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Example 51 with ItemBean

use of org.akaza.openclinica.bean.submit.ItemBean in project OpenClinica by OpenClinica.

the class UrlRewriteServlet method getOpenClinicaResourceFromURL.

/**
     * Method to parse the request URL parameters and get the respective
     * database identifiers
     *
     * @param URLPath
     *            - example "S_CPCS/320999/SE_CPCS%5B1%5D/F_CPCS_1"
     * @param queryString
     *            - example
     *            "format=html&mode=view&tabId=1&exitTo=ViewStudySubject"
     * @return
     */
public OpenClinicaResource getOpenClinicaResourceFromURL(String URLPath) /*
                                                                            * ,
                                                                            * String
                                                                            * queryString
                                                                            */
{
    OpenClinicaResource openClinicaResource = new OpenClinicaResource();
    if ((null != URLPath) && (!URLPath.equals(""))) {
        if (URLPath.contains("/")) {
            String[] tokens = URLPath.split("/");
            if (tokens.length != 0) {
                String URLParamValue = "";
                StudyDAO stdao = new StudyDAO(getDataSource());
                StudySubjectDAO ssubdao = new StudySubjectDAO(getDataSource());
                StudyEventDefinitionDAO sedefdao = new StudyEventDefinitionDAO(getDataSource());
                CRFDAO crfdao = new CRFDAO(getDataSource());
                CRFVersionDAO crfvdao = new CRFVersionDAO(getDataSource());
                ItemDAO idao = new ItemDAO(getDataSource());
                ItemGroupDAO igdao = new ItemGroupDAO(getDataSource());
                StudyEventDAO sedao = new StudyEventDAO(getDataSource());
                StudyBean study = null;
                StudySubjectBean subject = null;
                StudyEventDefinitionBean sed = null;
                CRFBean c = null;
                CRFVersionBean cv = null;
                ItemBean item = null;
                ItemGroupBean ig = null;
                StudyEventBean studyEvent = null;
                Integer studySubjectId = 0;
                Integer eventDefId = 0;
                Integer eventRepeatKey = 0;
                for (int i = 0; i < tokens.length; i++) {
                    // when interpreting these request URL parameters, the
                    // assumption is that the position of
                    // each type of parameters will be fixed. Meaning, study
                    // OID is always going to be at the start
                    // followed by StudySubjectKey followed by study event
                    // definition OID followed by
                    // study event repeat key followed by form OID followed
                    // by item group OID followed by
                    // item group repeat key followed by item OID
                    // It can also be done based on the start of OID value
                    // (example study OID presently
                    // starts with 'S_' but we will have to change it if we
                    // change the method of generating
                    // oID values in future.
                    URLParamValue = tokens[i].trim();
                    //System.out.println("URLParamValue::"+URLParamValue);
                    logger.info("URLPAramValue::" + URLParamValue);
                    if ((null != URLParamValue) && (!URLParamValue.equals(""))) {
                        switch(i) {
                            case 0:
                                {
                                    // study OID
                                    study = stdao.findByOid(URLParamValue);
                                    //validate study OID
                                    if (study == null) {
                                        openClinicaResource.setInValid(true);
                                        openClinicaResource.getMessages().add(resexception.getString("invalid_study_oid"));
                                        return openClinicaResource;
                                    } else {
                                        openClinicaResource.setStudyOID(URLParamValue);
                                        if (null != study) {
                                            openClinicaResource.setStudyID(study.getId());
                                        }
                                    }
                                    break;
                                }
                            case 1:
                                {
                                    // StudySubjectKey
                                    subject = ssubdao.findByOidAndStudy(URLParamValue, study.getId());
                                    //validate subject OID
                                    if (subject == null) {
                                        openClinicaResource.setInValid(true);
                                        openClinicaResource.getMessages().add(resexception.getString("invalid_subject_oid"));
                                        return openClinicaResource;
                                    } else {
                                        openClinicaResource.setStudySubjectOID(URLParamValue);
                                        if (null != subject) {
                                            studySubjectId = subject.getId();
                                            openClinicaResource.setStudySubjectID(studySubjectId);
                                        }
                                    }
                                    break;
                                }
                            case 2:
                                {
                                    // study event definition OID
                                    // separate study event OID and study event
                                    // repeat key
                                    String seoid = "";
                                    String eventOrdinal = "";
                                    if (URLParamValue.contains("%5B") && URLParamValue.contains("%5D")) {
                                        seoid = URLParamValue.substring(0, URLParamValue.indexOf("%5B"));
                                        openClinicaResource.setStudyEventDefOID(seoid);
                                        eventOrdinal = URLParamValue.substring(URLParamValue.indexOf("%5B") + 3, URLParamValue.indexOf("%5D"));
                                    } else if (URLParamValue.contains("[") && URLParamValue.contains("]")) {
                                        seoid = URLParamValue.substring(0, URLParamValue.indexOf("["));
                                        logger.info("seoid" + seoid);
                                        openClinicaResource.setStudyEventDefOID(seoid);
                                        eventOrdinal = URLParamValue.substring(URLParamValue.indexOf("[") + 1, URLParamValue.indexOf("]"));
                                        logger.info("eventOrdinal::" + eventOrdinal);
                                    } else {
                                        //event ordinal not specified
                                        openClinicaResource.setInValid(true);
                                        openClinicaResource.getMessages().add(resexception.getString("event_ordinal_not_specified"));
                                        return openClinicaResource;
                                    }
                                    if ((null != seoid) && (null != study)) {
                                        sed = sedefdao.findByOidAndStudy(seoid, study.getId(), study.getParentStudyId());
                                        //validate study event oid
                                        if (null == sed) {
                                            openClinicaResource.setInValid(true);
                                            openClinicaResource.getMessages().add(resexception.getString("invalid_event_oid"));
                                            return openClinicaResource;
                                        } else {
                                            eventDefId = sed.getId();
                                            openClinicaResource.setStudyEventDefID(eventDefId);
                                        }
                                    }
                                    if (null != eventRepeatKey) {
                                        eventRepeatKey = Integer.parseInt(eventOrdinal.trim());
                                        //validate the event ordinal specified exists in database
                                        studyEvent = (StudyEventBean) sedao.findByStudySubjectIdAndDefinitionIdAndOrdinal(subject.getId(), sed.getId(), eventRepeatKey);
                                        //this method return new StudyEvent (not null) even if no studyEvent can be found
                                        if (null == studyEvent || studyEvent.getId() == 0) {
                                            openClinicaResource.setInValid(true);
                                            openClinicaResource.getMessages().add(resexception.getString("invalid_event_ordinal"));
                                            return openClinicaResource;
                                        } else {
                                            openClinicaResource.setStudyEventRepeatKey(eventRepeatKey);
                                        }
                                    }
                                    break;
                                }
                            case 3:
                                {
                                    // form OID
                                    openClinicaResource.setFormVersionOID(URLParamValue);
                                    //validate the crf version oid
                                    cv = crfvdao.findByOid(URLParamValue);
                                    if (cv == null) {
                                        openClinicaResource.setInValid(true);
                                        openClinicaResource.getMessages().add(resexception.getString("invalid_crf_oid"));
                                        return openClinicaResource;
                                    } else {
                                        openClinicaResource.setFormVersionID(cv.getId());
                                        //validate if crf is removed
                                        if (cv.getStatus().equals(Status.DELETED)) {
                                            openClinicaResource.setInValid(true);
                                            openClinicaResource.getMessages().add(resexception.getString("removed_crf"));
                                            return openClinicaResource;
                                        } else {
                                            if (null != study) {
                                                // cv =
                                                // crfvdao.findByCrfVersionOidAndStudy(URLParamValue,
                                                // study.getId());
                                                // if (null != cv) {
                                                // openClinicaResource.setFormVersionID(cv.getId());
                                                // openClinicaResource.setFormID(cv.getCrfId());
                                                // }
                                                HashMap studySubjectCRFDataDetails = sedao.getStudySubjectCRFData(study, studySubjectId, eventDefId, URLParamValue, eventRepeatKey);
                                                if ((null != studySubjectCRFDataDetails) && (studySubjectCRFDataDetails.size() != 0)) {
                                                    if (studySubjectCRFDataDetails.containsKey("event_crf_id")) {
                                                        openClinicaResource.setEventCrfId((Integer) studySubjectCRFDataDetails.get("event_crf_id"));
                                                    }
                                                    if (studySubjectCRFDataDetails.containsKey("event_definition_crf_id")) {
                                                        openClinicaResource.setEventDefinitionCrfId((Integer) studySubjectCRFDataDetails.get("event_definition_crf_id"));
                                                    }
                                                    if (studySubjectCRFDataDetails.containsKey("study_event_id")) {
                                                        openClinicaResource.setStudyEventId((Integer) studySubjectCRFDataDetails.get("study_event_id"));
                                                    }
                                                } else {
                                                    //no data was found in the database for the combination of parameters in the RESTful URL. There are 2 possible reasons:
                                                    //a. The data entry is not started yet for this event CRF. As of OpenClinica 3.1.3 we have not implemented the 
                                                    // RESTful URL functionality in this case.
                                                    //b. The form version OID entered in the URL could be different than the one used in the data entry
                                                    openClinicaResource.setInValid(true);
                                                    openClinicaResource.getMessages().add(resexception.getString("either_no_data_for_crf_or_data_entry_not_started"));
                                                    return openClinicaResource;
                                                }
                                            }
                                        }
                                    }
                                    break;
                                }
                            case 4:
                                {
                                    // item group OID
                                    // separate item group OID and item group
                                    // repeat key
                                    String igoid = "";
                                    String igRepeatKey = "";
                                    if (URLParamValue.contains("[")) {
                                        igoid = URLParamValue.substring(1, URLParamValue.indexOf("["));
                                        igRepeatKey = URLParamValue.substring(URLParamValue.indexOf("["), URLParamValue.indexOf("}]"));
                                    }
                                    if ((null != igoid) && (null != cv)) {
                                        ig = igdao.findByOidAndCrf(URLParamValue, cv.getCrfId());
                                        if (null != ig) {
                                            openClinicaResource.setItemGroupID(ig.getId());
                                        }
                                    }
                                    if (null != igRepeatKey) {
                                        openClinicaResource.setItemGroupRepeatKey(Integer.parseInt(igRepeatKey));
                                    }
                                    break;
                                }
                            case 5:
                                {
                                    // item = idao.find
                                    break;
                                }
                        }
                    // switch end
                    }
                }
            }
        }
    }
    return openClinicaResource;
}
Also used : CRFDAO(org.akaza.openclinica.dao.admin.CRFDAO) ItemBean(org.akaza.openclinica.bean.submit.ItemBean) CRFVersionDAO(org.akaza.openclinica.dao.submit.CRFVersionDAO) ItemDAO(org.akaza.openclinica.dao.submit.ItemDAO) HashMap(java.util.HashMap) StudyBean(org.akaza.openclinica.bean.managestudy.StudyBean) ItemGroupDAO(org.akaza.openclinica.dao.submit.ItemGroupDAO) StudyEventDefinitionBean(org.akaza.openclinica.bean.managestudy.StudyEventDefinitionBean) StudyEventBean(org.akaza.openclinica.bean.managestudy.StudyEventBean) StudySubjectDAO(org.akaza.openclinica.dao.managestudy.StudySubjectDAO) CRFBean(org.akaza.openclinica.bean.admin.CRFBean) StudyEventDefinitionDAO(org.akaza.openclinica.dao.managestudy.StudyEventDefinitionDAO) StudySubjectBean(org.akaza.openclinica.bean.managestudy.StudySubjectBean) StudyEventDAO(org.akaza.openclinica.dao.managestudy.StudyEventDAO) CRFVersionBean(org.akaza.openclinica.bean.submit.CRFVersionBean) ItemGroupBean(org.akaza.openclinica.bean.submit.ItemGroupBean) StudyDAO(org.akaza.openclinica.dao.managestudy.StudyDAO)

Example 52 with ItemBean

use of org.akaza.openclinica.bean.submit.ItemBean in project OpenClinica by OpenClinica.

the class VerifyImportedCRFDataServlet method processRequest.

@Override
@SuppressWarnings(value = "unchecked")
public void processRequest() throws Exception {
    ItemDataDAO itemDataDao = new ItemDataDAO(sm.getDataSource());
    itemDataDao.setFormatDates(false);
    EventCRFDAO eventCrfDao = new EventCRFDAO(sm.getDataSource());
    CrfBusinessLogicHelper crfBusinessLogicHelper = new CrfBusinessLogicHelper(sm.getDataSource());
    String action = request.getParameter("action");
    FormProcessor fp = new FormProcessor(request);
    // checks which module the requests are from
    String module = fp.getString(MODULE);
    request.setAttribute(MODULE, module);
    resetPanel();
    panel.setStudyInfoShown(false);
    panel.setOrderedData(true);
    setToPanel(resword.getString("create_CRF"), respage.getString("br_create_new_CRF_entering"));
    setToPanel(resword.getString("create_CRF_version"), respage.getString("br_create_new_CRF_uploading"));
    setToPanel(resword.getString("revise_CRF_version"), respage.getString("br_if_you_owner_CRF_version"));
    setToPanel(resword.getString("CRF_spreadsheet_template"), respage.getString("br_download_blank_CRF_spreadsheet_from"));
    setToPanel(resword.getString("example_CRF_br_spreadsheets"), respage.getString("br_download_example_CRF_instructions_from"));
    if ("confirm".equalsIgnoreCase(action)) {
        List<DisplayItemBeanWrapper> displayItemBeanWrappers = (List<DisplayItemBeanWrapper>) session.getAttribute("importedData");
        logger.info("Size of displayItemBeanWrappers : " + displayItemBeanWrappers.size());
        forwardPage(Page.VERIFY_IMPORT_CRF_DATA);
    }
    if ("save".equalsIgnoreCase(action)) {
        // setup ruleSets to run if applicable
        RuleSetServiceInterface ruleSetService = (RuleSetServiceInterface) SpringServletAccess.getApplicationContext(context).getBean("ruleSetService");
        List<ImportDataRuleRunnerContainer> containers = this.ruleRunSetup(sm.getDataSource(), currentStudy, ub, ruleSetService);
        List<DisplayItemBeanWrapper> displayItemBeanWrappers = (List<DisplayItemBeanWrapper>) session.getAttribute("importedData");
        // System.out.println("Size of displayItemBeanWrappers : " +
        // displayItemBeanWrappers.size());
        HashMap<Integer, String> importedCRFStatuses = (HashMap<Integer, String>) session.getAttribute("importedCRFStatuses");
        for (DisplayItemBeanWrapper wrapper : displayItemBeanWrappers) {
            boolean resetSDV = false;
            int eventCrfBeanId = -1;
            EventCRFBean eventCrfBean = new EventCRFBean();
            // TODO : tom , the wrapper object has all the necessary data -
            // as you see we check the
            // is to see if this data is Savable if it is then we go ahead
            // and save it. if not we discard.
            // So the change needs to happen here , instead of discarding we
            // need to file discrepancy notes
            // and save the data. If you look in the
            // Page.VERIFY_IMPORT_CRF_DATA jsp file you can see how I am
            // pulling the errors. and use that in the same way.
            logger.info("right before we check to make sure it is savable: " + wrapper.isSavable());
            if (wrapper.isSavable()) {
                ArrayList<Integer> eventCrfInts = new ArrayList<Integer>();
                // wrapper.getValidationErrors().toString());
                for (DisplayItemBean displayItemBean : wrapper.getDisplayItemBeans()) {
                    eventCrfBeanId = displayItemBean.getData().getEventCRFId();
                    eventCrfBean = (EventCRFBean) eventCrfDao.findByPK(eventCrfBeanId);
                    logger.info("found value here: " + displayItemBean.getData().getValue());
                    logger.info("found status here: " + eventCrfBean.getStatus().getName());
                    // System.out.println("found event crf bean name here: "
                    // +
                    // eventCrfBean.getEventName()+" id "+eventCrfBean.getId
                    // ());
                    // SO, items can be created in a wrapper which is set to
                    // overwrite
                    // we get around this by checking the bean first, to
                    // make sure it's not null
                    ItemDataBean itemDataBean = new ItemDataBean();
                    itemDataBean = itemDataDao.findByItemIdAndEventCRFIdAndOrdinal(displayItemBean.getItem().getId(), eventCrfBean.getId(), displayItemBean.getData().getOrdinal());
                    if (wrapper.isOverwrite() && itemDataBean.getStatus() != null) {
                        if (!itemDataBean.getValue().equals(displayItemBean.getData().getValue()))
                            resetSDV = true;
                        logger.info("just tried to find item data bean on item name " + displayItemBean.getItem().getName());
                        itemDataBean.setUpdatedDate(new Date());
                        itemDataBean.setUpdater(ub);
                        itemDataBean.setValue(displayItemBean.getData().getValue());
                        // set status?
                        itemDataDao.update(itemDataBean);
                        logger.info("updated: " + itemDataBean.getItemId());
                        // need to set pk here in order to create dn
                        displayItemBean.getData().setId(itemDataBean.getId());
                    } else {
                        resetSDV = true;
                        itemDataDao.create(displayItemBean.getData());
                        logger.info("created: " + displayItemBean.getData().getItemId() + "event CRF ID = " + eventCrfBean.getId() + "CRF VERSION ID =" + eventCrfBean.getCRFVersionId());
                        // does this dao function work for repeating
                        // events/groups?
                        // ItemDataBean itemDataBean =
                        // itemDataDao.findByEventCRFIdAndItemName(
                        // eventCrfBean,
                        // displayItemBean.getItem().getName());
                        ItemDataBean itemDataBean2 = itemDataDao.findByItemIdAndEventCRFIdAndOrdinal(displayItemBean.getItem().getId(), eventCrfBean.getId(), displayItemBean.getData().getOrdinal());
                        logger.info("found: id " + itemDataBean2.getId() + " name " + itemDataBean2.getName());
                        displayItemBean.getData().setId(itemDataBean2.getId());
                    }
                    // logger.info("created item data bean:
                    // "+displayItemBean.getData().getId());
                    // logger.info("created:
                    // "+displayItemBean.getData().getName());
                    // logger.info("continued:
                    // "+displayItemBean.getData().getItemId());
                    ItemDAO idao = new ItemDAO(sm.getDataSource());
                    ItemBean ibean = (ItemBean) idao.findByPK(displayItemBean.getData().getItemId());
                    // logger.info("continued2: getName " +
                    // ibean.getName());
                    // System.out.println("*** checking for validation errors: "
                    // + ibean.getName());
                    String itemOid = displayItemBean.getItem().getOid() + "_" + wrapper.getStudyEventRepeatKey() + "_" + displayItemBean.getData().getOrdinal() + "_" + wrapper.getStudySubjectOid();
                    if (wrapper.getValidationErrors().containsKey(itemOid)) {
                        ArrayList messageList = (ArrayList) wrapper.getValidationErrors().get(itemOid);
                        // could it be more than one? tbh 08/2008
                        for (int iter = 0; iter < messageList.size(); iter++) {
                            String message = (String) messageList.get(iter);
                            DiscrepancyNoteBean parentDn = ImportSpringJob.createDiscrepancyNote(ibean, message, eventCrfBean, displayItemBean, null, ub, sm.getDataSource(), currentStudy);
                            ImportSpringJob.createDiscrepancyNote(ibean, message, eventCrfBean, displayItemBean, parentDn.getId(), ub, sm.getDataSource(), currentStudy);
                        // System.out.println("*** created disc note with message: "
                        // + message);
                        // displayItemBean);
                        }
                    }
                    // "+displayItemBean.getDbData().getName());
                    if (!eventCrfInts.contains(new Integer(eventCrfBean.getId()))) {
                        String eventCRFStatus = importedCRFStatuses.get(new Integer(eventCrfBean.getId()));
                        if (eventCRFStatus != null && eventCRFStatus.equals(DataEntryStage.INITIAL_DATA_ENTRY.getName()) && eventCrfBean.getStatus().isAvailable()) {
                            crfBusinessLogicHelper.markCRFStarted(eventCrfBean, ub);
                        } else {
                            crfBusinessLogicHelper.markCRFComplete(eventCrfBean, ub);
                        }
                        eventCrfInts.add(new Integer(eventCrfBean.getId()));
                    }
                }
                // Reset the SDV status if item data has been changed or added
                if (eventCrfBean != null && resetSDV)
                    eventCrfDao.setSDVStatus(false, ub.getId(), eventCrfBean.getId());
            // end of item datas, tbh
            // crfBusinessLogicHelper.markCRFComplete(eventCrfBean, ub);
            // System .out.println("*** just updated event crf bean: "+
            // eventCrfBean.getId());
            // need to update the study event status as well, tbh
            // crfBusinessLogicHelper.updateStudyEvent(eventCrfBean,
            // ub);
            // above should do it for us, tbh 08/2008
            }
        }
        addPageMessage(respage.getString("data_has_been_successfully_import"));
        addPageMessage(this.ruleActionWarnings(this.runRules(currentStudy, ub, containers, ruleSetService, ExecutionMode.SAVE)));
        // forwardPage(Page.SUBMIT_DATA_SERVLET);
        forwardPage(Page.LIST_STUDY_SUBJECTS_SERVLET);
    // replaced tbh, 06/2009
    }
}
Also used : DisplayItemBean(org.akaza.openclinica.bean.submit.DisplayItemBean) ItemBean(org.akaza.openclinica.bean.submit.ItemBean) HashMap(java.util.HashMap) ItemDAO(org.akaza.openclinica.dao.submit.ItemDAO) ArrayList(java.util.ArrayList) ImportDataRuleRunnerContainer(org.akaza.openclinica.logic.rulerunner.ImportDataRuleRunnerContainer) ItemDataDAO(org.akaza.openclinica.dao.submit.ItemDataDAO) RuleSetServiceInterface(org.akaza.openclinica.service.rule.RuleSetServiceInterface) EventCRFBean(org.akaza.openclinica.bean.submit.EventCRFBean) ItemDataBean(org.akaza.openclinica.bean.submit.ItemDataBean) DisplayItemBean(org.akaza.openclinica.bean.submit.DisplayItemBean) CrfBusinessLogicHelper(org.akaza.openclinica.web.job.CrfBusinessLogicHelper) ArrayList(java.util.ArrayList) List(java.util.List) EventCRFDAO(org.akaza.openclinica.dao.submit.EventCRFDAO) DisplayItemBeanWrapper(org.akaza.openclinica.bean.submit.DisplayItemBeanWrapper) FormProcessor(org.akaza.openclinica.control.form.FormProcessor) Date(java.util.Date) DiscrepancyNoteBean(org.akaza.openclinica.bean.managestudy.DiscrepancyNoteBean)

Example 53 with ItemBean

use of org.akaza.openclinica.bean.submit.ItemBean in project OpenClinica by OpenClinica.

the class CellFactoryPrintDecorator method addUnits.

public Element addUnits(Element tdCell, DisplayItemBean displayBean) {
    if (displayBean == null) {
        return tdCell;
    }
    ItemBean itemBean = displayBean.getItem();
    if (itemBean == null) {
        return tdCell;
    }
    StringBuilder units = new StringBuilder(displayBean.getItem().getUnits());
    if (units.length() < 1) {
        return tdCell;
    }
    Element spanElement = new Element("span");
    spanElement.setAttribute("style", "float:left;clear:both");
    // surround units with parentheses
    units = units.insert(0, "(");
    units = units.append(")");
    spanElement.addContent(" " + units.toString());
    tdCell.addContent(spanElement);
    return tdCell;
}
Also used : DisplayItemBean(org.akaza.openclinica.bean.submit.DisplayItemBean) ItemBean(org.akaza.openclinica.bean.submit.ItemBean) Element(org.jdom.Element)

Example 54 with ItemBean

use of org.akaza.openclinica.bean.submit.ItemBean in project OpenClinica by OpenClinica.

the class FormBeanUtil method createDisplaySectionWithItemGroups.

/**
     * Create a DisplaySectionBean with a list of ItemGroupBeans. NOTE:
     * unGrouped Items are not included
     * 
     * @param study
     *            The StudyBean
     * @param sectionId
     *            The Section ID associated with the Items, which end up
     *            providing the content of the tables.
     * @param crfVersionId
     *            The CRF version ID associated with the Items.
     * @param studyEventId
     *            The Study Event ID associated with the CRF Version ID.
     * @param sm
     *            A SessionManager, from which DataSources are acquired for the
     *            DAO objects.
     * @return A DisplaySectionBean.
     */
public DisplaySectionBean createDisplaySectionWithItemGroups(StudyBean study, int sectionId, EventCRFBean eventCrfBean, int studyEventId, SessionManager sm, int eventDefinitionCRFId, ServletContext context) {
    DisplaySectionBean dBean = new DisplaySectionBean();
    ItemGroupDAO formGroupDAO = new ItemGroupDAO(sm.getDataSource());
    ItemGroupMetadataDAO igMetaDAO = new ItemGroupMetadataDAO(sm.getDataSource());
    ItemDAO itemDao = new ItemDAO(sm.getDataSource());
    ItemFormMetadataDAO metaDao = new ItemFormMetadataDAO(sm.getDataSource());
    List<ItemGroupBean> arrList = formGroupDAO.findLegitGroupBySectionId(sectionId);
    // all items associated with the section, including those not in a group
    List<ItemFormMetadataBean> allMetas = new ArrayList<ItemFormMetadataBean>();
    try {
        allMetas = metaDao.findAllBySectionId(sectionId);
    } catch (OpenClinicaException oce) {
        logger.info("oce.getOpenClinicaMessage() = " + oce.getOpenClinicaMessage());
    }
    // Collections.sort(allMetas);
    if (arrList.isEmpty())
        return dBean;
    // Find out whether there are any checkboxes/radios/select elements
    // and if so, get any null values
    // associated with them
    List<String> nullValuesList = new ArrayList<String>();
    boolean itemsHaveChecksRadios = itemsIncludeChecksRadiosSelects(allMetas);
    // "+eventDefinitionCRFId);
    if (eventDefinitionCRFId <= 0) {
        EventDefinitionCRFDAO edcdao = new EventDefinitionCRFDAO(sm.getDataSource());
        EventDefinitionCRFBean edcBean = edcdao.findByStudyEventIdAndCRFVersionId(study, studyEventId, eventCrfBean.getCRFVersionId());
        eventDefinitionCRFId = edcBean.getId();
    }
    // "+eventDefinitionCRFId);
    if (itemsHaveChecksRadios && eventDefinitionCRFId > 0) {
        // method returns null values as a List<String>
        nullValuesList = this.getNullValuesByEventCRFDefId(eventDefinitionCRFId, sm.getDataSource());
    }
    // Get the items associated with each group
    List<ItemBean> itBeans;
    List<DisplayItemBean> displayItems;
    List<DisplayItemGroupBean> displayFormBeans = new ArrayList<DisplayItemGroupBean>();
    DisplayItemGroupBean displayItemGBean;
    for (ItemGroupBean itemGroup : arrList) {
        itBeans = itemDao.findAllItemsByGroupId(itemGroup.getId(), eventCrfBean.getCRFVersionId());
        List<ItemGroupMetadataBean> metadata = igMetaDAO.findMetaByGroupAndSection(itemGroup.getId(), eventCrfBean.getCRFVersionId(), sectionId);
        if (!metadata.isEmpty()) {
            // for a given crf version, all the items in the same group
            // have the same group metadata
            // so we can get one of them and set metadata for the group
            ItemGroupMetadataBean meta = metadata.get(0);
            itemGroup.setMeta(meta);
        }
        // include arrayList parameter until I determine difference in
        // classes
        displayItems = getDisplayBeansFromItems(itBeans, sm.getDataSource(), eventCrfBean, sectionId, nullValuesList, context);
        displayItemGBean = this.createDisplayFormGroup(displayItems, itemGroup);
        displayFormBeans.add(displayItemGBean);
    }
    // We still have to sort these display item group beans on their
    // ItemGroupMetadataBean?
    // then number their ordinals accordingly
    Collections.sort(displayFormBeans, new Comparator<DisplayItemGroupBean>() {

        public int compare(DisplayItemGroupBean displayItemGroupBean, DisplayItemGroupBean displayItemGroupBean1) {
            return displayItemGroupBean.getGroupMetaBean().compareTo(displayItemGroupBean1.getGroupMetaBean());
        }
    });
    // Now provide the display item group beans with an ordinal
    int digOrdinal = 0;
    for (DisplayItemGroupBean digBean : displayFormBeans) {
        digBean.setOrdinal(++digOrdinal);
    }
    dBean.setDisplayFormGroups(displayFormBeans);
    return dBean;
}
Also used : DisplayItemBean(org.akaza.openclinica.bean.submit.DisplayItemBean) ItemBean(org.akaza.openclinica.bean.submit.ItemBean) ItemDAO(org.akaza.openclinica.dao.submit.ItemDAO) ItemGroupDAO(org.akaza.openclinica.dao.submit.ItemGroupDAO) ArrayList(java.util.ArrayList) OpenClinicaException(org.akaza.openclinica.exception.OpenClinicaException) ItemGroupMetadataBean(org.akaza.openclinica.bean.submit.ItemGroupMetadataBean) DisplayItemBean(org.akaza.openclinica.bean.submit.DisplayItemBean) ItemFormMetadataDAO(org.akaza.openclinica.dao.submit.ItemFormMetadataDAO) DisplayItemGroupBean(org.akaza.openclinica.bean.submit.DisplayItemGroupBean) EventDefinitionCRFDAO(org.akaza.openclinica.dao.managestudy.EventDefinitionCRFDAO) DisplaySectionBean(org.akaza.openclinica.bean.submit.DisplaySectionBean) ItemGroupMetadataDAO(org.akaza.openclinica.dao.submit.ItemGroupMetadataDAO) DisplayItemGroupBean(org.akaza.openclinica.bean.submit.DisplayItemGroupBean) ItemGroupBean(org.akaza.openclinica.bean.submit.ItemGroupBean) EventDefinitionCRFBean(org.akaza.openclinica.bean.managestudy.EventDefinitionCRFBean) ItemFormMetadataBean(org.akaza.openclinica.bean.submit.ItemFormMetadataBean)

Example 55 with ItemBean

use of org.akaza.openclinica.bean.submit.ItemBean in project OpenClinica by OpenClinica.

the class FormBeanUtil method getDisplayBeansFromItems.

public static List<DisplayItemBean> getDisplayBeansFromItems(List<ItemBean> itemBeans, DataSource dataSource, EventCRFBean eventCrfBean, int sectionId, EventDefinitionCRFBean edcb, int test, ServletContext context) {
    //int test is for method overloading. 
    List<DisplayItemBean> disBeans = new ArrayList<DisplayItemBean>();
    if (itemBeans == null || itemBeans.isEmpty())
        return disBeans;
    ItemFormMetadataDAO metaDao = new ItemFormMetadataDAO(dataSource);
    ItemDataDAO itemDataDao = new ItemDataDAO(dataSource);
    DisplayItemBean displayBean;
    ItemFormMetadataBean meta;
    for (ItemBean iBean : itemBeans) {
        displayBean = new DisplayItemBean();
        displayBean.setEventDefinitionCRF(edcb);
        meta = metaDao.findByItemIdAndCRFVersionId(iBean.getId(), eventCrfBean.getCRFVersionId());
        ItemDataBean itemDataBean = itemDataDao.findByItemIdAndEventCRFId(iBean.getId(), eventCrfBean.getId());
        if (meta.getSectionId() == sectionId) {
            displayBean.setItem(iBean);
            displayBean.setMetadata(runDynamicsCheck(meta, eventCrfBean, itemDataBean, context));
            displayBean.setData(itemDataBean);
            // << tbh 05/2010
            disBeans.add(displayBean);
        }
    }
    Collections.sort(disBeans);
    return disBeans;
}
Also used : DisplayItemBean(org.akaza.openclinica.bean.submit.DisplayItemBean) ItemBean(org.akaza.openclinica.bean.submit.ItemBean) ItemDataBean(org.akaza.openclinica.bean.submit.ItemDataBean) ArrayList(java.util.ArrayList) DisplayItemBean(org.akaza.openclinica.bean.submit.DisplayItemBean) ItemFormMetadataDAO(org.akaza.openclinica.dao.submit.ItemFormMetadataDAO) ItemDataDAO(org.akaza.openclinica.dao.submit.ItemDataDAO) ItemFormMetadataBean(org.akaza.openclinica.bean.submit.ItemFormMetadataBean)

Aggregations

ItemBean (org.akaza.openclinica.bean.submit.ItemBean)132 ArrayList (java.util.ArrayList)77 DisplayItemBean (org.akaza.openclinica.bean.submit.DisplayItemBean)56 HashMap (java.util.HashMap)50 ItemDAO (org.akaza.openclinica.dao.submit.ItemDAO)43 ItemDataBean (org.akaza.openclinica.bean.submit.ItemDataBean)42 ItemFormMetadataBean (org.akaza.openclinica.bean.submit.ItemFormMetadataBean)36 ItemGroupBean (org.akaza.openclinica.bean.submit.ItemGroupBean)26 EventCRFBean (org.akaza.openclinica.bean.submit.EventCRFBean)25 Iterator (java.util.Iterator)23 CRFBean (org.akaza.openclinica.bean.admin.CRFBean)22 ItemDataDAO (org.akaza.openclinica.dao.submit.ItemDataDAO)22 StudyEventDefinitionBean (org.akaza.openclinica.bean.managestudy.StudyEventDefinitionBean)21 ItemFormMetadataDAO (org.akaza.openclinica.dao.submit.ItemFormMetadataDAO)20 CRFVersionBean (org.akaza.openclinica.bean.submit.CRFVersionBean)15 SectionBean (org.akaza.openclinica.bean.submit.SectionBean)15 FormProcessor (org.akaza.openclinica.control.form.FormProcessor)15 StudyEventBean (org.akaza.openclinica.bean.managestudy.StudyEventBean)13 StudySubjectBean (org.akaza.openclinica.bean.managestudy.StudySubjectBean)13 DisplayItemGroupBean (org.akaza.openclinica.bean.submit.DisplayItemGroupBean)13