for (EventDefinitionCRFBean eventDefCrf : eventDefCrfs) {
                if (eventDefCrf.isParticipantForm()) {
                    EventCRFBean eventCRF = participantEventService.getExistingEventCRF(studySubjectBean, nextEvent, eventDefCrf);
                    boolean itemDataExists = false;
                    boolean validStatus = true;
                    CRFVersionBean crfVersion = null;
                    if (eventCRF != null) {
                        if (eventCRF.getStatus().getId() != 1 && eventCRF.getStatus().getId() != 2)
                            validStatus = false;
                        if (itemDataDAO.findAllByEventCRFId(eventCRF.getId()).size() > 0)
                            itemDataExists = true;
                        crfVersion = (CRFVersionBean) versionDAO.findByPK(eventCRF.getCRFVersionId());
                    } else
                        crfVersion = (CRFVersionBean) versionDAO.findByPK(eventDefCrf.getDefaultVersionId());
                    if (validStatus) {
                        String formUrl = null;
                        if (!itemDataExists)
                            formUrl = createEnketoUrl(studyOID, crfVersion, nextEvent, ssoid);
                        else
                            formUrl = createEditUrl(studyOID, crfVersion, nextEvent, ssoid);
                        formDatas.add(getFormDataPerCrf(crfVersion, nextEvent, eventCrfs, crfDAO, formUrl, itemDataExists));
                    }
                }
            }
            return createOdm(study, studySubjectBean, nextEvent, formDatas);
        } else {
            logger.debug("Unable to find next event for subject.");
        }
    } catch (Exception e) {
        logger.error(e.getMessage());
        logger.error(ExceptionUtils.getStackTrace(e));
    }
    return odm;
}

Example 33 with EventDefinitionCRFBean

use of org.akaza.openclinica.bean.managestudy.EventDefinitionCRFBean in project OpenClinica by OpenClinica.

the class AnonymousFormControllerV2 method getEnketoForm.

/**
 * @api {post} /pages/api/v2/anonymousform/form Retrieve anonymous form URL
 * @apiName getEnketoForm
 * @apiPermission Module participate - enabled
 * @apiVersion 3.8.0
 * @apiParam {String} studyOid Study Oid
 * @apiParam {String} submissionUri Submission Url
 * @apiGroup Form
 * @apiDescription Retrieve anonymous form url.
 * @apiParamExample {json} Request-Example:
 *                  {
 *                  "studyOid": "S_BL101",
 *                  "submissionUri": "abcde"
 *                  }
 * @apiSuccessExample {json} Success-Response:
 *                    HTTP/1.1 200 OK
 *                    {
 *                    "url": "http://localhost:8006/::YYYi?iframe=true&ecid=abb764d026830e98b895ece6d9dcaf3c5e817983cc00a4ebfaabcb6c3700b4d5",
 *                    "offline": "false"
 *                    }
 */
@RequestMapping(value = "/form", method = RequestMethod.POST)
public ResponseEntity<AnonymousUrlResponse> getEnketoForm(@RequestBody HashMap<String, String> map) throws Exception {
    ResourceBundleProvider.updateLocale(new Locale("en_US"));
    EventDefinitionCrfTagService tagService = (EventDefinitionCrfTagService) SpringServletAccess.getApplicationContext(context).getBean("eventDefinitionCrfTagService");
    String formUrl = null;
    String studyOid = map.get("studyOid");
    if (!mayProceed(studyOid))
        return new ResponseEntity<AnonymousUrlResponse>(org.springframework.http.HttpStatus.NOT_ACCEPTABLE);
    String submissionUri = map.get("submissionUri");
    if (submissionUri != "" && submissionUri != null) {
        StudyBean study = getStudy(studyOid);
        EventDefinitionCRFDAO edcdao = new EventDefinitionCRFDAO(dataSource);
        ArrayList<EventDefinitionCRFBean> edcBeans = edcdao.findAllSubmissionUriAndStudyId(submissionUri, study.getId());
        if (edcBeans.size() != 0) {
            EventDefinitionCRFBean edcBean = edcBeans.get(0);
            CRFDAO crfdao = new CRFDAO(dataSource);
            CRFVersionDAO cvdao = new CRFVersionDAO(dataSource);
            StudyEventDefinitionDAO seddao = new StudyEventDefinitionDAO(dataSource);
            CRFVersionBean crfVersionBean = (CRFVersionBean) cvdao.findByPK(edcBean.getDefaultVersionId());
            CRFBean crf = (CRFBean) crfdao.findByPK(crfVersionBean.getCrfId());
            StudyBean sBean = (StudyBean) sdao.findByPK(edcBean.getStudyId());
            StudyEventDefinitionBean sedBean = (StudyEventDefinitionBean) seddao.findByPK(edcBean.getStudyEventDefinitionId());
            String tagPath = sedBean.getOid() + "." + crf.getOid();
            boolean isOffline = tagService.getEventDefnCrfOfflineStatus(2, tagPath, true);
            String offline = null;
            if (isOffline)
                offline = "true";
            else
                offline = "false";
            formUrl = createAnonymousEnketoUrl(sBean.getOid(), crfVersionBean, edcBean, isOffline);
            AnonymousUrlResponse anonResponse = new AnonymousUrlResponse(formUrl, offline, crf.getName(), crfVersionBean.getDescription());
            return new ResponseEntity<AnonymousUrlResponse>(anonResponse, org.springframework.http.HttpStatus.OK);
        } else {
            return new ResponseEntity<AnonymousUrlResponse>(org.springframework.http.HttpStatus.NOT_ACCEPTABLE);
        }
    } else {
        return new ResponseEntity<AnonymousUrlResponse>(org.springframework.http.HttpStatus.NOT_ACCEPTABLE);
    }
}

Example 34 with EventDefinitionCRFBean

use of org.akaza.openclinica.bean.managestudy.EventDefinitionCRFBean in project OpenClinica by OpenClinica.

the class FormBeanUtil method createDisplaySectionWithItemGroups.

/**
 * Create a DisplaySectionBean with a list of ItemGroupBeans. NOTE:
 * unGrouped Items are not included
 *
 * @param study
 *            The StudyBean
 * @param sectionId
 *            The Section ID associated with the Items, which end up
 *            providing the content of the tables.
 * @param crfVersionId
 *            The CRF version ID associated with the Items.
 * @param studyEventId
 *            The Study Event ID associated with the CRF Version ID.
 * @param sm
 *            A SessionManager, from which DataSources are acquired for the
 *            DAO objects.
 * @return A DisplaySectionBean.
 */
public DisplaySectionBean createDisplaySectionWithItemGroups(StudyBean study, int sectionId, EventCRFBean eventCrfBean, int studyEventId, SessionManager sm, int eventDefinitionCRFId, ServletContext context) {
    DisplaySectionBean dBean = new DisplaySectionBean();
    ItemGroupDAO formGroupDAO = new ItemGroupDAO(sm.getDataSource());
    ItemGroupMetadataDAO igMetaDAO = new ItemGroupMetadataDAO(sm.getDataSource());
    ItemDAO itemDao = new ItemDAO(sm.getDataSource());
    ItemFormMetadataDAO metaDao = new ItemFormMetadataDAO(sm.getDataSource());
    List<ItemGroupBean> arrList = formGroupDAO.findLegitGroupBySectionId(sectionId);
    // all items associated with the section, including those not in a group
    List<ItemFormMetadataBean> allMetas = new ArrayList<ItemFormMetadataBean>();
    try {
        allMetas = metaDao.findAllBySectionId(sectionId);
    } catch (OpenClinicaException oce) {
        logger.info("oce.getOpenClinicaMessage() = " + oce.getOpenClinicaMessage());
    }
    // Collections.sort(allMetas);
    if (arrList.isEmpty())
        return dBean;
    // Find out whether there are any checkboxes/radios/select elements
    // and if so, get any null values
    // associated with them
    List<String> nullValuesList = new ArrayList<String>();
    boolean itemsHaveChecksRadios = itemsIncludeChecksRadiosSelects(allMetas);
    // "+eventDefinitionCRFId);
    if (eventDefinitionCRFId <= 0) {
        EventDefinitionCRFDAO edcdao = new EventDefinitionCRFDAO(sm.getDataSource());
        EventDefinitionCRFBean edcBean = edcdao.findByStudyEventIdAndCRFVersionId(study, studyEventId, eventCrfBean.getCRFVersionId());
        eventDefinitionCRFId = edcBean.getId();
    }
    // "+eventDefinitionCRFId);
    if (itemsHaveChecksRadios && eventDefinitionCRFId > 0) {
        // method returns null values as a List<String>
        nullValuesList = this.getNullValuesByEventCRFDefId(eventDefinitionCRFId, sm.getDataSource());
    }
    // Get the items associated with each group
    List<ItemBean> itBeans;
    List<DisplayItemBean> displayItems;
    List<DisplayItemGroupBean> displayFormBeans = new ArrayList<DisplayItemGroupBean>();
    DisplayItemGroupBean displayItemGBean;
    for (ItemGroupBean itemGroup : arrList) {
        itBeans = itemDao.findAllItemsByGroupId(itemGroup.getId(), eventCrfBean.getCRFVersionId());
        List<ItemGroupMetadataBean> metadata = igMetaDAO.findMetaByGroupAndSection(itemGroup.getId(), eventCrfBean.getCRFVersionId(), sectionId);
        if (!metadata.isEmpty()) {
            // for a given crf version, all the items in the same group
            // have the same group metadata
            // so we can get one of them and set metadata for the group
            ItemGroupMetadataBean meta = metadata.get(0);
            itemGroup.setMeta(meta);
        }
        // include arrayList parameter until I determine difference in
        // classes
        displayItems = getDisplayBeansFromItems(itBeans, sm.getDataSource(), eventCrfBean, sectionId, nullValuesList, context);
        displayItemGBean = this.createDisplayFormGroup(displayItems, itemGroup);
        displayFormBeans.add(displayItemGBean);
    }
    // We still have to sort these display item group beans on their
    // ItemGroupMetadataBean?
    // then number their ordinals accordingly
    Collections.sort(displayFormBeans, new Comparator<DisplayItemGroupBean>() {

        public int compare(DisplayItemGroupBean displayItemGroupBean, DisplayItemGroupBean displayItemGroupBean1) {
            return displayItemGroupBean.getGroupMetaBean().compareTo(displayItemGroupBean1.getGroupMetaBean());
        }
    });
    // Now provide the display item group beans with an ordinal
    int digOrdinal = 0;
    for (DisplayItemGroupBean digBean : displayFormBeans) {
        digBean.setOrdinal(++digOrdinal);
    }
    dBean.setDisplayFormGroups(displayFormBeans);
    return dBean;
}

Example 35 with EventDefinitionCRFBean

use of org.akaza.openclinica.bean.managestudy.EventDefinitionCRFBean in project OpenClinica by OpenClinica.

the class FormBeanUtil method getNullValuesByEventCRFDefId.

public List<String> getNullValuesByEventCRFDefId(int eventDefinitionCRFId, DataSource dataSource) {
    if (eventDefinitionCRFId < 1 || dataSource == null) {
        return new ArrayList<String>();
    }
    List<String> nullValuesList = new ArrayList<String>();
    // hold the bean's return value
    List<NullValue> nullObjectList = new ArrayList<NullValue>();
    EventDefinitionCRFBean eventCRFDefBean;
    EventDefinitionCRFDAO eventDefinitionCRFDAO = new EventDefinitionCRFDAO(dataSource);
    eventCRFDefBean = (EventDefinitionCRFBean) eventDefinitionCRFDAO.findByPK(eventDefinitionCRFId);
    nullObjectList = eventCRFDefBean.getNullValuesList();
    if (nullObjectList == null) {
        return new ArrayList<String>();
    }
    for (NullValue nullVal : nullObjectList) {
        nullValuesList.add(nullVal.getName());
    }
    return nullValuesList;
}