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Example 81 with StudyBean

use of org.akaza.openclinica.bean.managestudy.StudyBean in project OpenClinica by OpenClinica.

the class UrlRewriteServlet method getOpenClinicaResourceFromURL.

/**
 * Method to parse the request URL parameters and get the respective
 * database identifiers
 *
 * @param URLPath
 *            - example "S_CPCS/320999/SE_CPCS%5B1%5D/F_CPCS_1"
 * @param queryString
 *            - example
 *            "format=html&mode=view&tabId=1&exitTo=ViewStudySubject"
 * @return
 */
public OpenClinicaResource getOpenClinicaResourceFromURL(String URLPath) /*
                                                                            * ,
                                                                            * String
                                                                            * queryString
                                                                            */
{
    OpenClinicaResource openClinicaResource = new OpenClinicaResource();
    if ((null != URLPath) && (!URLPath.equals(""))) {
        if (URLPath.contains("/")) {
            String[] tokens = URLPath.split("/");
            if (tokens.length != 0) {
                String URLParamValue = "";
                StudyDAO stdao = new StudyDAO(getDataSource());
                StudySubjectDAO ssubdao = new StudySubjectDAO(getDataSource());
                StudyEventDefinitionDAO sedefdao = new StudyEventDefinitionDAO(getDataSource());
                CRFDAO crfdao = new CRFDAO(getDataSource());
                CRFVersionDAO crfvdao = new CRFVersionDAO(getDataSource());
                ItemDAO idao = new ItemDAO(getDataSource());
                ItemGroupDAO igdao = new ItemGroupDAO(getDataSource());
                StudyEventDAO sedao = new StudyEventDAO(getDataSource());
                StudyBean study = null;
                StudySubjectBean subject = null;
                StudyEventDefinitionBean sed = null;
                CRFBean c = null;
                CRFVersionBean cv = null;
                ItemBean item = null;
                ItemGroupBean ig = null;
                StudyEventBean studyEvent = null;
                Integer studySubjectId = 0;
                Integer eventDefId = 0;
                Integer eventRepeatKey = 0;
                for (int i = 0; i < tokens.length; i++) {
                    // when interpreting these request URL parameters, the
                    // assumption is that the position of
                    // each type of parameters will be fixed. Meaning, study
                    // OID is always going to be at the start
                    // followed by StudySubjectKey followed by study event
                    // definition OID followed by
                    // study event repeat key followed by form OID followed
                    // by item group OID followed by
                    // item group repeat key followed by item OID
                    // It can also be done based on the start of OID value
                    // (example study OID presently
                    // starts with 'S_' but we will have to change it if we
                    // change the method of generating
                    // oID values in future.
                    URLParamValue = tokens[i].trim();
                    // System.out.println("URLParamValue::"+URLParamValue);
                    logger.info("URLPAramValue::" + URLParamValue);
                    if ((null != URLParamValue) && (!URLParamValue.equals(""))) {
                        switch(i) {
                            case 0:
                                {
                                    // study OID
                                    study = stdao.findByOid(URLParamValue);
                                    // validate study OID
                                    if (study == null) {
                                        openClinicaResource.setInValid(true);
                                        openClinicaResource.getMessages().add(resexception.getString("invalid_study_oid"));
                                        return openClinicaResource;
                                    } else {
                                        openClinicaResource.setStudyOID(URLParamValue);
                                        if (null != study) {
                                            openClinicaResource.setStudyID(study.getId());
                                        }
                                    }
                                    break;
                                }
                            case 1:
                                {
                                    // StudySubjectKey
                                    subject = ssubdao.findByOidAndStudy(URLParamValue, study.getId());
                                    // validate subject OID
                                    if (subject == null) {
                                        openClinicaResource.setInValid(true);
                                        openClinicaResource.getMessages().add(resexception.getString("invalid_subject_oid"));
                                        return openClinicaResource;
                                    } else {
                                        openClinicaResource.setStudySubjectOID(URLParamValue);
                                        if (null != subject) {
                                            studySubjectId = subject.getId();
                                            openClinicaResource.setStudySubjectID(studySubjectId);
                                        }
                                    }
                                    break;
                                }
                            case 2:
                                {
                                    // study event definition OID
                                    // separate study event OID and study event
                                    // repeat key
                                    String seoid = "";
                                    String eventOrdinal = "";
                                    if (URLParamValue.contains("%5B") && URLParamValue.contains("%5D")) {
                                        seoid = URLParamValue.substring(0, URLParamValue.indexOf("%5B"));
                                        openClinicaResource.setStudyEventDefOID(seoid);
                                        eventOrdinal = URLParamValue.substring(URLParamValue.indexOf("%5B") + 3, URLParamValue.indexOf("%5D"));
                                    } else if (URLParamValue.contains("[") && URLParamValue.contains("]")) {
                                        seoid = URLParamValue.substring(0, URLParamValue.indexOf("["));
                                        logger.info("seoid" + seoid);
                                        openClinicaResource.setStudyEventDefOID(seoid);
                                        eventOrdinal = URLParamValue.substring(URLParamValue.indexOf("[") + 1, URLParamValue.indexOf("]"));
                                        logger.info("eventOrdinal::" + eventOrdinal);
                                    } else {
                                        // event ordinal not specified
                                        openClinicaResource.setInValid(true);
                                        openClinicaResource.getMessages().add(resexception.getString("event_ordinal_not_specified"));
                                        return openClinicaResource;
                                    }
                                    if ((null != seoid) && (null != study)) {
                                        sed = sedefdao.findByOidAndStudy(seoid, study.getId(), study.getParentStudyId());
                                        // validate study event oid
                                        if (null == sed) {
                                            openClinicaResource.setInValid(true);
                                            openClinicaResource.getMessages().add(resexception.getString("invalid_event_oid"));
                                            return openClinicaResource;
                                        } else {
                                            eventDefId = sed.getId();
                                            openClinicaResource.setStudyEventDefID(eventDefId);
                                        }
                                    }
                                    if (null != eventRepeatKey) {
                                        eventRepeatKey = Integer.parseInt(eventOrdinal.trim());
                                        // validate the event ordinal specified exists in database
                                        studyEvent = (StudyEventBean) sedao.findByStudySubjectIdAndDefinitionIdAndOrdinal(subject.getId(), sed.getId(), eventRepeatKey);
                                        // this method return new StudyEvent (not null) even if no studyEvent can be found
                                        if (null == studyEvent || studyEvent.getId() == 0) {
                                            openClinicaResource.setInValid(true);
                                            openClinicaResource.getMessages().add(resexception.getString("invalid_event_ordinal"));
                                            return openClinicaResource;
                                        } else {
                                            openClinicaResource.setStudyEventRepeatKey(eventRepeatKey);
                                        }
                                    }
                                    break;
                                }
                            case 3:
                                {
                                    // form OID
                                    openClinicaResource.setFormVersionOID(URLParamValue);
                                    // validate the crf version oid
                                    cv = crfvdao.findByOid(URLParamValue);
                                    if (cv == null) {
                                        openClinicaResource.setInValid(true);
                                        openClinicaResource.getMessages().add(resexception.getString("invalid_crf_oid"));
                                        return openClinicaResource;
                                    } else {
                                        openClinicaResource.setFormVersionID(cv.getId());
                                        // validate if crf is removed
                                        if (cv.getStatus().equals(Status.DELETED)) {
                                            openClinicaResource.setInValid(true);
                                            openClinicaResource.getMessages().add(resexception.getString("removed_crf"));
                                            return openClinicaResource;
                                        } else {
                                            if (null != study) {
                                                // cv =
                                                // crfvdao.findByCrfVersionOidAndStudy(URLParamValue,
                                                // study.getId());
                                                // if (null != cv) {
                                                // openClinicaResource.setFormVersionID(cv.getId());
                                                // openClinicaResource.setFormID(cv.getCrfId());
                                                // }
                                                HashMap studySubjectCRFDataDetails = sedao.getStudySubjectCRFData(study, studySubjectId, eventDefId, URLParamValue, eventRepeatKey);
                                                if ((null != studySubjectCRFDataDetails) && (studySubjectCRFDataDetails.size() != 0)) {
                                                    if (studySubjectCRFDataDetails.containsKey("event_crf_id")) {
                                                        openClinicaResource.setEventCrfId((Integer) studySubjectCRFDataDetails.get("event_crf_id"));
                                                    }
                                                    if (studySubjectCRFDataDetails.containsKey("event_definition_crf_id")) {
                                                        openClinicaResource.setEventDefinitionCrfId((Integer) studySubjectCRFDataDetails.get("event_definition_crf_id"));
                                                    }
                                                    if (studySubjectCRFDataDetails.containsKey("study_event_id")) {
                                                        openClinicaResource.setStudyEventId((Integer) studySubjectCRFDataDetails.get("study_event_id"));
                                                    }
                                                } else {
                                                    // no data was found in the database for the combination of parameters in the RESTful URL. There are 2 possible reasons:
                                                    // a. The data entry is not started yet for this event CRF. As of OpenClinica 3.1.3 we have not implemented the
                                                    // RESTful URL functionality in this case.
                                                    // b. The form version OID entered in the URL could be different than the one used in the data entry
                                                    openClinicaResource.setInValid(true);
                                                    openClinicaResource.getMessages().add(resexception.getString("either_no_data_for_crf_or_data_entry_not_started"));
                                                    return openClinicaResource;
                                                }
                                            }
                                        }
                                    }
                                    break;
                                }
                            case 4:
                                {
                                    // item group OID
                                    // separate item group OID and item group
                                    // repeat key
                                    String igoid = "";
                                    String igRepeatKey = "";
                                    if (URLParamValue.contains("[")) {
                                        igoid = URLParamValue.substring(1, URLParamValue.indexOf("["));
                                        igRepeatKey = URLParamValue.substring(URLParamValue.indexOf("["), URLParamValue.indexOf("}]"));
                                    }
                                    if ((null != igoid) && (null != cv)) {
                                        ig = igdao.findByOidAndCrf(URLParamValue, cv.getCrfId());
                                        if (null != ig) {
                                            openClinicaResource.setItemGroupID(ig.getId());
                                        }
                                    }
                                    if (null != igRepeatKey) {
                                        openClinicaResource.setItemGroupRepeatKey(Integer.parseInt(igRepeatKey));
                                    }
                                    break;
                                }
                            case 5:
                                {
                                    // item = idao.find
                                    break;
                                }
                        }
                    // switch end
                    }
                }
            }
        }
    }
    return openClinicaResource;
}
Also used : CRFDAO(org.akaza.openclinica.dao.admin.CRFDAO) ItemBean(org.akaza.openclinica.bean.submit.ItemBean) CRFVersionDAO(org.akaza.openclinica.dao.submit.CRFVersionDAO) ItemDAO(org.akaza.openclinica.dao.submit.ItemDAO) HashMap(java.util.HashMap) StudyBean(org.akaza.openclinica.bean.managestudy.StudyBean) ItemGroupDAO(org.akaza.openclinica.dao.submit.ItemGroupDAO) StudyEventDefinitionBean(org.akaza.openclinica.bean.managestudy.StudyEventDefinitionBean) StudyEventBean(org.akaza.openclinica.bean.managestudy.StudyEventBean) StudySubjectDAO(org.akaza.openclinica.dao.managestudy.StudySubjectDAO) CRFBean(org.akaza.openclinica.bean.admin.CRFBean) StudyEventDefinitionDAO(org.akaza.openclinica.dao.managestudy.StudyEventDefinitionDAO) StudySubjectBean(org.akaza.openclinica.bean.managestudy.StudySubjectBean) StudyEventDAO(org.akaza.openclinica.dao.managestudy.StudyEventDAO) CRFVersionBean(org.akaza.openclinica.bean.submit.CRFVersionBean) ItemGroupBean(org.akaza.openclinica.bean.submit.ItemGroupBean) StudyDAO(org.akaza.openclinica.dao.managestudy.StudyDAO)

Example 82 with StudyBean

use of org.akaza.openclinica.bean.managestudy.StudyBean in project OpenClinica by OpenClinica.

the class AccountController method buildParticipantUserName.

private HashMap buildParticipantUserName(StudySubjectBean studySubjectBean) {
    HashMap<String, String> map = new HashMap();
    String studySubjectOid = studySubjectBean.getOid();
    Integer studyId = studySubjectBean.getStudyId();
    StudyBean study = getParentStudy(studyId);
    Integer pStudyId = study.getId();
    String pUserName = study.getOid() + "." + studySubjectOid;
    map.put("pUserName", pUserName);
    map.put("pStudyId", pStudyId.toString());
    map.put("studySubjectOid", studySubjectOid);
    return map;
}
Also used : HashMap(java.util.HashMap) StudyBean(org.akaza.openclinica.bean.managestudy.StudyBean)

Example 83 with StudyBean

use of org.akaza.openclinica.bean.managestudy.StudyBean in project OpenClinica by OpenClinica.

the class AccountController method getAccount3.

/**
 * @api {get} /pages/accounts/study/:studyOid/studysubject/:studySubjectId Retrieve a user account - participant
 * @apiName getAccount3
 * @apiPermission Module participate - enabled & admin
 * @apiVersion 3.8.0
 * @apiParam {String} studyOid Study Oid.
 * @apiParam {String} studySubjectId Study Subject Id .
 * @apiGroup User Account
 * @apiDescription Retrieves the participant user account with the given studySubjectId and studyOid
 * @apiParamExample {json} Request-Example:
 *                  {
 *                  "studyOid": " S_BL101",
 *                  "studySubjectId": "Sub100"
 *                  }
 * @apiSuccessExample {json} Success-Response:
 *                    HTTP/1.1 200 OK
 *                    {
 *                    "lName": "",
 *                    "mobile": "JTaa7WGRdH5dGs42XyTrgA==",
 *                    "accessCode": "5s02UFpiMBijWuzaxSOojg==",
 *                    "password": "5baa61e4c9b93f3f0682250b6cf8331b7ee68fd8",
 *                    "email": "XzJadh3l3V7uUoPCggbSoIfoNW8IQU3qsvrtHfJH7J0=",
 *                    "userName": "S_BL101.SS_SUB100",
 *                    "studySubjectId": null,
 *                    "fName": "pdyGCN1CdAKIGOUEERz/yQ=="
 *                    }
 */
@RequestMapping(value = "/study/{studyOid}/studysubject/{studySubjectId}", method = RequestMethod.GET)
public ResponseEntity<UserDTO> getAccount3(@PathVariable("studyOid") String studyOid, @PathVariable("studySubjectId") String studySubjectId) throws Exception {
    ResourceBundleProvider.updateLocale(new Locale("en_US"));
    uDTO = null;
    StudyBean parentStudy = getParentStudy(studyOid);
    String oid = parentStudy.getOid();
    StudySubjectBean studySubjectBean = getStudySubject(studySubjectId, parentStudy);
    if (isStudyASiteLevelStudy(studyOid))
        return new ResponseEntity<UserDTO>(uDTO, org.springframework.http.HttpStatus.NOT_ACCEPTABLE);
    if (!mayProceed(oid, studySubjectBean))
        return new ResponseEntity<UserDTO>(uDTO, org.springframework.http.HttpStatus.NOT_ACCEPTABLE);
    if (isStudyDoesNotExist(oid))
        return new ResponseEntity<UserDTO>(uDTO, org.springframework.http.HttpStatus.NOT_ACCEPTABLE);
    if (isStudySubjectDoesNotExist(studySubjectBean))
        return new ResponseEntity<UserDTO>(uDTO, org.springframework.http.HttpStatus.NOT_ACCEPTABLE);
    // build UserName
    HashMap<String, String> mapValues = buildParticipantUserName(studySubjectBean);
    // Participant User Name
    String pUserName = mapValues.get("pUserName");
    UserAccountDAO udao = new UserAccountDAO(dataSource);
    UserAccountBean userAccountBean = (UserAccountBean) udao.findByUserName(pUserName);
    if (!userAccountBean.isActive()) {
        uDTO = new UserDTO();
        return new ResponseEntity<UserDTO>(uDTO, org.springframework.http.HttpStatus.OK);
    } else {
        buildUserDTO(userAccountBean);
        return new ResponseEntity<UserDTO>(uDTO, org.springframework.http.HttpStatus.OK);
    }
}
Also used : Locale(java.util.Locale) ResponseEntity(org.springframework.http.ResponseEntity) StudySubjectBean(org.akaza.openclinica.bean.managestudy.StudySubjectBean) StudyBean(org.akaza.openclinica.bean.managestudy.StudyBean) UserDTO(org.akaza.openclinica.bean.login.UserDTO) UserAccountBean(org.akaza.openclinica.bean.login.UserAccountBean) UserAccountDAO(org.akaza.openclinica.dao.login.UserAccountDAO) RequestMapping(org.springframework.web.bind.annotation.RequestMapping)

Example 84 with StudyBean

use of org.akaza.openclinica.bean.managestudy.StudyBean in project OpenClinica by OpenClinica.

the class SDVController method viewAllSubjectFormHandler.

@RequestMapping("/viewAllSubjectSDVform")
public ModelMap viewAllSubjectFormHandler(HttpServletRequest request, HttpServletResponse response, @RequestParam("studyId") int studyId) {
    ModelMap gridMap = new ModelMap();
    StudyDAO studyDAO = new StudyDAO(dataSource);
    // StudyEventDAO studyEventDAO = new StudyEventDAO(dataSource);
    StudyBean studyBean = (StudyBean) studyDAO.findByPK(studyId);
    String pattern = "MM/dd/yyyy";
    SimpleDateFormat sdf = new SimpleDateFormat(pattern);
    // List<StudyEventBean> studyEventBeans = studyEventDAO.findAllByStudy(studyBean);
    // List<EventCRFBean> eventCRFBeans = sdvUtil.getAllEventCRFs(studyEventBeans);
    // set up the parameters to take part in filtering
    ServletRequestDataBinder dataBinder = new ServletRequestDataBinder(new SdvFilterDataBean());
    dataBinder.setAllowedFields(new String[] { "study_subject_id", "studyEventDefinition", "studyEventStatus", "eventCRFStatus", "sdvRequirement", "eventcrfSDVStatus", "startUpdatedDate", "endDate", "eventCRFName" });
    dataBinder.registerCustomEditor(java.util.Date.class, new CustomDateEditor(sdf, true));
    dataBinder.bind(request);
    BindingResult bindingResult = dataBinder.getBindingResult();
    // eventCRFBeans = sdvUtil.filterEventCRFs(eventCRFBeans,bindingResult);
    // set up request attributes for sidebar
    // Not necessary when using old page design...
    // setUpSidebar(request);
    request.setAttribute("studyId", studyId);
    // We need a study subject id for the first tab; take it somewhat arbitrarily from the first study event bean
    /* int studySubjectId = 0;

        StudyEventBean studyBeanUrl = studyEventBeans.get(0);
        if(studyBeanUrl != null) {
            studySubjectId= studyBeanUrl.getStudySubjectId();
        }
        request.setAttribute("studySubjectId",studySubjectId);*/
    // set up the elements for the view's filter box
    /*sdvUtil.prepareSDVSelectElements(request,studyBean);*/
    ArrayList<String> pageMessages = (ArrayList<String>) request.getAttribute("pageMessages");
    if (pageMessages == null) {
        pageMessages = new ArrayList<String>();
    }
    request.setAttribute("pageMessages", pageMessages);
    String sdvMatrix = sdvUtil.renderEventCRFTableWithLimit(request, studyId, "");
    gridMap.addAttribute(SUBJECT_SDV_TABLE_ATTRIBUTE, sdvMatrix);
    return gridMap;
}
Also used : BindingResult(org.springframework.validation.BindingResult) CustomDateEditor(org.springframework.beans.propertyeditors.CustomDateEditor) ModelMap(org.springframework.ui.ModelMap) StudyBean(org.akaza.openclinica.bean.managestudy.StudyBean) ServletRequestDataBinder(org.springframework.web.bind.ServletRequestDataBinder) ArrayList(java.util.ArrayList) SdvFilterDataBean(org.akaza.openclinica.controller.helper.SdvFilterDataBean) StudyDAO(org.akaza.openclinica.dao.managestudy.StudyDAO) SimpleDateFormat(java.text.SimpleDateFormat) RequestMapping(org.springframework.web.bind.annotation.RequestMapping)

Example 85 with StudyBean

use of org.akaza.openclinica.bean.managestudy.StudyBean in project OpenClinica by OpenClinica.

the class StudyController method createNewStudy.

/**
 * @api {post} /pages/auth/api/v1/studies/ Create a study
 * @apiName createNewStudy
 * @apiPermission Authenticate using api-key. admin
 * @apiVersion 3.8.0
 * @apiParam {String} uniqueProtococlId Study unique protocol ID.
 * @apiParam {String} briefTitle Brief Title .
 * @apiParam {String} principalInvestigator Principal Investigator Name.
 * @apiParam {Integer} expectedTotalEnrollment Expected Total Enrollment number
 * @apiParam {String} sponsor Sponsor name.
 * @apiParam {String} protocolType 'Interventional' or ' Observational'
 * @apiParam {String} status 'Available' or 'Design'
 * @apiParam {String} briefSummary Study Summary
 * @apiParam {Date} startDate Start date
 * @apiParam {Array} assignUserRoles Assign Users to Roles for this Study.
 * @apiGroup Study
 * @apiHeader {String} api_key Users unique access-key.
 * @apiDescription This API is to create a New Study in OC.
 *                 All the fields are required fields and can't be left blank.
 *                 You need to provide your Api-key to be connected.
 * @apiParamExample {json} Request-Example:
 *                  {
 *                  "briefTitle": "Study Protocol ID Name",
 *                  "principalInvestigator": "Principal Investigator Name",
 *                  "expectedTotalEnrollment": "10",
 *                  "sponsor": "Sponsor Name",
 *                  "protocolType": "Interventional",
 *                  "status": "available",
 *                  "assignUserRoles": [
 *                  { "username": "usera", "role": "Data Manager" },
 *                  { "username": "userb", "role": "Study Director" },
 *                  { "username": "userc", "role": "Data Specialist" },
 *                  { "username": "userd", "role": "Monitor" },
 *                  { "username": "usere", "role": "Data Entry Person" }
 *                  ],
 *                  "uniqueProtocolID": "Study Protocol ID",
 *                  "briefSummary": "Study Summary",
 *                  "startDate": "2011-11-11"
 *                  }
 * @apiErrorExample {json} Error-Response:
 *                  HTTP/1.1 400 Bad Request
 *                  {
 *                  "message": "VALIDATION FAILED",
 *                  "status": "available",
 *                  "principalInvestigator": "Principal Investigator Name",
 *                  "expectedTotalEnrollment": "10",
 *                  "sponsor": "Sponsor Name",
 *                  "protocolType": "Interventional",
 *                  "errors": [
 *                  {"field": "UniqueProtocolId","resource": "Study Object","code": "Unique Protocol Id exist in the System"}
 *                  ],
 *                  "startDate": "2011-11-11",
 *                  "assignUserRoles": [
 *                  {"username": "usera","role": "Data Manager"},
 *                  {"username": "userb","role": "Study Director"},
 *                  {"username": "userc","role": "Data Specialist"}
 *                  ],
 *                  "uniqueProtocolID": "Study Protocol ID",
 *                  "briefTitle": "Study Protocol ID",
 *                  "briefSummary": "Study Summary",
 *                  "studyOid": null
 *                  }
 * @apiSuccessExample {json} Success-Response:
 *                    HTTP/1.1 200 OK
 *                    {
 *                    "message": "SUCCESS",
 *                    "uniqueProtocolID": "Study Protocol ID",
 *                    "studyOid": "S_STUDYPRO",
 *                    }
 */
@RequestMapping(value = "/", method = RequestMethod.POST)
public ResponseEntity<Object> createNewStudy(HttpServletRequest request, @RequestBody HashMap<String, Object> map) throws Exception {
    ArrayList<ErrorObject> errorObjects = new ArrayList();
    StudyBean studyBean = null;
    System.out.println("I'm in Create Study");
    ResponseEntity<Object> response = null;
    String validation_failed_message = "VALIDATION FAILED";
    String validation_passed_message = "SUCCESS";
    String uniqueProtocolID = (String) map.get("uniqueProtocolID");
    String name = (String) map.get("briefTitle");
    String principalInvestigator = (String) map.get("principalInvestigator");
    String briefSummary = (String) map.get("briefSummary");
    String sponsor = (String) map.get("sponsor");
    String protocolType = (String) map.get("protocolType");
    String startDate = (String) map.get("startDate");
    String expectedTotalEnrollment = (String) map.get("expectedTotalEnrollment");
    String status = (String) map.get("status");
    ArrayList<UserRole> assignUserRoles = (ArrayList<UserRole>) map.get("assignUserRoles");
    ArrayList<UserRole> userList = new ArrayList<>();
    if (assignUserRoles != null) {
        for (Object userRole : assignUserRoles) {
            UserRole uRole = new UserRole();
            uRole.setUsername((String) ((HashMap<String, Object>) userRole).get("username"));
            uRole.setRole((String) ((HashMap<String, Object>) userRole).get("role"));
            udao = new UserAccountDAO(dataSource);
            UserAccountBean assignedUserBean = (UserAccountBean) udao.findByUserName(uRole.getUsername());
            if (assignedUserBean == null || !assignedUserBean.isActive()) {
                ErrorObject errorOBject = createErrorObject("Study Object", "The Assigned Username " + uRole.getUsername() + " is not a Valid User", "Assigned User");
                errorObjects.add(errorOBject);
            }
            ResourceBundle resterm = org.akaza.openclinica.i18n.util.ResourceBundleProvider.getTermsBundle();
            if (getStudyRole(uRole.getRole(), resterm) == null) {
                ErrorObject errorOBject = createErrorObject("Study Object", "Assigned Role for " + uRole.getUsername() + " is not a Valid Study Role", "Assigned Role");
                errorObjects.add(errorOBject);
            }
            userList.add(uRole);
        }
    }
    StudyDTO studyDTO = buildStudyDTO(uniqueProtocolID, name, briefSummary, principalInvestigator, sponsor, expectedTotalEnrollment, protocolType, status, startDate, userList);
    if (uniqueProtocolID == null) {
        ErrorObject errorOBject = createErrorObject("Study Object", "Missing Field", "UniqueProtocolID");
        errorObjects.add(errorOBject);
    } else {
        uniqueProtocolID = uniqueProtocolID.trim();
    }
    if (name == null) {
        ErrorObject errorOBject = createErrorObject("Study Object", "Missing Field", "BriefTitle");
        errorObjects.add(errorOBject);
    } else {
        name = name.trim();
    }
    if (principalInvestigator == null) {
        ErrorObject errorOBject = createErrorObject("Study Object", "Missing Field", "PrincipalInvestigator");
        errorObjects.add(errorOBject);
    } else {
        principalInvestigator = principalInvestigator.trim();
    }
    if (briefSummary == null) {
        ErrorObject errorOBject = createErrorObject("Study Object", "Missing Field", "BriefSummary");
        errorObjects.add(errorOBject);
    } else {
        briefSummary = briefSummary.trim();
    }
    if (sponsor == null) {
        ErrorObject errorOBject = createErrorObject("Study Object", "Missing Field", "Sponsor");
        errorObjects.add(errorOBject);
    } else {
        sponsor = sponsor.trim();
    }
    if (protocolType == null) {
        ErrorObject errorOBject = createErrorObject("Study Object", "Missing Field", "ProtocolType");
        errorObjects.add(errorOBject);
    } else {
        protocolType = protocolType.trim();
    }
    if (startDate == null) {
        ErrorObject errorOBject = createErrorObject("Study Object", "Missing Field", "StartDate");
        errorObjects.add(errorOBject);
    } else {
        startDate = startDate.trim();
    }
    if (expectedTotalEnrollment == null) {
        ErrorObject errorOBject = createErrorObject("Study Object", "Missing Field", "ExpectedTotalEnrollment");
        errorObjects.add(errorOBject);
    } else {
        expectedTotalEnrollment = expectedTotalEnrollment.trim();
    }
    if (status == null) {
        ErrorObject errorOBject = createErrorObject("Study Object", "Missing Field", "Status");
        errorObjects.add(errorOBject);
    } else {
        status = status.trim();
    }
    if (assignUserRoles == null) {
        ErrorObject errorOBject = createErrorObject("Study Object", "Missing Field", "AssignUserRoles");
        errorObjects.add(errorOBject);
    }
    if (status != null && !status.equalsIgnoreCase("available") && !status.equalsIgnoreCase("design") && !status.equals("")) {
        ErrorObject errorOBject = createErrorObject("Study Object", "Status Field Should have 'Available' or 'Design' Status only, If left empty , will default to 'Design' Mode", "Status");
        errorObjects.add(errorOBject);
    }
    request.setAttribute("uniqueProId", uniqueProtocolID);
    // Brief Title
    request.setAttribute("name", name);
    request.setAttribute("prinInvestigator", principalInvestigator);
    request.setAttribute("description", briefSummary);
    request.setAttribute("sponsor", sponsor);
    request.setAttribute("startDate", startDate);
    request.setAttribute("expectedTotalEnrollment", expectedTotalEnrollment);
    request.setAttribute("status", status);
    String format = "yyyy-MM-dd";
    SimpleDateFormat formatter = null;
    Date formattedDate = null;
    if (startDate != "" && startDate != null) {
        try {
            formatter = new SimpleDateFormat(format);
            formattedDate = formatter.parse(startDate);
        } catch (ParseException e) {
            ErrorObject errorOBject = createErrorObject("Study Object", "The StartDate format is not a valid 'yyyy-MM-dd' format", "StartDate");
            errorObjects.add(errorOBject);
        }
        if (formattedDate != null) {
            if (!startDate.equals(formatter.format(formattedDate))) {
                ErrorObject errorOBject = createErrorObject("Study Object", "The StartDate format is not a valid 'yyyy-MM-dd' format", "StartDate");
                errorObjects.add(errorOBject);
            }
        }
    }
    UserAccountBean ownerUserAccount = getStudyOwnerAccount(request);
    if (ownerUserAccount == null) {
        ErrorObject errorOBject = createErrorObject("Study Object", "The Owner User Account is not Valid Account or Does not have Admin user type", "Owner Account");
        errorObjects.add(errorOBject);
    }
    Validator v0 = new Validator(request);
    v0.addValidation("name", Validator.NO_BLANKS);
    HashMap vError0 = v0.validate();
    if (!vError0.isEmpty()) {
        ErrorObject errorOBject = createErrorObject("Study Object", "This field cannot be blank.", "BriefTitle");
        errorObjects.add(errorOBject);
    }
    Validator v1 = new Validator(request);
    v1.addValidation("uniqueProId", Validator.NO_BLANKS);
    HashMap vError1 = v1.validate();
    if (!vError1.isEmpty()) {
        ErrorObject errorOBject = createErrorObject("Study Object", "This field cannot be blank.", "UniqueProtocolId");
        errorObjects.add(errorOBject);
    }
    Validator v2 = new Validator(request);
    v2.addValidation("description", Validator.NO_BLANKS);
    HashMap vError2 = v2.validate();
    if (!vError2.isEmpty()) {
        ErrorObject errorOBject = createErrorObject("Study Object", "This field cannot be blank.", "BriefSummary");
        errorObjects.add(errorOBject);
    }
    Validator v3 = new Validator(request);
    v3.addValidation("prinInvestigator", Validator.NO_BLANKS);
    HashMap vError3 = v3.validate();
    if (!vError3.isEmpty()) {
        ErrorObject errorOBject = createErrorObject("Study Object", "This field cannot be blank.", "PrincipleInvestigator");
        errorObjects.add(errorOBject);
    }
    Validator v4 = new Validator(request);
    v4.addValidation("sponsor", Validator.NO_BLANKS);
    HashMap vError4 = v4.validate();
    if (!vError4.isEmpty()) {
        ErrorObject errorOBject = createErrorObject("Study Object", "This field cannot be blank.", "Sponsor");
        errorObjects.add(errorOBject);
    }
    Validator v5 = new Validator(request);
    v5.addValidation("startDate", Validator.NO_BLANKS);
    HashMap vError5 = v5.validate();
    if (!vError5.isEmpty()) {
        ErrorObject errorOBject = createErrorObject("Study Object", "This field cannot be blank.", "StartDate");
        errorObjects.add(errorOBject);
    }
    Validator v6 = new Validator(request);
    HashMap vError6 = v6.validate();
    if (uniqueProtocolID != null)
        validateUniqueProId(request, vError6);
    if (!vError6.isEmpty()) {
        ErrorObject errorOBject = createErrorObject("Study Object", "Unique Protocol Id exist in the System", "UniqueProtocolId");
        errorObjects.add(errorOBject);
    }
    Validator v7 = new Validator(request);
    v7.addValidation("expectedTotalEnrollment", Validator.NO_BLANKS);
    HashMap vError7 = v7.validate();
    if (!vError7.isEmpty()) {
        ErrorObject errorOBject = createErrorObject("Study Object", "This field cannot be blank.", "ExpectedTotalEnrollment");
        errorObjects.add(errorOBject);
    }
    if (protocolType != null && !verifyProtocolTypeExist(protocolType)) {
        ErrorObject errorOBject = createErrorObject("Study Object", "Protocol Type is not Valid", "ProtocolType");
        errorObjects.add(errorOBject);
    }
    studyDTO.setErrors(errorObjects);
    if (errorObjects != null && errorObjects.size() != 0) {
        studyDTO.setMessage(validation_failed_message);
        response = new ResponseEntity(studyDTO, org.springframework.http.HttpStatus.BAD_REQUEST);
    } else {
        studyBean = buildStudyBean(uniqueProtocolID, name, briefSummary, principalInvestigator, sponsor, Integer.valueOf(expectedTotalEnrollment), protocolType, status, formattedDate, ownerUserAccount);
        StudyBean sBean = createStudy(studyBean, ownerUserAccount);
        studyDTO.setStudyOid(sBean.getOid());
        studyDTO.setMessage(validation_passed_message);
        StudyUserRoleBean sub = new StudyUserRoleBean();
        sub.setRole(Role.COORDINATOR);
        sub.setStudyId(sBean.getId());
        sub.setStatus(Status.AVAILABLE);
        sub.setOwner(ownerUserAccount);
        StudyUserRoleBean surb = createRole(ownerUserAccount, sub);
        ResourceBundle resterm = org.akaza.openclinica.i18n.util.ResourceBundleProvider.getTermsBundle();
        for (UserRole userRole : userList) {
            sub = new StudyUserRoleBean();
            sub.setRole(getStudyRole(userRole.getRole(), resterm));
            sub.setStudyId(sBean.getId());
            sub.setStatus(Status.AVAILABLE);
            sub.setOwner(ownerUserAccount);
            udao = new UserAccountDAO(dataSource);
            UserAccountBean assignedUserBean = (UserAccountBean) udao.findByUserName(userRole.getUsername());
            surb = createRole(assignedUserBean, sub);
        }
        ResponseSuccessStudyDTO responseSuccess = new ResponseSuccessStudyDTO();
        responseSuccess.setMessage(studyDTO.getMessage());
        responseSuccess.setStudyOid(studyDTO.getStudyOid());
        responseSuccess.setUniqueProtocolID(studyDTO.getUniqueProtocolID());
        response = new ResponseEntity(responseSuccess, org.springframework.http.HttpStatus.OK);
    }
    return response;
}
Also used : ResponseSuccessStudyDTO(org.akaza.openclinica.bean.login.ResponseSuccessStudyDTO) StudyDTO(org.akaza.openclinica.bean.login.StudyDTO) HashMap(java.util.HashMap) ResponseSuccessStudyDTO(org.akaza.openclinica.bean.login.ResponseSuccessStudyDTO) ErrorObject(org.akaza.openclinica.bean.login.ErrorObject) StudyBean(org.akaza.openclinica.bean.managestudy.StudyBean) StudyUserRoleBean(org.akaza.openclinica.bean.login.StudyUserRoleBean) ArrayList(java.util.ArrayList) UserAccountDAO(org.akaza.openclinica.dao.login.UserAccountDAO) Date(java.util.Date) ResponseEntity(org.springframework.http.ResponseEntity) UserRole(org.akaza.openclinica.bean.login.UserRole) UserAccountBean(org.akaza.openclinica.bean.login.UserAccountBean) ErrorObject(org.akaza.openclinica.bean.login.ErrorObject) ResourceBundle(java.util.ResourceBundle) ParseException(java.text.ParseException) SimpleDateFormat(java.text.SimpleDateFormat) Validator(org.akaza.openclinica.control.form.Validator)

Aggregations

StudyBean (org.akaza.openclinica.bean.managestudy.StudyBean)366 ArrayList (java.util.ArrayList)185 StudyDAO (org.akaza.openclinica.dao.managestudy.StudyDAO)184 FormProcessor (org.akaza.openclinica.control.form.FormProcessor)92 HashMap (java.util.HashMap)85 StudySubjectBean (org.akaza.openclinica.bean.managestudy.StudySubjectBean)68 StudyEventDefinitionBean (org.akaza.openclinica.bean.managestudy.StudyEventDefinitionBean)65 StudyEventDefinitionDAO (org.akaza.openclinica.dao.managestudy.StudyEventDefinitionDAO)62 Date (java.util.Date)61 UserAccountBean (org.akaza.openclinica.bean.login.UserAccountBean)59 StudyEventBean (org.akaza.openclinica.bean.managestudy.StudyEventBean)58 StudyEventDAO (org.akaza.openclinica.dao.managestudy.StudyEventDAO)57 StudySubjectDAO (org.akaza.openclinica.dao.managestudy.StudySubjectDAO)56 EventCRFBean (org.akaza.openclinica.bean.submit.EventCRFBean)52 EventCRFDAO (org.akaza.openclinica.dao.submit.EventCRFDAO)52 EventDefinitionCRFDAO (org.akaza.openclinica.dao.managestudy.EventDefinitionCRFDAO)45 UserAccountDAO (org.akaza.openclinica.dao.login.UserAccountDAO)42 Locale (java.util.Locale)41 CRFVersionDAO (org.akaza.openclinica.dao.submit.CRFVersionDAO)41 CRFVersionBean (org.akaza.openclinica.bean.submit.CRFVersionBean)38