Examples with CRFVersionBean org.akaza.openclinica.bean.submit.CRFVersionBean used on opensource projects

Example 46 with CRFVersionBean

use of org.akaza.openclinica.bean.submit.CRFVersionBean in project OpenClinica by OpenClinica.

the class OpenRosaServices method getSchedule.

@GET
@Path("/{studyOID}/getSchedule")
@Produces(MediaType.APPLICATION_XML)
public String getSchedule(@Context HttpServletRequest request, @Context HttpServletResponse response, @Context ServletContext context, @PathParam("studyOID") String studyOID, @RequestHeader("Authorization") String authorization) throws Exception {
    String ssoid = request.getParameter("studySubjectOID");
    StudySubjectDAO ssdao = new StudySubjectDAO<String, ArrayList>(dataSource);
    StudySubjectBean ssBean = ssdao.findByOid(ssoid);
    if (!mayProceedSubmission(studyOID, ssBean))
        return null;
    HashMap<String, String> urlCache = (HashMap<String, String>) context.getAttribute("pformURLCache");
    context.getAttribute("subjectContextCache");
    if (ssoid == null) {
        return "<error>studySubjectOID is null :(</error>";
    }
    try {
        // Need to retrieve crf's for next event
        StudyEventDAO eventDAO = new StudyEventDAO(getDataSource());
        StudyEventBean nextEvent = (StudyEventBean) eventDAO.getNextScheduledEvent(ssoid);
        CRFVersionDAO versionDAO = new CRFVersionDAO(getDataSource());
        ArrayList<CRFVersionBean> crfs = versionDAO.findDefCRFVersionsByStudyEvent(nextEvent.getStudyEventDefinitionId());
        PFormCache cache = PFormCache.getInstance(context);
        for (CRFVersionBean crfVersion : crfs) {
            String enketoURL = cache.getPFormURL(studyOID, crfVersion.getOid());
            String contextHash = cache.putSubjectContext(ssoid, String.valueOf(nextEvent.getStudyEventDefinitionId()), String.valueOf(nextEvent.getSampleOrdinal()), crfVersion.getOid(), studyOID);
        }
    } catch (Exception e) {
        LOGGER.debug(e.getMessage());
        LOGGER.debug(ExceptionUtils.getStackTrace(e));
        return "<error>" + e.getMessage() + "</error>";
    }
    response.setHeader("Content-Type", "text/xml; charset=UTF-8");
    response.setHeader("Content-Disposition", "attachment; filename=\"schedule.xml\";");
    response.setContentType("text/xml; charset=utf-8");
    return "<result>success</result>";
}

Example 47 with CRFVersionBean

use of org.akaza.openclinica.bean.submit.CRFVersionBean in project OpenClinica by OpenClinica.

the class OpenRosaXmlGenerator method buildForm.

/**
     * @param formId
     * @return
     * @throws Exception
     */
public String buildForm(String formId) throws Exception {
    try {
        CRFVersionDAO versionDAO = new CRFVersionDAO(dataSource);
        FormLayoutDAO fldao = new FormLayoutDAO<>(dataSource);
        FormLayoutBean formLayout = fldao.findByOid(formId);
        CRFDAO crfDAO = new CRFDAO(dataSource);
        CRFBean crf = (CRFBean) crfDAO.findByPK(formLayout.getCrfId());
        CRFVersionMetadataUtil metadataUtil = new CRFVersionMetadataUtil(dataSource);
        ArrayList<SectionBean> crfSections = metadataUtil.retrieveFormMetadata(formLayout);
        ArrayList<CRFVersionBean> crfVersions = versionDAO.findAllByCRFId(crf.getId());
        CRFVersionBean crfVersion = crfVersions.get(0);
        StringWriter writer = new StringWriter();
        IOUtils.copy(getClass().getResourceAsStream("/properties/xform_template.xml"), writer, "UTF-8");
        String xform = writer.toString();
        Html html = buildJavaXForm(xform);
        int sectionCount = mapBeansToDTO(html, crf, crfVersion, crfSections);
        if (sectionCount > 1)
            setFormPaging(html);
        String xformMinusInstance = buildStringXForm(html);
        String preInstance = xformMinusInstance.substring(0, xformMinusInstance.indexOf("<instance>"));
        String instance = buildInstance(html.getHead().getModel(), formLayout, crfVersion, crfSections);
        String nodeset = xformMinusInstance.substring(xformMinusInstance.indexOf("</instance>") + "</instance>".length());
        // add nodeset for instanceId
        String postInstance = "<bind calculate=\"concat('uuid:', uuid())\" nodeset=\"/" + formLayout.getOid() + "/meta/instanceID\" readonly=\"true()\" type=\"string\"/>" + nodeset;
        logger.debug(preInstance + "<instance>\n" + instance + "\n</instance>" + postInstance);
        System.out.println(preInstance + "<instance>\n" + instance + "\n</instance>" + postInstance);
        return preInstance + "<instance>\n" + instance + "\n</instance>" + postInstance;
    } catch (Exception e) {
        log.error(e.getMessage());
        log.error(ExceptionUtils.getStackTrace(e));
        throw new Exception(e);
    }
}

Example 48 with CRFVersionBean

use of org.akaza.openclinica.bean.submit.CRFVersionBean in project OpenClinica by OpenClinica.

the class SDVUtil method getCRFVersionName.

public String getCRFVersionName(int crfVersionId) {
    CRFVersionDAO cRFVersionDAO = new CRFVersionDAO(dataSource);
    CRFVersionBean versionBean = (CRFVersionBean) cRFVersionDAO.findByPK(crfVersionId);
    if (versionBean != null) {
        return versionBean.getName();
    }
    return "";
}

Example 49 with CRFVersionBean

use of org.akaza.openclinica.bean.submit.CRFVersionBean in project OpenClinica by OpenClinica.

the class SDVUtil method getCRFName.

public String getCRFName(int crfVersionId) {
    CRFVersionDAO cRFVersionDAO = new CRFVersionDAO(dataSource);
    CRFDAO cRFDAO = new CRFDAO(dataSource);
    CRFVersionBean versionBean = (CRFVersionBean) cRFVersionDAO.findByPK(crfVersionId);
    if (versionBean != null) {
        CRFBean crfBean = (CRFBean) cRFDAO.findByPK(versionBean.getCrfId());
        if (crfBean != null)
            return crfBean.getName();
    }
    return "";
}

Example 50 with CRFVersionBean

use of org.akaza.openclinica.bean.submit.CRFVersionBean in project OpenClinica by OpenClinica.

the class ImportCRFDataService method eventCRFStatusesValid.

/*
     * purpose: returns false if any of the forms/EventCRFs fail the UpsertOnBean rules.
     */
public boolean eventCRFStatusesValid(ODMContainer odmContainer, UserAccountBean ub) {
    ArrayList<EventCRFBean> eventCRFBeans = new ArrayList<EventCRFBean>();
    ArrayList<Integer> eventCRFBeanIds = new ArrayList<Integer>();
    EventCRFDAO eventCrfDAO = new EventCRFDAO(ds);
    StudySubjectDAO studySubjectDAO = new StudySubjectDAO(ds);
    StudyEventDefinitionDAO studyEventDefinitionDAO = new StudyEventDefinitionDAO(ds);
    StudyDAO studyDAO = new StudyDAO(ds);
    StudyEventDAO studyEventDAO = new StudyEventDAO(ds);
    UpsertOnBean upsert = odmContainer.getCrfDataPostImportContainer().getUpsertOn();
    // If Upsert bean is not present, create one with default settings
    if (upsert == null)
        upsert = new UpsertOnBean();
    String studyOID = odmContainer.getCrfDataPostImportContainer().getStudyOID();
    StudyBean studyBean = studyDAO.findByOid(studyOID);
    ArrayList<SubjectDataBean> subjectDataBeans = odmContainer.getCrfDataPostImportContainer().getSubjectData();
    for (SubjectDataBean subjectDataBean : subjectDataBeans) {
        ArrayList<StudyEventDataBean> studyEventDataBeans = subjectDataBean.getStudyEventData();
        StudySubjectBean studySubjectBean = studySubjectDAO.findByOidAndStudy(subjectDataBean.getSubjectOID(), studyBean.getId());
        for (StudyEventDataBean studyEventDataBean : studyEventDataBeans) {
            ArrayList<FormDataBean> formDataBeans = studyEventDataBean.getFormData();
            String sampleOrdinal = studyEventDataBean.getStudyEventRepeatKey() == null ? "1" : studyEventDataBean.getStudyEventRepeatKey();
            StudyEventDefinitionBean studyEventDefinitionBean = studyEventDefinitionDAO.findByOidAndStudy(studyEventDataBean.getStudyEventOID(), studyBean.getId(), studyBean.getParentStudyId());
            logger.info("find all by def and subject " + studyEventDefinitionBean.getName() + " study subject " + studySubjectBean.getName());
            StudyEventBean studyEventBean = (StudyEventBean) studyEventDAO.findByStudySubjectIdAndDefinitionIdAndOrdinal(studySubjectBean.getId(), studyEventDefinitionBean.getId(), Integer.parseInt(sampleOrdinal));
            // locked
            if (studyEventBean.getSubjectEventStatus().equals(SubjectEventStatus.LOCKED) || studyEventBean.getSubjectEventStatus().equals(SubjectEventStatus.SIGNED) || studyEventBean.getSubjectEventStatus().equals(SubjectEventStatus.STOPPED)) {
                return true;
            }
            for (FormDataBean formDataBean : formDataBeans) {
                CRFVersionDAO crfVersionDAO = new CRFVersionDAO(ds);
                ArrayList<CRFVersionBean> crfVersionBeans = crfVersionDAO.findAllByOid(formDataBean.getFormOID());
                for (CRFVersionBean crfVersionBean : crfVersionBeans) {
                    ArrayList<EventCRFBean> eventCrfBeans = eventCrfDAO.findByEventSubjectVersion(studyEventBean, studySubjectBean, crfVersionBean);
                    // event crf, yet.
                    if (eventCrfBeans.isEmpty()) {
                        logger.debug("   found no event crfs from Study Event id " + studyEventBean.getId() + ", location " + studyEventBean.getLocation());
                        if ((studyEventBean.getSubjectEventStatus().equals(SubjectEventStatus.SCHEDULED) || studyEventBean.getSubjectEventStatus().equals(SubjectEventStatus.DATA_ENTRY_STARTED) || studyEventBean.getSubjectEventStatus().equals(SubjectEventStatus.COMPLETED))) {
                            if (!upsert.isNotStarted())
                                return false;
                        }
                    }
                    for (EventCRFBean ecb : eventCrfBeans) {
                        Integer ecbId = new Integer(ecb.getId());
                        if (!(ecb.getStage().equals(DataEntryStage.INITIAL_DATA_ENTRY) && upsert.isDataEntryStarted()) && !(ecb.getStage().equals(DataEntryStage.DOUBLE_DATA_ENTRY_COMPLETE) && upsert.isDataEntryComplete()))
                            return false;
                    }
                }
            }
        }
    }
    return true;
}