Examples with CRFVersionBean org.akaza.openclinica.bean.submit.CRFVersionBean used on opensource projects

Example 66 with CRFVersionBean

use of org.akaza.openclinica.bean.submit.CRFVersionBean in project OpenClinica by OpenClinica.

the class RemoveCRFServlet method processRequest.

@Override
public void processRequest() throws Exception {
    CRFDAO cdao = new CRFDAO(sm.getDataSource());
    CRFVersionDAO cvdao = new CRFVersionDAO(sm.getDataSource());
    FormProcessor fp = new FormProcessor(request);
    // checks which module the requests are from
    String module = fp.getString(MODULE);
    request.setAttribute(MODULE, module);
    int crfId = fp.getInt("id", true);
    String action = request.getParameter("action");
    if (crfId == 0) {
        addPageMessage(respage.getString("please_choose_a_CRF_to_remove"));
        forwardPage(Page.CRF_LIST_SERVLET);
    } else {
        CRFBean crf = (CRFBean) cdao.findByPK(crfId);
        ArrayList versions = cvdao.findAllByCRFId(crfId);
        crf.setVersions(versions);
        EventDefinitionCRFDAO edcdao = new EventDefinitionCRFDAO(sm.getDataSource());
        ArrayList edcs = (ArrayList) edcdao.findAllByCRF(crfId);
        SectionDAO secdao = new SectionDAO(sm.getDataSource());
        EventCRFDAO evdao = new EventCRFDAO(sm.getDataSource());
        ArrayList eventCRFs = evdao.findAllByCRF(crfId);
        StudyEventDAO seDao = new StudyEventDAO(sm.getDataSource());
        StudyEventDefinitionDAO sedDao = new StudyEventDefinitionDAO(sm.getDataSource());
        for (Object ecBean : eventCRFs) {
            StudyEventBean seBean = (StudyEventBean) seDao.findByPK(((EventCRFBean) ecBean).getStudyEventId());
            StudyEventDefinitionBean sedBean = (StudyEventDefinitionBean) sedDao.findByPK(seBean.getStudyEventDefinitionId());
            ((EventCRFBean) ecBean).setEventName(sedBean.getName());
        }
        if ("confirm".equalsIgnoreCase(action)) {
            request.setAttribute("crfToRemove", crf);
            request.setAttribute("eventCRFs", eventCRFs);
            forwardPage(Page.REMOVE_CRF);
        } else {
            logger.info("submit to remove the crf");
            crf.setStatus(Status.DELETED);
            crf.setUpdater(ub);
            crf.setUpdatedDate(new Date());
            cdao.update(crf);
            for (int i = 0; i < versions.size(); i++) {
                CRFVersionBean version = (CRFVersionBean) versions.get(i);
                if (!version.getStatus().equals(Status.DELETED)) {
                    version.setStatus(Status.AUTO_DELETED);
                    version.setUpdater(ub);
                    version.setUpdatedDate(new Date());
                    cvdao.update(version);
                    ArrayList sections = secdao.findAllByCRFVersionId(version.getId());
                    for (int j = 0; j < sections.size(); j++) {
                        SectionBean section = (SectionBean) sections.get(j);
                        if (!section.getStatus().equals(Status.DELETED)) {
                            section.setStatus(Status.AUTO_DELETED);
                            section.setUpdater(ub);
                            section.setUpdatedDate(new Date());
                            secdao.update(section);
                        }
                    }
                }
            }
            for (int i = 0; i < edcs.size(); i++) {
                EventDefinitionCRFBean edc = (EventDefinitionCRFBean) edcs.get(i);
                if (!edc.getStatus().equals(Status.DELETED)) {
                    edc.setStatus(Status.AUTO_DELETED);
                    edc.setUpdater(ub);
                    edc.setUpdatedDate(new Date());
                    edcdao.update(edc);
                }
            }
            ItemDataDAO idao = new ItemDataDAO(sm.getDataSource());
            for (int i = 0; i < eventCRFs.size(); i++) {
                EventCRFBean eventCRF = (EventCRFBean) eventCRFs.get(i);
                if (!eventCRF.getStatus().equals(Status.DELETED)) {
                    eventCRF.setStatus(Status.AUTO_DELETED);
                    eventCRF.setUpdater(ub);
                    eventCRF.setUpdatedDate(new Date());
                    evdao.update(eventCRF);
                    ArrayList items = idao.findAllByEventCRFId(eventCRF.getId());
                    for (int j = 0; j < items.size(); j++) {
                        ItemDataBean item = (ItemDataBean) items.get(j);
                        if (!item.getStatus().equals(Status.DELETED)) {
                            item.setStatus(Status.AUTO_DELETED);
                            item.setUpdater(ub);
                            item.setUpdatedDate(new Date());
                            idao.update(item);
                        }
                    }
                }
            }
            addPageMessage(respage.getString("the_CRF") + crf.getName() + " " + respage.getString("has_been_removed_succesfully"));
            forwardPage(Page.CRF_LIST_SERVLET);
        }
    }
}

Example 67 with CRFVersionBean

use of org.akaza.openclinica.bean.submit.CRFVersionBean in project OpenClinica by OpenClinica.

the class RemoveCRFVersionServlet method processRequest.

@Override
public void processRequest() throws Exception {
    CRFVersionDAO cvdao = new CRFVersionDAO(sm.getDataSource());
    FormProcessor fp = new FormProcessor(request);
    int versionId = fp.getInt("id", true);
    String module = fp.getString("module");
    request.setAttribute("module", module);
    String action = fp.getString("action");
    if (versionId == 0) {
        addPageMessage(respage.getString("please_choose_a_CRF_version_to_remove"));
        forwardPage(Page.CRF_LIST_SERVLET);
    } else {
        if (StringUtil.isBlank(action)) {
            addPageMessage(respage.getString("no_action_specified"));
            forwardPage(Page.CRF_LIST_SERVLET);
            return;
        }
        CRFVersionBean version = (CRFVersionBean) cvdao.findByPK(versionId);
        if (!ub.isSysAdmin() && (version.getOwnerId() != ub.getId())) {
            addPageMessage(respage.getString("no_have_correct_privilege_current_study") + " " + respage.getString("change_active_study_or_contact"));
            forwardPage(Page.MENU_SERVLET);
            return;
        }
        SectionDAO secdao = new SectionDAO(sm.getDataSource());
        EventCRFDAO evdao = new EventCRFDAO(sm.getDataSource());
        // find all event crfs by version id
        ArrayList eventCRFs = evdao.findUndeletedWithStudySubjectsByCRFVersion(versionId);
        if ("confirm".equalsIgnoreCase(action)) {
            request.setAttribute("versionToRemove", version);
            request.setAttribute("eventCRFs", eventCRFs);
            forwardPage(Page.REMOVE_CRF_VERSION);
        } else {
            logger.info("submit to remove the crf version");
            // version
            version.setStatus(Status.DELETED);
            version.setUpdater(ub);
            version.setUpdatedDate(new Date());
            cvdao.update(version);
            // crfs in the second pass
            for (int ii = 0; ii < eventCRFs.size(); ii++) {
                EventCRFBean ecbean = (EventCRFBean) eventCRFs.get(ii);
                ecbean.setStatus(Status.AUTO_DELETED);
                ecbean.setUpdater(ub);
                ecbean.setUpdatedDate(new Date());
                evdao.update(ecbean);
            }
            // added above tbh 092007, to fix task
            // all sections
            ArrayList sections = secdao.findAllByCRFVersionId(version.getId());
            for (int j = 0; j < sections.size(); j++) {
                SectionBean section = (SectionBean) sections.get(j);
                if (!section.getStatus().equals(Status.DELETED)) {
                    section.setStatus(Status.AUTO_DELETED);
                    section.setUpdater(ub);
                    section.setUpdatedDate(new Date());
                    secdao.update(section);
                }
            }
            // all item data related to event crfs
            ItemDataDAO idao = new ItemDataDAO(sm.getDataSource());
            for (int i = 0; i < eventCRFs.size(); i++) {
                EventCRFBean eventCRF = (EventCRFBean) eventCRFs.get(i);
                if (!eventCRF.getStatus().equals(Status.DELETED)) {
                    eventCRF.setStatus(Status.AUTO_DELETED);
                    eventCRF.setUpdater(ub);
                    eventCRF.setUpdatedDate(new Date());
                    evdao.update(eventCRF);
                    ArrayList items = idao.findAllByEventCRFId(eventCRF.getId());
                    for (int j = 0; j < items.size(); j++) {
                        ItemDataBean item = (ItemDataBean) items.get(j);
                        if (!item.getStatus().equals(Status.DELETED)) {
                            item.setStatus(Status.AUTO_DELETED);
                            item.setUpdater(ub);
                            item.setUpdatedDate(new Date());
                            idao.update(item);
                        }
                    }
                }
            }
            ArrayList versionList = (ArrayList) cvdao.findAllByCRF(version.getCrfId());
            if (versionList.size() > 0) {
                EventDefinitionCRFDAO edCRFDao = new EventDefinitionCRFDAO(sm.getDataSource());
                ArrayList edcList = (ArrayList) edCRFDao.findAllByCRF(version.getCrfId());
                for (int i = 0; i < edcList.size(); i++) {
                    EventDefinitionCRFBean edcBean = (EventDefinitionCRFBean) edcList.get(i);
                    updateEventDef(edcBean, edCRFDao, versionList);
                }
            }
            addPageMessage(respage.getString("the_CRF") + version.getName() + " " + respage.getString("has_been_removed_succesfully"));
            forwardPage(Page.CRF_LIST_SERVLET);
        }
    }
}

Example 68 with CRFVersionBean

use of org.akaza.openclinica.bean.submit.CRFVersionBean in project OpenClinica by OpenClinica.

the class ViewSectionDataEntryServlet method processRequest.

// BWP 01/08>>
@Override
public void processRequest(HttpServletRequest request, HttpServletResponse response) throws Exception {
    FormProcessor fp = new FormProcessor(request);
    StudyBean currentStudy = (StudyBean) request.getSession().getAttribute("study");
    EventCRFBean ecb = (EventCRFBean) request.getAttribute(INPUT_EVENT_CRF);
    SectionBean sb = (SectionBean) request.getAttribute(SECTION_BEAN);
    boolean isSubmitted = false;
    EventDefinitionCRFBean edcb = (EventDefinitionCRFBean) request.getAttribute(EVENT_DEF_CRF_BEAN);
    if (!fp.getString("exitTo").equals("")) {
        request.setAttribute("exitTo", fp.getString("exitTo"));
    }
    int crfVersionId = fp.getInt("crfVersionId", true);
    int sectionId = fp.getInt("sectionId");
    int eventCRFId = fp.getInt(EVENT_CRF_ID, true);
    int studySubjectId = fp.getInt("studySubjectId", true);
    String action = fp.getString("action");
    HttpSession session = request.getSession();
    String fromResolvingNotes = fp.getString("fromResolvingNotes", true);
    if (StringUtil.isBlank(fromResolvingNotes)) {
        session.removeAttribute(ViewNotesServlet.WIN_LOCATION);
        session.removeAttribute(ViewNotesServlet.NOTES_TABLE);
    }
    // Added for
    request.setAttribute("studySubjectId", studySubjectId + "");
    // Mantis
    // Issue
    // 2268
    // Added
    request.setAttribute("crfListPage", fp.getString("crfListPage"));
    // for
    // Mantis
    // Issue
    // 2268
    // Added for
    request.setAttribute("eventId", fp.getString("eventId"));
    // Mantis
    // Issue
    // 2268
    // YW <<
    int sedId = fp.getInt("sedId");
    request.setAttribute("sedId", sedId + "");
    int crfId = fp.getInt("crfId");
    // BWP>> ... try to get crfId from crfVersionId
    if (crfId == 0 && crfVersionId > 0) {
        CRFVersionDAO crfVDao = new CRFVersionDAO(getDataSource());
        CRFVersionBean crvVBean = (CRFVersionBean) crfVDao.findByPK(crfVersionId);
        if (crvVBean != null) {
            crfId = crvVBean.getCrfId();
        }
    }
    // YW >>
    int eventDefinitionCRFId = fp.getInt("eventDefinitionCRFId");
    EventDefinitionCRFDAO eventCrfDao = new EventDefinitionCRFDAO(getDataSource());
    edcb = (EventDefinitionCRFBean) eventCrfDao.findByPK(eventDefinitionCRFId);
    if (eventCRFId == 0 && edcb.getStudyId() != currentStudy.getParentStudyId() && edcb.getStudyId() != currentStudy.getId()) {
        addPageMessage(respage.getString("no_have_correct_privilege_current_study") + " " + respage.getString("change_study_contact_sysadmin"), request);
        throw new InsufficientPermissionException(Page.MENU_SERVLET, resexception.getString("not_director"), "1");
    }
    if (crfId == 0 && eventDefinitionCRFId > 0) {
        // eventCrfDao.findByPK(eventDefinitionCRFId);
        if (edcb != null) {
            crfId = edcb.getCrfId();
        }
    }
    request.setAttribute("crfId", crfId + "");
    request.setAttribute("eventDefinitionCRFId", eventDefinitionCRFId + "");
    String printVersion = fp.getString("print");
    // BWP>> this has to be removed for CRFs that do not display an
    // interviewdate
    // for a particular event
    session.removeAttribute("presetValues");
    EventCRFDAO ecdao = new EventCRFDAO(getDataSource());
    SectionDAO sdao = new SectionDAO(getDataSource());
    String age = "";
    if (sectionId == 0 && crfVersionId == 0 && eventCRFId == 0) {
        addPageMessage(respage.getString("please_choose_a_CRF_to_view"), request);
        // forwardPage(Page.SUBMIT_DATA_SERVLET);
        forwardPage(Page.LIST_STUDY_SUBJECTS_SERVLET, request, response);
        // >> changed tbh, 06/2009
        return;
    }
    if (studySubjectId > 0) {
        StudySubjectDAO ssdao = new StudySubjectDAO(getDataSource());
        StudySubjectBean sub = (StudySubjectBean) ssdao.findByPK(studySubjectId);
        request.setAttribute("studySubject", sub);
    }
    if (eventCRFId > 0) {
        // for event crf, the input crfVersionId from url =0
        ecb = (EventCRFBean) ecdao.findByPK(eventCRFId);
        StudyEventDAO sedao = new StudyEventDAO(getDataSource());
        StudyEventBean event = (StudyEventBean) sedao.findByPK(ecb.getStudyEventId());
        // event.getSubjectEventStatus().getName());
        if (event.getSubjectEventStatus().equals(SubjectEventStatus.LOCKED)) {
            request.setAttribute("isLocked", "yes");
        // System.out.println("this event crf is locked");
        } else {
            request.setAttribute("isLocked", "no");
        }
        if (studySubjectId <= 0) {
            studySubjectId = event.getStudySubjectId();
            request.setAttribute("studySubjectId", studySubjectId + "");
        }
        // Get the status/number of item discrepancy notes
        DiscrepancyNoteDAO dndao = new DiscrepancyNoteDAO(getDataSource());
        ArrayList<DiscrepancyNoteBean> allNotes = new ArrayList<DiscrepancyNoteBean>();
        List<DiscrepancyNoteBean> eventCrfNotes = new ArrayList<DiscrepancyNoteBean>();
        List<DiscrepancyNoteThread> noteThreads = new ArrayList<DiscrepancyNoteThread>();
        // if (eventCRFId > 0) {
        // this method finds only parent notes
        allNotes = dndao.findAllTopNotesByEventCRF(eventCRFId);
        // add interviewer.jsp related notes to this Collection
        eventCrfNotes = dndao.findOnlyParentEventCRFDNotesFromEventCRF(ecb);
        if (!eventCrfNotes.isEmpty()) {
            allNotes.addAll(eventCrfNotes);
            // make sure a necessary request attribute "hasNameNote" is set
            // properly
            this.setAttributeForInterviewerDNotes(eventCrfNotes, request);
        }
        // }
        // Create disc note threads out of the various notes
        DiscrepancyNoteUtil dNoteUtil = new DiscrepancyNoteUtil();
        noteThreads = dNoteUtil.createThreadsOfParents(allNotes, getDataSource(), currentStudy, null, -1, true);
        // variables that provide values for the CRF discrepancy note header
        int updatedNum = 0;
        int openNum = 0;
        int closedNum = 0;
        int resolvedNum = 0;
        int notAppNum = 0;
        DiscrepancyNoteBean tempBean;
        for (DiscrepancyNoteThread dnThread : noteThreads) {
            /*
                 * 3014: do not count parent beans, only the last child disc
                 * note of the thread.
                 */
            tempBean = dnThread.getLinkedNoteList().getLast();
            if (tempBean != null) {
                if (ResolutionStatus.UPDATED.equals(tempBean.getResStatus())) {
                    updatedNum++;
                } else if (ResolutionStatus.OPEN.equals(tempBean.getResStatus())) {
                    openNum++;
                } else if (ResolutionStatus.CLOSED.equals(tempBean.getResStatus())) {
                    // if (dn.getParentDnId() > 0){
                    closedNum++;
                // }
                } else if (ResolutionStatus.RESOLVED.equals(tempBean.getResStatus())) {
                    // if (dn.getParentDnId() > 0){
                    resolvedNum++;
                // }
                } else if (ResolutionStatus.NOT_APPLICABLE.equals(tempBean.getResStatus())) {
                    notAppNum++;
                }
            }
        }
        request.setAttribute("updatedNum", updatedNum + "");
        request.setAttribute("openNum", openNum + "");
        request.setAttribute("closedNum", closedNum + "");
        request.setAttribute("resolvedNum", resolvedNum + "");
        request.setAttribute("notAppNum", notAppNum + "");
        DisplayTableOfContentsBean displayBean = TableOfContentsServlet.getDisplayBean(ecb, getDataSource(), currentStudy);
        // Make sure that the interviewDate in the eventCRF is properly
        // formatted
        // for viewSectionDataEntry.jsp --> interviewer.jsp
        // int studyEventId = (Integer)request.getAttribute("studyEvent");
        // SimpleDateFormat formatter = new SimpleDateFormat("MM/dd/yyyy");
        //
        Date tmpDate = displayBean.getEventCRF().getDateInterviewed();
        String formattedInterviewerDate;
        try {
            DateFormat local_df = new SimpleDateFormat(resformat.getString("date_format_string"), ResourceBundleProvider.getLocale());
            formattedInterviewerDate = local_df.format(tmpDate);
        } catch (Exception e) {
            formattedInterviewerDate = "";
        }
        HashMap presetVals = (HashMap) session.getAttribute("presetValues");
        if (presetVals == null) {
            presetVals = new HashMap();
            session.setAttribute("presetValues", presetVals);
        }
        presetVals.put("interviewDate", formattedInterviewerDate);
        request.setAttribute("toc", displayBean);
        ArrayList sections = displayBean.getSections();
        request.setAttribute("sectionNum", sections.size() + "");
        if (!sections.isEmpty()) {
            if (sectionId == 0) {
                SectionBean firstSec = (SectionBean) sections.get(0);
                sectionId = firstSec.getId();
            }
        } else {
            addPageMessage(respage.getString("there_are_no_sections_ins_this_CRF"), request);
            // forwardPage(Page.SUBMIT_DATA_SERVLET);
            forwardPage(Page.LIST_STUDY_SUBJECTS_SERVLET, request, response);
            // >> changed tbh, 06/2009
            return;
        }
    } else if (crfVersionId > 0) {
        // for viewing blank CRF
        DisplayTableOfContentsBean displayBean = ViewTableOfContentServlet.getDisplayBean(getDataSource(), crfVersionId);
        request.setAttribute("toc", displayBean);
        ArrayList sections = displayBean.getSections();
        request.setAttribute("sectionNum", sections.size() + "");
        if (!sections.isEmpty()) {
            if (sectionId == 0) {
                SectionBean firstSec = (SectionBean) sections.get(0);
                sectionId = firstSec.getId();
            }
        } else {
            addPageMessage(respage.getString("there_are_no_sections_ins_this_CRF_version"), request);
            if (eventCRFId == 0) {
                forwardPage(Page.CRF_LIST_SERVLET, request, response);
            } else {
                // forwardPage(Page.SUBMIT_DATA_SERVLET);
                forwardPage(Page.LIST_STUDY_SUBJECTS_SERVLET, request, response);
            // >> changed tbh, 06/2009
            }
            return;
        }
    }
    sb = (SectionBean) sdao.findByPK(sectionId);
    if (eventCRFId == 0) {
        ecb = new EventCRFBean();
        ecb.setCRFVersionId(sb.getCRFVersionId());
        if (currentStudy.getParentStudyId() > 0) {
            // this is a site,find parent
            StudyDAO studydao = new StudyDAO(getDataSource());
            StudyBean parentStudy = (StudyBean) studydao.findByPK(currentStudy.getParentStudyId());
            request.setAttribute("studyTitle", parentStudy.getName());
            request.setAttribute("siteTitle", currentStudy.getName());
        } else {
            request.setAttribute("studyTitle", currentStudy.getName());
        }
    } else {
        ecb = (EventCRFBean) ecdao.findByPK(eventCRFId);
        request.setAttribute(INPUT_EVENT_CRF, ecb);
        request.setAttribute(SECTION_BEAN, sb);
        // This is the StudySubjectBean
        StudySubjectDAO ssdao = new StudySubjectDAO(getDataSource());
        StudySubjectBean sub = (StudySubjectBean) ssdao.findByPK(ecb.getStudySubjectId());
        // This is the SubjectBean
        SubjectDAO subjectDao = new SubjectDAO(getDataSource());
        int subjectId = sub.getSubjectId();
        int studyId = sub.getStudyId();
        SubjectBean subject = (SubjectBean) subjectDao.findByPK(subjectId);
        // Let us process the age
        if (currentStudy.getStudyParameterConfig().getCollectDob().equals("1")) {
            StudyEventDAO sedao = new StudyEventDAO(getDataSource());
            StudyEventBean se = (StudyEventBean) sedao.findByPK(ecb.getStudyEventId());
            StudyEventDefinitionDAO seddao = new StudyEventDefinitionDAO(getDataSource());
            StudyEventDefinitionBean sed = (StudyEventDefinitionBean) seddao.findByPK(se.getStudyEventDefinitionId());
            se.setStudyEventDefinition(sed);
            request.setAttribute("studyEvent", se);
            // YW 11-16-2007 enrollment-date is used for computing age
            age = Utils.getInstacne().processAge(sub.getEnrollmentDate(), subject.getDateOfBirth());
        }
        // Get the study then the parent study
        StudyDAO studydao = new StudyDAO(getDataSource());
        StudyBean study = (StudyBean) studydao.findByPK(studyId);
        if (study.getParentStudyId() > 0) {
            // this is a site,find parent
            StudyBean parentStudy = (StudyBean) studydao.findByPK(study.getParentStudyId());
            request.setAttribute("studyTitle", parentStudy.getName());
            request.setAttribute("siteTitle", study.getName());
        } else {
            request.setAttribute("studyTitle", study.getName());
        }
        request.setAttribute("studySubject", sub);
        request.setAttribute("subject", subject);
        request.setAttribute("age", age);
    }
    // FormBeanUtil formUtil = new FormBeanUtil();
    // DisplaySectionBean newDisplayBean = new DisplaySectionBean();
    boolean hasItemGroup = false;
    // we will look into db to see if any repeating items for this CRF
    // section
    ItemGroupDAO igdao = new ItemGroupDAO(getDataSource());
    List<ItemGroupBean> itemGroups = igdao.findLegitGroupBySectionId(sectionId);
    if (!itemGroups.isEmpty()) {
        hasItemGroup = true;
    }
    // if the List of DisplayFormGroups is empty, then the servlet defers to
    // the prior method
    // of generating a DisplaySectionBean for the application
    DisplaySectionBean dsb;
    // want to get displayBean with grouped and ungrouped items
    request.setAttribute(EVENT_DEF_CRF_BEAN, edcb);
    request.setAttribute(INPUT_EVENT_CRF, ecb);
    request.setAttribute(SECTION_BEAN, sb);
    dsb = super.getDisplayBean(hasItemGroup, false, request, isSubmitted);
    StudySubjectDAO studySubjectDAO = new StudySubjectDAO(getDataSource());
    StudyEventDefinitionDAO studyEventDefinitionDAO = new StudyEventDefinitionDAO(getDataSource());
    StudyEventDAO studyEventDAO = new StudyEventDAO(getDataSource());
    StudyEventDefinitionBean studyEventDefinition = (StudyEventDefinitionBean) studyEventDefinitionDAO.findByPK(edcb.getStudyEventDefinitionId());
    StudyEventBean studyEvent = (StudyEventBean) studyEventDAO.findByPK(ecb.getStudyEventId());
    VariableSubstitutionHelper.replaceVariables(dsb, currentStudy, (StudySubjectBean) studySubjectDAO.findByPK(studySubjectId), studyEventDefinition, studyEvent, getDataSource());
    FormDiscrepancyNotes discNotes = (FormDiscrepancyNotes) session.getAttribute(AddNewSubjectServlet.FORM_DISCREPANCY_NOTES_NAME);
    if (discNotes == null) {
        discNotes = new FormDiscrepancyNotes();
        session.setAttribute(AddNewSubjectServlet.FORM_DISCREPANCY_NOTES_NAME, discNotes);
    }
    /*
         * if (hasItemGroup) { //
         * dsb.setDisplayItemGroups(newDisplayBean.getDisplayItemGroups());
         * request.setAttribute("new_table", true); }
         */
    // If the Horizontal type table will be used, then set the
    // DisplaySectionBean's
    // DisplayFormGroups List to the ones we have just generated
    // @pgawade 30-May-2012 Fix for issue 13963 - added an extra parameter
    // 'isSubmitted' to method createItemWithGroups
    List<DisplayItemWithGroupBean> displayItemWithGroups = super.createItemWithGroups(dsb, hasItemGroup, eventDefinitionCRFId, request, isSubmitted);
    dsb.setDisplayItemGroups(displayItemWithGroups);
    super.populateNotesWithDBNoteCounts(discNotes, dsb, request);
    if (fp.getString("fromViewNotes") != null && "1".equals(fp.getString("fromViewNotes"))) {
        request.setAttribute("fromViewNotes", fp.getString("fromViewNotes"));
    } else {
        session.removeAttribute("viewNotesURL");
    }
    if ("saveNotes".equalsIgnoreCase(action)) {
        LOGGER.info("33333how many group rows:" + dsb.getDisplayItemGroups().size());
        // let's save notes for the blank items
        DiscrepancyNoteDAO dndao = new DiscrepancyNoteDAO(getDataSource());
        discNotes = (FormDiscrepancyNotes) session.getAttribute(AddNewSubjectServlet.FORM_DISCREPANCY_NOTES_NAME);
        for (int i = 0; i < dsb.getDisplayItemGroups().size(); i++) {
            DisplayItemWithGroupBean diwb = dsb.getDisplayItemGroups().get(i);
            if (diwb.isInGroup()) {
                List<DisplayItemGroupBean> dgbs = diwb.getItemGroups();
                LOGGER.info("dgbs size: " + dgbs.size());
                for (int j = 0; j < dgbs.size(); j++) {
                    DisplayItemGroupBean displayGroup = dgbs.get(j);
                    List<DisplayItemBean> items = displayGroup.getItems();
                    LOGGER.info("item size: " + items.size());
                    for (DisplayItemBean displayItem : items) {
                        String inputName = getGroupItemInputName(displayGroup, j, displayItem);
                        LOGGER.info("inputName:" + inputName);
                        LOGGER.info("item data id:" + displayItem.getData().getId());
                        AddNewSubjectServlet.saveFieldNotes(inputName, discNotes, dndao, displayItem.getData().getId(), "itemData", currentStudy);
                    }
                }
            } else {
                DisplayItemBean dib = diwb.getSingleItem();
                // TODO work on this line
                String inputName = getInputName(dib);
                AddNewSubjectServlet.saveFieldNotes(inputName, discNotes, dndao, dib.getData().getId(), DiscrepancyNoteBean.ITEM_DATA, currentStudy);
                ArrayList childItems = dib.getChildren();
                for (int j = 0; j < childItems.size(); j++) {
                    DisplayItemBean child = (DisplayItemBean) childItems.get(j);
                    inputName = getInputName(child);
                    AddNewSubjectServlet.saveFieldNotes(inputName, discNotes, dndao, dib.getData().getId(), DiscrepancyNoteBean.ITEM_DATA, currentStudy);
                }
            }
        }
        addPageMessage("Discrepancy notes are saved successfully.", request);
        request.setAttribute("id", studySubjectId + "");
        forwardPage(Page.VIEW_STUDY_SUBJECT_SERVLET, request, response);
        // "ViewStudySubject?id=" + studySubjectId));
        return;
    } else {
        request.setAttribute(BEAN_DISPLAY, dsb);
        request.setAttribute(BEAN_ANNOTATIONS, ecb.getAnnotations());
        request.setAttribute("sec", sb);
        request.setAttribute("EventCRFBean", ecb);
        int tabNum = 1;
        if ("".equalsIgnoreCase(fp.getString("tabId"))) {
            tabNum = 1;
        } else {
            tabNum = fp.getInt("tabId");
        }
        request.setAttribute("tabId", new Integer(tabNum).toString());
        // 2808: Signal interviewer.jsp that the containing page is
        // viewSectionData,
        // for the purpose of suppressing discrepancy note icons for the
        // interview date and name fields
        request.setAttribute(ENCLOSING_PAGE, "viewSectionData");
        if ("yes".equalsIgnoreCase(printVersion)) {
            forwardPage(Page.VIEW_SECTION_DATA_ENTRY_PRINT, request, response);
        } else {
            forwardPage(Page.VIEW_SECTION_DATA_ENTRY, request, response);
        }
    }
}

Example 69 with CRFVersionBean

use of org.akaza.openclinica.bean.submit.CRFVersionBean in project OpenClinica by OpenClinica.

the class ViewSectionDataEntryPreview method processRequest.

@Override
public void processRequest(HttpServletRequest request, HttpServletResponse response) throws Exception {
    FormProcessor fp = new FormProcessor(request);
    EventCRFBean ecb = (EventCRFBean) request.getAttribute(INPUT_EVENT_CRF);
    SectionBean sb = (SectionBean) request.getAttribute(SECTION_BEAN);
    // These numbers will be zero if the
    // params are not present in the URL
    int crfid = fp.getInt("crfId");
    int tabNum = fp.getInt("tabId");
    HttpSession session = request.getSession();
    request.setAttribute("crfId", crfid);
    String crfName = "";
    String verNumber = "";
    // All the data on the uploaded Excel file
    // see org.akaza.openclinica.control.admin.SpreadsheetPreview
    // createCrfMetaObject() method
    Map<String, Map> crfMap = (Map) session.getAttribute("preview_crf");
    if (crfMap == null) {
        // addPageMessage
        String msg = respage.getString("preview_data_has_timed_out");
        this.addPageMessage(msg, request);
        LOGGER.debug("The session attribute \"preview_crf\" has expired or gone out of scope in: " + this.getClass().getName());
        this.forwardPage(Page.CRF_LIST_SERVLET, request, response);
    }
    Map<String, String> crfIdnameInfo = null;
    if (crfMap != null) {
        crfIdnameInfo = crfMap.get("crf_info");
    }
    // Get the CRF name and version String
    if (crfIdnameInfo != null) {
        Map.Entry mapEnt = null;
        for (Object element : crfIdnameInfo.entrySet()) {
            mapEnt = (Map.Entry) element;
            if (((String) mapEnt.getKey()).equalsIgnoreCase("crf_name")) {
                crfName = (String) mapEnt.getValue();
            }
            if (((String) mapEnt.getKey()).equalsIgnoreCase("version")) {
                verNumber = (String) mapEnt.getValue();
            }
        }
    }
    // Set up the beans that DisplaySectionBean and the preview
    // depend on
    EventCRFBean ebean = new EventCRFBean();
    CRFVersionBean crfverBean = new CRFVersionBean();
    crfverBean.setName(verNumber);
    CRFBean crfbean = new CRFBean();
    crfbean.setId(crfid);
    crfbean.setName(crfName);
    ebean.setCrf(crfbean);
    // This happens in ViewSectionDataEntry
    // It's an assumption that it has to happen here as well
    ecb = ebean;
    // All the groups data, if it's present in the CRF
    Map<Integer, Map<String, String>> groupsMap = null;
    if (crfMap != null)
        groupsMap = crfMap.get("groups");
    // Find out whether this CRF involves groups
    // At least one group is involved if the groups Map is not null or
    // empty, and the first group entry (there may be only one) has a
    // valid group label
    boolean hasGroups = false;
    /*
         * if(groupsMap != null && (! groupsMap.isEmpty()) &&
         * groupsMap.get(1).get("group_label").length() > 0) hasGroups = true;
         */
    // A SortedMap containing the row number as the key, and the
    // section headers/values (contained in a Map) as the value
    Map<Integer, Map<String, String>> sectionsMap = null;
    if (crfMap != null)
        sectionsMap = crfMap.get("sections");
    // The itemsMap contains the spreadsheet table items row number as a
    // key,
    // followed by a map of the column names/values; it contains values for
    // display
    // such as 'left item text'
    Map<Integer, Map<String, String>> itemsMap = null;
    if (crfMap != null)
        itemsMap = crfMap.get("items");
    // Create a list of FormGroupBeans from Maps of groups,
    // items, and sections
    BeanFactory beanFactory = new BeanFactory();
    // FormBeanUtil formUtil = new FormBeanUtil();
    // Set up sections for the preview
    Map.Entry me = null;
    SectionBean secbean = null;
    ArrayList<SectionBean> allSectionBeans = new ArrayList<SectionBean>();
    String name_str = "";
    String pageNum = "";
    Map secMap = null;
    // SpreadsheetPreviewNw returns doubles (via the
    // HSSFCell API, which parses Excel files)
    // as Strings (such as "1.0") for "1" in a spreadsheet cell,
    // so make sure only "1" is displayed using
    // this NumberFormat object
    NumberFormat numFormatter = NumberFormat.getInstance();
    numFormatter.setMaximumFractionDigits(0);
    if (sectionsMap != null) {
        for (Object element : sectionsMap.entrySet()) {
            secbean = new SectionBean();
            me = (Map.Entry) element;
            secMap = (Map) me.getValue();
            name_str = (String) secMap.get("section_label");
            secbean.setName(name_str);
            secbean.setTitle((String) secMap.get("section_title"));
            secbean.setInstructions((String) secMap.get("instructions"));
            secbean.setSubtitle((String) secMap.get("subtitle"));
            pageNum = (String) secMap.get("page_number");
            // type a number in that Spreadsheet cell
            try {
                pageNum = numFormatter.format(Double.parseDouble(pageNum));
            } catch (NumberFormatException nfe) {
                pageNum = "";
            }
            secbean.setPageNumberLabel(pageNum);
            // Sift through the items to see if their section label matches
            // the section's section_label column
            secbean.setNumItems(this.getNumberOfItems(itemsMap, secbean.getName()));
            allSectionBeans.add(secbean);
        }
    }
    DisplayTableOfContentsBean dtocBean = new DisplayTableOfContentsBean();
    // Methods should just take Lists, the interface, not
    // ArrayList only!
    dtocBean.setSections(allSectionBeans);
    request.setAttribute("toc", dtocBean);
    request.setAttribute("sectionNum", allSectionBeans.size() + "");
    // Assuming that the super class' SectionBean sb variable must be
    // initialized,
    // since it happens in ViewSectionDataEntryServlet. TODO: verify this
    sb = allSectionBeans.get(0);
    // This is the StudySubjectBean
    // Not sure if this is needed for a Preview, but leaving
    // it in for safety/consisitency reasons
    request.setAttribute(INPUT_EVENT_CRF, ecb);
    request.setAttribute(SECTION_BEAN, sb);
    setupStudyBean(request);
    // Create a DisplaySectionBean for the SectionBean specified by the
    // tab number.
    tabNum = tabNum == 0 ? 1 : tabNum;
    String sectionTitle = getSectionColumnBySecNum(sectionsMap, tabNum, SECTION_TITLE);
    String secLabel = getSectionColumnBySecNum(sectionsMap, tabNum, SECTION_LABEL);
    String secSubtitle = getSectionColumnBySecNum(sectionsMap, tabNum, SECTION_SUBTITLE);
    String instructions = getSectionColumnBySecNum(sectionsMap, tabNum, INSTRUCTIONS);
    int secBorders = getSectionBordersBySecNum(sectionsMap, tabNum, BORDERS);
    DisplaySectionBean displaySection = beanFactory.createDisplaySectionBean(itemsMap, sectionTitle, secLabel, secSubtitle, instructions, crfName, secBorders);
    //
    // the variable hasGroups should only be true if the group appears in
    // this section
    List<DisplayItemBean> disBeans = displaySection.getItems();
    ItemFormMetadataBean metaBean;
    String groupLabel;
    hasGroups = false;
    for (DisplayItemBean diBean : disBeans) {
        metaBean = diBean.getMetadata();
        groupLabel = metaBean.getGroupLabel();
        if (groupLabel != null && groupLabel.length() > 0) {
            hasGroups = true;
            break;
        }
    }
    // Create groups associated with this section
    List<DisplayItemGroupBean> disFormGroupBeans = null;
    if (hasGroups) {
        disFormGroupBeans = beanFactory.createGroupBeans(itemsMap, groupsMap, secLabel, crfName);
        displaySection.setDisplayFormGroups(disFormGroupBeans);
    }
    /*
         * DisplaySectionBean displaySection =
         * beanFactory.createDisplaySectionBean (itemsMap, sectionTitle,
         * secLabel, secSubtitle, instructions, crfName);
         */
    displaySection.setCrfVersion(crfverBean);
    displaySection.setCrf(crfbean);
    displaySection.setEventCRF(ebean);
    // Not sure if this is needed? The JSPs pull it out
    // as a request attribute
    SectionBean aSecBean = new SectionBean();
    request.setAttribute(BEAN_DISPLAY, displaySection);
    // TODO: verify these attributes, from the original servlet, are
    // necessary
    request.setAttribute("sec", aSecBean);
    request.setAttribute("EventCRFBean", ebean);
    try {
        request.setAttribute("tabId", Integer.toString(tabNum));
    } catch (NumberFormatException nfe) {
        request.setAttribute("tabId", new Integer("1"));
    }
    if (hasGroups) {
        LOGGER.debug("has group, new_table is true");
        request.setAttribute("new_table", true);
    }
    // YW 07-23-2007 << for issue 0000937
    forwardPage(Page.CREATE_CRF_VERSION_CONFIRM, request, response);
// YW >>
}

Example 70 with CRFVersionBean

use of org.akaza.openclinica.bean.submit.CRFVersionBean in project OpenClinica by OpenClinica.

the class ViewStudySubjectServlet method populateUncompletedCRFsWithCRFAndVersions.

public static void populateUncompletedCRFsWithCRFAndVersions(DataSource ds, ArrayList uncompletedEventDefinitionCRFs) {
    CRFDAO cdao = new CRFDAO(ds);
    CRFVersionDAO cvdao = new CRFVersionDAO(ds);
    int size = uncompletedEventDefinitionCRFs.size();
    for (int i = 0; i < size; i++) {
        DisplayEventDefinitionCRFBean dedcrf = (DisplayEventDefinitionCRFBean) uncompletedEventDefinitionCRFs.get(i);
        CRFBean cb = (CRFBean) cdao.findByPK(dedcrf.getEdc().getCrfId());
        dedcrf.getEdc().setCrf(cb);
        ArrayList theVersions = (ArrayList) cvdao.findAllActiveByCRF(dedcrf.getEdc().getCrfId());
        ArrayList versions = new ArrayList();
        HashMap<String, CRFVersionBean> crfVersionIds = new HashMap<String, CRFVersionBean>();
        for (int j = 0; j < theVersions.size(); j++) {
            CRFVersionBean crfVersion = (CRFVersionBean) theVersions.get(j);
            crfVersionIds.put(String.valueOf(crfVersion.getId()), crfVersion);
        }
        if (!dedcrf.getEdc().getSelectedVersionIds().equals("")) {
            String[] kk = dedcrf.getEdc().getSelectedVersionIds().split(",");
            for (String string : kk) {
                if (crfVersionIds.get(string) != null) {
                    versions.add(crfVersionIds.get(string));
                }
            }
        } else {
            versions = theVersions;
        }
        dedcrf.getEdc().setVersions(versions);
        uncompletedEventDefinitionCRFs.set(i, dedcrf);
    }
}