Examples with CRFVersionBean org.akaza.openclinica.bean.submit.CRFVersionBean used on opensource projects

Example 81 with CRFVersionBean

use of org.akaza.openclinica.bean.submit.CRFVersionBean in project OpenClinica by OpenClinica.

the class StudyInfoPanel method setData.

/**
     * setData, the external function which creates data for the panel to
     * reflect.
     *
     * @param page
     * @param session
     * @param request
     */
public void setData(Page page, HttpSession session, HttpServletRequest request) {
    Locale locale = request.getLocale();
    resword = ResourceBundleProvider.getWordsBundle();
    local_sdf = new SimpleDateFormat(ResourceBundleProvider.getFormatBundle(locale).getString("date_format_string"));
    try {
        // defaults, can be reset by mistake by running through one page,
        // tbh
        this.setStudyInfoShown(true);
        this.setOrderedData(false);
        // try to avoid errors, tbh
        if (page.equals(Page.CREATE_DATASET_1)) {
            this.reset();
        // this.setData("Number of Steps", "5");
        } else if (page.equals(Page.CREATE_DATASET_2) || page.equals(Page.CREATE_DATASET_EVENT_ATTR) || page.equals(Page.CREATE_DATASET_SUB_ATTR) || page.equals(Page.CREATE_DATASET_CRF_ATTR) || page.equals(Page.CREATE_DATASET_GROUP_ATTR) || page.equals(Page.CREATE_DATASET_VIEW_SELECTED)) {
            HashMap eventlist = (HashMap) request.getAttribute("eventlist");
            ArrayList displayData = generateEventTree(eventlist);
            this.reset();
            this.setUserOrderedData(displayData);
            this.setStudyInfoShown(false);
            this.setOrderedData(true);
            this.setCreateDataset(true);
            this.setSubmitDataModule(false);
            this.setExtractData(false);
        } else if (page.equals(Page.CREATE_DATASET_3)) {
            this.reset();
            this.setStudyInfoShown(false);
            this.setOrderedData(false);
            this.setCreateDataset(true);
            this.setSubmitDataModule(false);
            this.setExtractData(false);
            DatasetBean dsb = (DatasetBean) session.getAttribute("newDataset");
            int ev_count = dsb.getItemIds().size();
            this.setData(resword.getString("items_selected"), new Integer(ev_count).toString());
        } else if (page.equals(Page.CREATE_DATASET_4)) {
            this.reset();
            this.setStudyInfoShown(false);
            this.setOrderedData(false);
            this.setCreateDataset(true);
            this.setSubmitDataModule(false);
            this.setExtractData(false);
            this.removeData(resword.getString("beginning_date"));
            this.removeData(resword.getString("ending_date"));
            DatasetBean dsb = (DatasetBean) session.getAttribute("newDataset");
            int ev_count = dsb.getItemIds().size();
            this.setData(resword.getString("items_selected"), new Integer(ev_count).toString());
            if ("01/01/1900".equals(english_sdf.format(dsb.getDateStart()))) {
                this.setData(resword.getString("beginning_date"), resword.getString("not_specified"));
            } else {
                this.setData(resword.getString("beginning_date"), local_sdf.format(dsb.getDateStart()));
            }
            if ("12/31/2100".equals(english_sdf.format(dsb.getDateEnd()))) {
                this.setData(resword.getString("ending_date"), resword.getString("not_specified"));
            } else {
                this.setData(resword.getString("ending_date"), local_sdf.format(dsb.getDateEnd()));
            }
            FilterBean fb = (FilterBean) session.getAttribute("newFilter");
            if (fb != null) {
                this.setData("Added Filter", fb.getName());
            }
        } else if (page.equals(Page.APPLY_FILTER)) {
            DatasetBean dsb = (DatasetBean) session.getAttribute("newDataset");
            this.setData(resword.getString("beginning_date"), local_sdf.format(dsb.getDateStart()));
            this.setData(resword.getString("ending_date"), local_sdf.format(dsb.getDateEnd()));
        } else if (page.equals(Page.CONFIRM_DATASET)) {
            this.reset();
            this.setStudyInfoShown(false);
            this.setOrderedData(false);
            this.setCreateDataset(true);
            this.setSubmitDataModule(false);
            this.setExtractData(false);
            DatasetBean dsb = (DatasetBean) session.getAttribute("newDataset");
            this.setData(resword.getString("dataset_name"), dsb.getName());
            this.setData(resword.getString("dataset_description"), dsb.getDescription());
            int ev_count = dsb.getItemIds().size();
            this.setData(resword.getString("items_selected"), new Integer(ev_count).toString());
            if ("01/01/1900".equals(english_sdf.format(dsb.getDateStart()))) {
                this.setData(resword.getString("beginning_date"), resword.getString("not_specified"));
            } else {
                this.setData(resword.getString("beginning_date"), local_sdf.format(dsb.getDateStart()));
            }
            if ("12/31/2100".equals(english_sdf.format(dsb.getDateEnd()))) {
                this.setData(resword.getString("ending_date"), resword.getString("not_specified"));
            } else {
                this.setData(resword.getString("ending_date"), local_sdf.format(dsb.getDateEnd()));
            }
            FilterBean fb = (FilterBean) session.getAttribute("newFilter");
            if (fb != null) {
                this.setData(resword.getString("added_filter"), fb.getName());
            }
        } else if (page.equals(Page.CREATE_FILTER_SCREEN_3_1)) {
            CRFVersionBean cvBean = (CRFVersionBean) session.getAttribute("cvBean");
            this.setData(resword.getString("CRF_version_selected"), cvBean.getName());
        } else if (page.equals(Page.CREATE_FILTER_SCREEN_3_2)) {
            SectionBean secBean = (SectionBean) session.getAttribute("secBean");
            this.setData(resword.getString("section_selected"), secBean.getName());
            Collection metadatas = (Collection) request.getAttribute("metadatas");
            this.setData(resword.getString("number_of_questions"), new Integer(metadatas.size()).toString());
        } else if (page.equals(Page.CREATE_FILTER_SCREEN_4)) {
        } else if (page.equals(Page.CREATE_FILTER_SCREEN_5)) {
        // blank here to prevent data reset, tbh
        } else if (page.equals(Page.ADMIN_SYSTEM)) {
        // blank here , info set in servlet itself
        } else if (page.equals(Page.VIEW_STUDY_SUBJECT) || page.equals(Page.LIST_EVENTS_FOR_SUBJECT)) {
            // special case, unlocks study name, subject name, and
            // visits
            // TODO set all this up, tbh
            /*
                 * set up the side info panel to create the following upon entry
                 * from the ViewStudyServlet Study X Subject Y StudyEventDef Z1
                 * StudyEventDef Z2 <status-tag> CRF A1 <status-tag> CRF A2 Z1
                 * should be collapsible/expandible, etc.
                 *
                 * We can pull things from the session and the request:
                 */
            /*
                 * StudyBean study = (StudyBean) request.getAttribute("study");
                 * StudySubjectBean studySubject = (StudySubjectBean)
                 * request.getAttribute("studySub"); EntityBeanTable table =
                 * (EntityBeanTable) request.getAttribute("table"); EventCRFBean
                 * ecb = (EventCRFBean)request.getAttribute("eventCRF");
                 * this.reset(); ArrayList rows = table.getRows(); ArrayList
                 * beans = DisplayStudyEventBean.generateBeansFromRows(rows);
                 *
                 *
                 * addStudyEventTree(study, studySubject, beans, ecb);
                 */
            // this.setIconInfoShown(false);
            // this.setManageSubject(true);
            this.reset();
            this.setStudyInfoShown(true);
            this.setOrderedData(true);
            this.setExtractData(false);
            this.setSubmitDataModule(false);
            this.setCreateDataset(false);
            this.setIconInfoShown(false);
            this.setManageSubject(true);
            request.setAttribute("showDDEIcon", Boolean.TRUE);
        } else if (page.equals(Page.ENTER_DATA_FOR_STUDY_EVENT) || page.equals(Page.ENTER_DATA_FOR_STUDY_EVENT_SERVLET)) {
            StudyBean study = (StudyBean) session.getAttribute("study");
            StudySubjectBean studySubject = (StudySubjectBean) request.getAttribute("studySubject");
            ArrayList beans = (ArrayList) request.getAttribute("beans");
            EventCRFBean ecb = (EventCRFBean) request.getAttribute("eventCRF");
            this.reset();
            addStudyEventTree(study, studySubject, beans, ecb, true);
            this.setStudyInfoShown(false);
            this.setOrderedData(true);
            this.setSubmitDataModule(true);
            this.setExtractData(false);
            this.setCreateDataset(false);
            this.setIconInfoShown(false);
        } else if (page.equals(Page.INTERVIEWER) || page.equals(Page.TABLE_OF_CONTENTS) || page.equals(Page.TABLE_OF_CONTENTS_SERVLET) || page.equals(Page.INITIAL_DATA_ENTRY) || page.equals(Page.INITIAL_DATA_ENTRY_SERVLET) || page.equals(Page.DOUBLE_DATA_ENTRY) || page.equals(Page.DOUBLE_DATA_ENTRY_SERVLET) || page.equals(Page.ADMIN_EDIT) || page.equals(Page.ADMIN_EDIT_SERVLET)) {
            /*
                 * pages designed to also follow the above format; check to see
                 * if they are in the session already, and does not refresh.
                 * TODO refine and test
                 */
            StudyBean study = (StudyBean) session.getAttribute("study");
            StudySubjectBean studySubject = (StudySubjectBean) request.getAttribute("studySubject");
            ArrayList beans = (ArrayList) request.getAttribute("beans");
            EventCRFBean ecb = (EventCRFBean) request.getAttribute("eventCRF");
            this.reset();
            addStudyEventTree(study, studySubject, beans, ecb, false);
            this.setStudyInfoShown(false);
            this.setOrderedData(true);
            this.setSubmitDataModule(true);
            this.setExtractData(false);
            this.setCreateDataset(false);
            this.setIconInfoShown(true);
        } else if (page.equals(Page.EDIT_DATASET)) {
            this.reset();
            // HashMap eventlist = (HashMap)
            // request.getAttribute("eventlist");
            HashMap eventlist = (LinkedHashMap) session.getAttribute("eventsForCreateDataset");
            ArrayList displayData = generateEventTree(eventlist);
            this.setCreateDataset(true);
            this.setOrderedData(true);
            this.setUserOrderedData(displayData);
            this.setStudyInfoShown(true);
            this.setSubmitDataModule(false);
            this.setExtractData(false);
            DatasetBean dsb = (DatasetBean) request.getAttribute("dataset");
            this.setData(resword.getString("dataset_name"), dsb.getName());
            this.setData(resword.getString("date_created"), local_sdf.format(dsb.getCreatedDate()));
            this.setData(resword.getString("dataset_owner"), dsb.getOwner().getName());
            this.setData(resword.getString("date_last_run"), local_sdf.format(dsb.getDateLastRun()));
        } else if (page.equals(Page.EXPORT_DATASETS)) {
            this.setCreateDataset(false);
        } else if (page.equals(Page.GENERATE_DATASET_HTML)) {
            DatasetBean db = (DatasetBean) request.getAttribute("dataset");
            ExtractBean exbean = (ExtractBean) request.getAttribute("extractBean");
            this.reset();
            ArrayList displayData = new ArrayList();
            displayData = generateDatasetTree(exbean, db);
            this.setUserOrderedData(displayData);
            this.setStudyInfoShown(false);
            this.setOrderedData(true);
            this.setExtractData(true);
            this.setSubmitDataModule(false);
            this.setCreateDataset(false);
        } else if (page.equals(Page.LIST_STUDY_SUBJECT) || page.equals(Page.LIST_STUDY_SUBJECTS) || page.equals(Page.SUBMIT_DATA) || page.equals(Page.SUBMIT_DATA_SERVLET)) {
            this.reset();
            this.setStudyInfoShown(true);
            this.setOrderedData(true);
            this.setExtractData(false);
            this.setSubmitDataModule(false);
            this.setCreateDataset(false);
            this.setIconInfoShown(false);
            this.setManageSubject(true);
            // don't want to show DDE icon key for subject matrix page
            request.setAttribute("showDDEIcon", Boolean.FALSE);
        } else if (page.equals(Page.VIEW_SECTION_DATA_ENTRY) || page.equals(Page.VIEW_SECTION_DATA_ENTRY_SERVLET)) {
            this.reset();
            this.setStudyInfoShown(true);
            this.setOrderedData(true);
            this.setExtractData(false);
            this.setSubmitDataModule(false);
            this.setCreateDataset(false);
            this.setIconInfoShown(true);
            this.setManageSubject(false);
        } else if (page.equals(Page.CREATE_SUBJECT_GROUP_CLASS) || page.equals(Page.CREATE_SUBJECT_GROUP_CLASS_CONFIRM) || page.equals(Page.UPDATE_SUBJECT_GROUP_CLASS) || page.equals(Page.UPDATE_SUBJECT_GROUP_CLASS_CONFIRM)) {
            this.reset();
            this.setStudyInfoShown(true);
            this.setOrderedData(true);
            this.setExtractData(false);
            this.setSubmitDataModule(false);
            this.setCreateDataset(false);
            this.setIconInfoShown(true);
            this.setManageSubject(false);
        } else {
            // automatically reset if we don't know what's happening
            this.reset();
            this.setStudyInfoShown(true);
            this.setOrderedData(true);
            this.setExtractData(false);
            this.setSubmitDataModule(false);
            this.setCreateDataset(false);
            this.setIconInfoShown(true);
            this.setManageSubject(false);
        }
    } catch (Exception e) {
        this.reset();
    }
}

Example 82 with CRFVersionBean

use of org.akaza.openclinica.bean.submit.CRFVersionBean in project OpenClinica by OpenClinica.

the class ViewItemDetailServlet method processRequest.

@Override
public void processRequest() throws Exception {
    FormProcessor fp = new FormProcessor(request);
    int itemId = fp.getInt(ITEM_ID);
    String itemOid = fp.getString(ITEM_OID);
    ItemDAO idao = new ItemDAO(sm.getDataSource());
    ItemFormMetadataDAO ifmdao = new ItemFormMetadataDAO(sm.getDataSource());
    ItemGroupMetadataDAO igmdao = new ItemGroupMetadataDAO(sm.getDataSource());
    CRFVersionDAO cvdao = new CRFVersionDAO(sm.getDataSource());
    CRFDAO cdao = new CRFDAO(sm.getDataSource());
    SectionDAO sectionDao = new SectionDAO(sm.getDataSource());
    if (itemId == 0 && itemOid == null) {
        addPageMessage(respage.getString("please_choose_an_item_first"));
        forwardPage(Page.ITEM_DETAIL);
        return;
    }
    ItemBean item = itemId > 0 ? (ItemBean) idao.findByPK(itemId) : (ItemBean) idao.findByOid(itemOid).get(0);
    ArrayList versions = idao.findAllVersionsByItemId(item.getId());
    ArrayList versionItems = new ArrayList();
    CRFBean crf = null;
    ItemFormMetadataBean imfBean = null;
    // finds each item metadata for each version
    for (int i = 0; i < versions.size(); i++) {
        Integer versionId = (Integer) versions.get(i);
        CRFVersionBean version = (CRFVersionBean) cvdao.findByPK(versionId.intValue());
        if (versionId != null && versionId.intValue() > 0) {
            // YW 08-22-2007
            if (igmdao.versionIncluded(versionId)) {
                imfBean = ifmdao.findByItemIdAndCRFVersionId(item.getId(), versionId.intValue());
                imfBean.setCrfVersionName(version.getName());
                crf = (CRFBean) cdao.findByPK(version.getCrfId());
                imfBean.setCrfName(crf.getName());
                versionItems.add(imfBean);
            } else {
                imfBean = ifmdao.findByItemIdAndCRFVersionIdNotInIGM(item.getId(), versionId.intValue());
                imfBean.setCrfVersionName(version.getName());
                crf = (CRFBean) cdao.findByPK(version.getCrfId());
                imfBean.setCrfName(crf.getName());
                versionItems.add(imfBean);
            }
        }
    }
    SectionBean section = (SectionBean) sectionDao.findByPK(imfBean.getSectionId());
    request.setAttribute(VERSION_ITEMS, versionItems);
    request.setAttribute(ITEM_BEAN, item);
    request.setAttribute("crf", crf);
    request.setAttribute("section", section);
    request.setAttribute("ifmdBean", imfBean);
    forwardPage(Page.ITEM_DETAIL);
}

Example 83 with CRFVersionBean

use of org.akaza.openclinica.bean.submit.CRFVersionBean in project OpenClinica by OpenClinica.

the class RemoveEventDefinitionServlet method processRequest.

@Override
public void processRequest() throws Exception {
    String idString = request.getParameter("id");
    int defId = Integer.valueOf(idString.trim()).intValue();
    StudyEventDefinitionDAO sdao = new StudyEventDefinitionDAO(sm.getDataSource());
    StudyEventDefinitionBean sed = (StudyEventDefinitionBean) sdao.findByPK(defId);
    //        checkRoleByUserAndStudy(ub.getName(), sed.getStudyId(), 0);
    if (currentStudy.getId() != sed.getStudyId()) {
        addPageMessage(respage.getString("no_have_correct_privilege_current_study") + " " + respage.getString("change_active_study_or_contact"));
        forwardPage(Page.MENU_SERVLET);
        return;
    }
    // find all CRFs
    EventDefinitionCRFDAO edao = new EventDefinitionCRFDAO(sm.getDataSource());
    ArrayList eventDefinitionCRFs = (ArrayList) edao.findAllByDefinition(defId);
    CRFVersionDAO cvdao = new CRFVersionDAO(sm.getDataSource());
    CRFDAO cdao = new CRFDAO(sm.getDataSource());
    for (int i = 0; i < eventDefinitionCRFs.size(); i++) {
        EventDefinitionCRFBean edc = (EventDefinitionCRFBean) eventDefinitionCRFs.get(i);
        ArrayList versions = (ArrayList) cvdao.findAllByCRF(edc.getCrfId());
        edc.setVersions(versions);
        CRFBean crf = (CRFBean) cdao.findByPK(edc.getCrfId());
        edc.setCrfName(crf.getName());
        CRFVersionBean defaultVersion = (CRFVersionBean) cvdao.findByPK(edc.getDefaultVersionId());
        edc.setDefaultVersionName(defaultVersion.getName());
        CRFBean cBean = (CRFBean) cdao.findByPK(edc.getCrfId());
        String crfPath = sed.getOid() + "." + cBean.getOid();
        edc.setOffline(getEventDefinitionCrfTagService().getEventDefnCrfOfflineStatus(2, crfPath, true));
    }
    // finds all events
    StudyEventDAO sedao = new StudyEventDAO(sm.getDataSource());
    ArrayList events = (ArrayList) sedao.findAllByDefinition(sed.getId());
    String action = request.getParameter("action");
    if (StringUtil.isBlank(idString)) {
        addPageMessage(respage.getString("please_choose_a_SED_to_remove"));
        forwardPage(Page.LIST_DEFINITION_SERVLET);
    } else {
        if ("confirm".equalsIgnoreCase(action)) {
            if (!sed.getStatus().equals(Status.AVAILABLE)) {
                addPageMessage(respage.getString("this_SED_is_not_available_for_this_study") + respage.getString("please_contact_sysadmin_for_more_information"));
                forwardPage(Page.LIST_DEFINITION_SERVLET);
                return;
            }
            StudyParameterValueDAO spvdao = new StudyParameterValueDAO(sm.getDataSource());
            String participateFormStatus = spvdao.findByHandleAndStudy(sed.getStudyId(), "participantPortal").getValue();
            if (participateFormStatus.equals("enabled"))
                baseUrl();
            request.setAttribute("participateFormStatus", participateFormStatus);
            request.setAttribute("definitionToRemove", sed);
            request.setAttribute("eventDefinitionCRFs", eventDefinitionCRFs);
            request.setAttribute("events", events);
            forwardPage(Page.REMOVE_DEFINITION);
        } else {
            logger.info("submit to remove the definition");
            // remove definition
            sed.setStatus(Status.DELETED);
            sed.setUpdater(ub);
            sed.setUpdatedDate(new Date());
            sdao.update(sed);
            // remove all crfs
            for (int j = 0; j < eventDefinitionCRFs.size(); j++) {
                EventDefinitionCRFBean edc = (EventDefinitionCRFBean) eventDefinitionCRFs.get(j);
                if (!edc.getStatus().equals(Status.DELETED)) {
                    edc.setStatus(Status.AUTO_DELETED);
                    edc.setUpdater(ub);
                    edc.setUpdatedDate(new Date());
                    edao.update(edc);
                }
            }
            // remove all events
            EventCRFDAO ecdao = new EventCRFDAO(sm.getDataSource());
            for (int j = 0; j < events.size(); j++) {
                StudyEventBean event = (StudyEventBean) events.get(j);
                if (!event.getStatus().equals(Status.DELETED)) {
                    event.setStatus(Status.AUTO_DELETED);
                    event.setUpdater(ub);
                    event.setUpdatedDate(new Date());
                    sedao.update(event);
                    ArrayList eventCRFs = ecdao.findAllByStudyEvent(event);
                    // remove all the item data
                    ItemDataDAO iddao = new ItemDataDAO(sm.getDataSource());
                    for (int k = 0; k < eventCRFs.size(); k++) {
                        EventCRFBean eventCRF = (EventCRFBean) eventCRFs.get(k);
                        if (!eventCRF.getStatus().equals(Status.DELETED)) {
                            eventCRF.setStatus(Status.AUTO_DELETED);
                            eventCRF.setUpdater(ub);
                            eventCRF.setUpdatedDate(new Date());
                            ecdao.update(eventCRF);
                            ArrayList itemDatas = iddao.findAllByEventCRFId(eventCRF.getId());
                            for (int a = 0; a < itemDatas.size(); a++) {
                                ItemDataBean item = (ItemDataBean) itemDatas.get(a);
                                if (!item.getStatus().equals(Status.DELETED)) {
                                    item.setStatus(Status.AUTO_DELETED);
                                    item.setUpdater(ub);
                                    item.setUpdatedDate(new Date());
                                    iddao.update(item);
                                }
                            }
                        }
                    }
                }
            }
            String emailBody = respage.getString("the_SED") + sed.getName() + " " + respage.getString("has_been_removed_from_the_study") + currentStudy.getName() + ".";
            addPageMessage(emailBody);
            //                sendEmail(emailBody);
            forwardPage(Page.LIST_DEFINITION_SERVLET);
        }
    }
}

Example 84 with CRFVersionBean

use of org.akaza.openclinica.bean.submit.CRFVersionBean in project OpenClinica by OpenClinica.

the class PrintEventCRFServlet method processRequest.

@Override
public void processRequest(HttpServletRequest request, HttpServletResponse response) throws Exception {
    FormProcessor fp = new FormProcessor(request);
    StudyBean currentStudy = (StudyBean) request.getSession().getAttribute("study");
    SectionBean sb = (SectionBean) request.getAttribute(SECTION_BEAN);
    // The PrintDataEntry servlet handles this parameter
    int eventCRFId = fp.getInt("ecId");
    //JN:The following were the the global variables, moved as local.
    EventCRFBean ecb = (EventCRFBean) request.getAttribute(INPUT_EVENT_CRF);
    StudyEventDefinitionDAO sedao = new StudyEventDefinitionDAO(getDataSource());
    int defId = fp.getInt("id", true);
    boolean isSubmitted = false;
    ArrayList<SectionBean> allSectionBeans;
    if (defId == 0) {
        addPageMessage(respage.getString("please_choose_a_definition_to_view"), request);
        forwardPage(Page.LIST_DEFINITION_SERVLET, request, response);
    } else {
        // definition id
        StudyEventDefinitionBean sed = (StudyEventDefinitionBean) sedao.findByPK(defId);
        EventDefinitionCRFDAO edao = new EventDefinitionCRFDAO(getDataSource());
        ArrayList eventDefinitionCRFs = (ArrayList) edao.findAllByDefinition(defId);
        CRFVersionDAO cvdao = new CRFVersionDAO(getDataSource());
        CRFDAO cdao = new CRFDAO(getDataSource());
        ArrayList defaultVersions = new ArrayList();
        for (int i = 0; i < eventDefinitionCRFs.size(); i++) {
            EventDefinitionCRFBean edc = (EventDefinitionCRFBean) eventDefinitionCRFs.get(i);
            ArrayList versions = (ArrayList) cvdao.findAllByCRF(edc.getCrfId());
            edc.setVersions(versions);
            CRFBean crf = (CRFBean) cdao.findByPK(edc.getCrfId());
            // edc.setCrfLabel(crf.getLabel());
            edc.setCrfName(crf.getName());
            // to show/hide edit action on jsp page
            if (crf.getStatus().equals(Status.AVAILABLE)) {
                edc.setOwner(crf.getOwner());
            }
            CRFVersionBean defaultVersion = (CRFVersionBean) cvdao.findByPK(edc.getDefaultVersionId());
            //There could be separate EventDefinitionCRF objects with same default version id.
            if (defaultVersions.contains(defaultVersion)) {
                continue;
            }
            edc.setDefaultVersionName(defaultVersion.getName());
            if (edc.getStatus().isAvailable()) {
                defaultVersions.add(defaultVersion);
            }
        }
        // Whether IE6 or IE7 is involved
        String isIE = fp.getString("ie");
        if ("y".equalsIgnoreCase(isIE)) {
            request.setAttribute("isInternetExplorer", "true");
        }
        int eventDefinitionCRFId = fp.getInt("eventDefinitionCRFId");
        // EventDefinitionCRFDao findByStudyEventIdAndCRFVersionId(int
        // studyEventId, int crfVersionId)
        SectionDAO sdao = new SectionDAO(getDataSource());
        CRFVersionDAO crfVersionDAO = new CRFVersionDAO(getDataSource());
        CRFDAO crfDao = new CRFDAO(getDataSource());
        ArrayList printCrfBeans = new ArrayList();
        for (Iterator it = defaultVersions.iterator(); it.hasNext(); ) {
            allSectionBeans = new ArrayList<SectionBean>();
            ArrayList sectionBeans = new ArrayList();
            CRFVersionBean crfVersionBean = (CRFVersionBean) it.next();
            // The existing application doesn't print null values, even if they are
            // defined in the event definition
            //            int crfVersionId = fp.getInt("id");
            // BWP 2/7/2008>> Find out if the CRF has grouped tables, and if so,
            // use
            // that dedicated JSP
            ItemGroupDAO itemGroupDao = new ItemGroupDAO(getDataSource());
            // Find truely grouped tables, not groups with a name of 'Ungrouped'
            List<ItemGroupBean> itemGroupBeans = itemGroupDao.findOnlyGroupsByCRFVersionID(crfVersionBean.getId());
            CRFBean crfBean = crfDao.findByVersionId(crfVersionBean.getId());
            if (itemGroupBeans.size() > 0) {
                // get a DisplaySectionBean for each section of the CRF, sort
                // them, then
                // dispatch the request to a print JSP. The constructor for this
                // handler takes
                // a boolean value depending on whether data is involved or not
                // ('false' in terms of this
                // servlet; see PrintDataEntryServlet).
                DisplaySectionBeanHandler handler = new DisplaySectionBeanHandler(false, getDataSource(), getServletContext());
                handler.setCrfVersionId(crfVersionBean.getId());
                handler.setEventCRFId(eventCRFId);
                List<DisplaySectionBean> displaySectionBeans = handler.getDisplaySectionBeans();
                request.setAttribute("listOfDisplaySectionBeans", displaySectionBeans);
                // Make available the CRF names and versions for
                // the web page's header
                CRFVersionBean crfverBean = (CRFVersionBean) crfVersionDAO.findByPK(crfVersionBean.getId());
                request.setAttribute("crfVersionBean", crfverBean);
                request.setAttribute("crfBean", crfBean);
                // Set an attribute signaling that data is not involved
                request.setAttribute("dataInvolved", "false");
                PrintCRFBean printCrfBean = new PrintCRFBean();
                printCrfBean.setDisplaySectionBeans(displaySectionBeans);
                printCrfBean.setCrfVersionBean(crfVersionBean);
                printCrfBean.setCrfBean(crfBean);
                printCrfBean.setEventCrfBean(ecb);
                printCrfBeans.add(printCrfBean);
                printCrfBean.setGrouped(true);
                // IllegalStateException
                continue;
            }
            ecb = new EventCRFBean();
            ecb.setCRFVersionId(crfVersionBean.getId());
            CRFVersionBean version = (CRFVersionBean) crfVersionDAO.findByPK(crfVersionBean.getId());
            ArrayList sects = (ArrayList) sdao.findByVersionId(version.getId());
            for (int i = 0; i < sects.size(); i++) {
                sb = (SectionBean) sects.get(i);
                //super.sb = sb;
                int sectId = sb.getId();
                if (sectId > 0) {
                    allSectionBeans.add((SectionBean) sdao.findByPK(sectId));
                }
            }
            request.setAttribute(ALL_SECTION_BEANS, allSectionBeans);
            request.setAttribute(INPUT_EVENT_CRF, ecb);
            sectionBeans = super.getAllDisplayBeans(request);
            request.setAttribute(SECTION_BEAN, sb);
            DisplaySectionBean dsb = super.getDisplayBean(false, false, request, isSubmitted);
            //            request.setAttribute("allSections", sectionBeans);
            //            request.setAttribute("displayAllCRF", "1");
            //            request.setAttribute(BEAN_DISPLAY, dsb);
            //            request.setAttribute(BEAN_ANNOTATIONS, ecb.getAnnotations());
            //            request.setAttribute("sec", sb);
            //            request.setAttribute("EventCRFBean", super.ecb);
            PrintCRFBean printCrfBean = new PrintCRFBean();
            printCrfBean.setAllSections(sectionBeans);
            printCrfBean.setDisplaySectionBean(dsb);
            printCrfBean.setEventCrfBean(ecb);
            printCrfBean.setCrfVersionBean(crfVersionBean);
            printCrfBean.setCrfBean(crfBean);
            printCrfBeans.add(printCrfBean);
            printCrfBean.setGrouped(false);
        }
        String studyName = null;
        String siteName = null;
        if (currentStudy.getParentStudyId() > 0) {
            studyName = currentStudy.getParentStudyName();
            siteName = currentStudy.getName();
        } else {
            studyName = currentStudy.getName();
        }
        request.setAttribute("printCrfBeans", printCrfBeans);
        request.setAttribute("studyName", studyName);
        request.setAttribute("site", siteName);
        request.setAttribute("eventDefinition", sed.getName());
        forwardPage(Page.VIEW_DEFAULT_CRF_VERSIONS_PRINT, request, response);
    }
}

Example 85 with CRFVersionBean

use of org.akaza.openclinica.bean.submit.CRFVersionBean in project OpenClinica by OpenClinica.

the class RestoreEventCRFServlet method processRequest.

@Override
public void processRequest() throws Exception {
    FormProcessor fp = new FormProcessor(request);
    // eventCRFId
    int eventCRFId = fp.getInt("id");
    // studySubjectId
    int studySubId = fp.getInt("studySubId");
    checkStudyLocked("ViewStudySubject?id" + studySubId, respage.getString("current_study_locked"));
    StudyEventDAO sedao = new StudyEventDAO(sm.getDataSource());
    StudySubjectDAO subdao = new StudySubjectDAO(sm.getDataSource());
    EventCRFDAO ecdao = new EventCRFDAO(sm.getDataSource());
    StudyDAO sdao = new StudyDAO(sm.getDataSource());
    if (eventCRFId == 0) {
        addPageMessage(respage.getString("please_choose_an_event_CRF_to_restore"));
        request.setAttribute("id", new Integer(studySubId).toString());
        forwardPage(Page.VIEW_STUDY_SUBJECT_SERVLET);
    } else {
        EventCRFBean eventCRF = (EventCRFBean) ecdao.findByPK(eventCRFId);
        StudySubjectBean studySub = (StudySubjectBean) subdao.findByPK(studySubId);
        // YW 11-07-2007, an event CRF could not be restored if its study
        // subject has been removed
        Status s = studySub.getStatus();
        if ("removed".equalsIgnoreCase(s.getName()) || "auto-removed".equalsIgnoreCase(s.getName())) {
            addPageMessage(resword.getString("event_CRF") + resterm.getString("could_not_be") + resterm.getString("restored") + "." + respage.getString("study_subject_has_been_deleted"));
            request.setAttribute("id", new Integer(studySubId).toString());
            forwardPage(Page.VIEW_STUDY_SUBJECT_SERVLET);
        }
        // YW
        request.setAttribute("studySub", studySub);
        // construct info needed on view event crf page
        CRFDAO cdao = new CRFDAO(sm.getDataSource());
        CRFVersionDAO cvdao = new CRFVersionDAO(sm.getDataSource());
        int crfVersionId = eventCRF.getCRFVersionId();
        CRFBean cb = cdao.findByVersionId(crfVersionId);
        eventCRF.setCrf(cb);
        CRFVersionBean cvb = (CRFVersionBean) cvdao.findByPK(crfVersionId);
        eventCRF.setCrfVersion(cvb);
        // then get the definition so we can call
        // DisplayEventCRFBean.setFlags
        int studyEventId = eventCRF.getStudyEventId();
        StudyEventBean event = (StudyEventBean) sedao.findByPK(studyEventId);
        int studyEventDefinitionId = sedao.getDefinitionIdFromStudyEventId(studyEventId);
        StudyEventDefinitionDAO seddao = new StudyEventDefinitionDAO(sm.getDataSource());
        StudyEventDefinitionBean sed = (StudyEventDefinitionBean) seddao.findByPK(studyEventDefinitionId);
        event.setStudyEventDefinition(sed);
        request.setAttribute("event", event);
        EventDefinitionCRFDAO edcdao = new EventDefinitionCRFDAO(sm.getDataSource());
        StudyBean study = (StudyBean) sdao.findByPK(studySub.getStudyId());
        EventDefinitionCRFBean edc = edcdao.findByStudyEventDefinitionIdAndCRFId(study, studyEventDefinitionId, cb.getId());
        DisplayEventCRFBean dec = new DisplayEventCRFBean();
        dec.setEventCRF(eventCRF);
        dec.setFlags(eventCRF, ub, currentRole, edc.isDoubleEntry());
        // find all item data
        ItemDataDAO iddao = new ItemDataDAO(sm.getDataSource());
        ArrayList itemData = iddao.findAllByEventCRFId(eventCRF.getId());
        request.setAttribute("items", itemData);
        String action = request.getParameter("action");
        if ("confirm".equalsIgnoreCase(action)) {
            if (!eventCRF.getStatus().equals(Status.DELETED) && !eventCRF.getStatus().equals(Status.AUTO_DELETED)) {
                addPageMessage(respage.getString("this_event_CRF_avilable_for_study") + " " + " " + respage.getString("please_contact_sysadmin_for_more_information"));
                request.setAttribute("id", new Integer(studySubId).toString());
                forwardPage(Page.VIEW_STUDY_SUBJECT_SERVLET);
                return;
            }
            request.setAttribute("displayEventCRF", dec);
            forwardPage(Page.RESTORE_EVENT_CRF);
        } else {
            logger.info("submit to restore the event CRF from study");
            eventCRF.setStatus(Status.AVAILABLE);
            eventCRF.setUpdater(ub);
            eventCRF.setUpdatedDate(new Date());
            ecdao.update(eventCRF);
            // restore all the item data
            for (int a = 0; a < itemData.size(); a++) {
                ItemDataBean item = (ItemDataBean) itemData.get(a);
                if (item.getStatus().equals(Status.AUTO_DELETED)) {
                    item.setStatus(Status.AVAILABLE);
                    item.setUpdater(ub);
                    item.setUpdatedDate(new Date());
                    iddao.update(item);
                }
            }
            String emailBody = respage.getString("the_event_CRF") + cb.getName() + " " + respage.getString("has_been_restored_to_the_event") + " " + event.getStudyEventDefinition().getName() + ".";
            addPageMessage(emailBody);
            sendEmail(emailBody);
            request.setAttribute("id", new Integer(studySubId).toString());
            forwardPage(Page.VIEW_STUDY_SUBJECT_SERVLET);
        }
    }
}