Examples with ItemBean org.akaza.openclinica.bean.submit.ItemBean used on opensource projects

Example 16 with ItemBean

use of org.akaza.openclinica.bean.submit.ItemBean in project OpenClinica by OpenClinica.

the class ScoreCalculator method redoCalculations.

/**
     * Re-do calculations if funcs include changed item(s) and funcs are not
     * included in the current section. If calculation can not sucessfully redo,
     * old value will be erased and "<erased>" will be saved in database. <br>
     * The parameter 'itemdata' might be overwritten.
     * 
     * @param itemGroupSizes
     * @param items
     * @param itemdata
     * @param oldItemdata
     * @param updatedData
     * @param sectionId
     * @return ArrayList<String> which records left_item_text of items who
     *         failed to be updated into database.
     */
public ArrayList<String> redoCalculations(HashMap<String, ItemBean> items, HashMap<String, String> itemdata, TreeSet<String> changedItems, HashMap<Integer, TreeSet<Integer>> itemOrdinals, int sectionId) {
    ArrayList<String> updateFailedItems = new ArrayList<String>();
    if (itemdata == null) {
        logger.error("In ScoreCalculator redoCalculations(), itemdata is empty!");
        errors.add("In ScoreCalculator redoCalculations(), 'itemdata' map is empty!");
        return updateFailedItems;
    }
    if (changedItems == null) {
        logger.error("In ScoreCalculator redoCalculations(), 'changeItems' set is empty!");
        errors.add("In ScoreCalculator redoCalculations(), 'changeItems' set is empty!");
        return updateFailedItems;
    }
    ItemFormMetadataDAO ifmdao = new ItemFormMetadataDAO(sm.getDataSource());
    ItemDAO idao = new ItemDAO(sm.getDataSource());
    ItemDataDAO iddao = new ItemDataDAO(sm.getDataSource());
    NumberFormat nf = NumberFormat.getInstance();
    Parser parser = new Parser(items, itemdata);
    try {
        // for calculation type
        List<ItemFormMetadataBean> derivedItemList = ifmdao.findAllByCRFVersionIdAndResponseTypeId(ecb.getCRFVersionId(), ResponseType.CALCULATION.getId());
        if (derivedItemList.size() > 0) {
            Collections.sort(derivedItemList);
            for (ItemFormMetadataBean ifmb : derivedItemList) {
                if (ifmb.getSectionId() != sectionId) {
                    ItemBean ib = (ItemBean) idao.findByPK(ifmb.getItemId());
                    ResponseOptionBean rob = (ResponseOptionBean) ifmb.getResponseSet().getOptions().get(0);
                    int groupsize = 1;
                    if (itemOrdinals.containsKey(ib.getId())) {
                        groupsize = itemOrdinals.get(ib.getId()).size();
                    }
                    String value = "";
                    ArrayList<ScoreToken> parsedExp = new ArrayList<ScoreToken>();
                    for (int i = 0; i < groupsize; ++i) {
                        ItemDataBean idb = iddao.findByItemIdAndEventCRFIdAndOrdinal(ifmb.getItemId(), ecb.getId(), i + 1);
                        // is there any changed item
                        Parser p = new Parser(items, itemdata);
                        parsedExp = parser.parseScoreTokens(rob.getValue());
                        if (p.isChanged(changedItems, parsedExp)) {
                            StringBuffer err = new StringBuffer();
                            parsedExp = parser.assignVariables(parsedExp, i + 1);
                            // before, set "<erased>"
                            if (parser.getErrors().length() > 0) {
                                err.append(parser.getErrors());
                                if (idb.isActive()) {
                                    idb.setValue("<erased>");
                                    idb.setStatus(Status.UNAVAILABLE);
                                    idb = (ItemDataBean) iddao.update(idb);
                                    if (!idb.isActive()) {
                                        String key = i + 1 > 1 ? ifmb.getLeftItemText() + "_" + (i + 1) : ifmb.getLeftItemText();
                                        updateFailedItems.add(key);
                                    }
                                }
                                parser.setErrors(new StringBuffer());
                            } else // otherwise do calculation
                            {
                                try {
                                    value = ScoreUtil.eval(parsedExp);
                                } catch (ScoreException se) {
                                    logger.error(se.getMessage());
                                }
                                String exp = rob.getValue();
                                exp = exp.replace("##", ",");
                                if (writeToDB(ib, ifmb, idb, exp, value, err)) {
                                    changedItems.add(ib.getName());
                                    itemdata.put(ib.getId() + "_" + (i + 1), idb.getValue());
                                } else {
                                    String key = i + 1 > 1 ? ifmb.getLeftItemText() + "_" + (i + 1) : ifmb.getLeftItemText();
                                    updateFailedItems.add(key);
                                }
                            }
                            if (err.length() > 0) {
                                String key = i + 1 > 1 ? ifmb.getLeftItemText() + "_" + (i + 1) : ifmb.getLeftItemText();
                                errors.add("Item " + key + " contains calculation errors: " + err.toString());
                            }
                        }
                    }
                }
            }
        }
        List<ItemFormMetadataBean> itemList = ifmdao.findAllByCRFVersionIdAndResponseTypeId(ecb.getCRFVersionId(), ResponseType.GROUP_CALCULATION.getId());
        if (itemList.size() > 0) {
            Collections.sort(itemList);
            for (ItemFormMetadataBean ifmb : itemList) {
                if (ifmb.getSectionId() != sectionId) {
                    ItemBean ib = (ItemBean) idao.findByPK(ifmb.getItemId());
                    ResponseOptionBean rob = (ResponseOptionBean) ifmb.getResponseSet().getOptions().get(0);
                    String value = "";
                    Parser p = new Parser(items, itemdata);
                    ArrayList<ScoreToken> parsedExp = parser.parseScoreTokens(rob.getValue());
                    if (p.isChanged(changedItems, parsedExp)) {
                        StringBuffer err = new StringBuffer();
                        parser.setErrors(err);
                        parsedExp = parser.assignVariables(parsedExp, itemOrdinals);
                        ItemDataBean idb = iddao.findByItemIdAndEventCRFIdAndOrdinal(ifmb.getItemId(), ecb.getId(), 1);
                        if (parser.getErrors().length() > 0) {
                            err.append(parser.getErrors());
                            if (idb.isActive()) {
                                idb.setValue("<erased>");
                                idb.setStatus(Status.UNAVAILABLE);
                                idb = (ItemDataBean) iddao.update(idb);
                                if (!idb.isActive()) {
                                    updateFailedItems.add(ifmb.getLeftItemText());
                                }
                            }
                        } else {
                            try {
                                value = ScoreUtil.eval(parsedExp);
                            } catch (ScoreException se) {
                                logger.error(se.getMessage());
                            }
                            String exp = rob.getValue();
                            exp = exp.replace("##", ",");
                            if (writeToDB(ib, ifmb, idb, exp, value, err)) {
                                changedItems.add(ib.getName());
                                itemdata.put(ib.getId() + "_" + idb.getOrdinal(), idb.getValue());
                            } else {
                                updateFailedItems.add(ifmb.getLeftItemText());
                            }
                        }
                        if (err.length() > 0) {
                            errors.add("Item " + ifmb.getLeftItemText() + " contains calculation errors: " + err.toString());
                        }
                    }
                }
            }
        }
    } catch (OpenClinicaException e) {
        logger.error(e.getMessage());
    }
    return updateFailedItems;
}

Example 17 with ItemBean

use of org.akaza.openclinica.bean.submit.ItemBean in project OpenClinica by OpenClinica.

the class RandomizeService method getExpressionValue.

private String getExpressionValue(String expr, EventCRFBean eventCrfBean, RuleSetBean ruleSet) {
    String expression = getExpressionService().constructFullExpressionIfPartialProvided(expr, ruleSet.getTarget().getValue());
    ItemDataBean itemData = null;
    if (expression != null && !expression.isEmpty()) {
        ItemBean itemBean = getExpressionService().getItemBeanFromExpression(expression);
        String itemGroupBOrdinal = getExpressionService().getGroupOrdninalCurated(expression);
        itemData = getItemDataDAO().findByItemIdAndEventCRFIdAndOrdinal(itemBean.getId(), eventCrfBean.getId(), itemGroupBOrdinal == "" ? 1 : Integer.valueOf(itemGroupBOrdinal));
    }
    return itemData.getValue();
}

Example 18 with ItemBean

use of org.akaza.openclinica.bean.submit.ItemBean in project OpenClinica by OpenClinica.

the class DynamicsMetadataService method getValue.

private String getValue(PropertyBean property, RuleSetBean ruleSet, EventCRFBean eventCrfBean, List<StratificationFactorBean> stratificationFactorBeans) {
    String value = null;
    if (property.getValue() != null && property.getValue().length() > 0) {
        logger.info("Value from property value is : {}", value);
        value = property.getValue();
    }
    if (property.getValueExpression() == null) {
        logger.info("There is no ValueExpression for property =" + property.getOid());
        if (stratificationFactorBeans != null)
            try {
                value = getRandomizeService().getRandomizationCode(eventCrfBean, stratificationFactorBeans, ruleSet);
            } catch (JSONException e) {
                // TODO Auto-generated catch block
                e.printStackTrace();
            }
    } else {
        String expression = getExpressionService().constructFullExpressionIfPartialProvided(property.getValueExpression().getValue(), ruleSet.getTarget().getValue());
        if (expression != null && !expression.isEmpty()) {
            ItemBean itemBean = getExpressionService().getItemBeanFromExpression(expression);
            String itemGroupBOrdinal = getExpressionService().getGroupOrdninalCurated(expression);
            ItemDataBean itemData = getItemDataDAO().findByItemIdAndEventCRFIdAndOrdinal(itemBean.getId(), eventCrfBean.getId(), itemGroupBOrdinal == "" ? 1 : Integer.valueOf(itemGroupBOrdinal));
            if (itemData.getId() == 0) {
                logger.info("Cannot get Value for ExpressionValue {}", expression);
            } else {
                value = itemData.getValue();
                logger.info("Value from ExpressionValue '{}'  is : {}", expression, value);
            }
        }
    }
    return value;
}

Example 19 with ItemBean

use of org.akaza.openclinica.bean.submit.ItemBean in project OpenClinica by OpenClinica.

the class DynamicsMetadataService method oneToMany.

private List<ItemDataBean> oneToMany(ItemDataBean itemDataBeanA, EventCRFBean eventCrfBeanA, ItemGroupMetadataBean itemGroupMetadataBeanA, ItemBean itemBeanB, ItemGroupBean itemGroupBeanB, ItemGroupMetadataBean itemGroupMetadataBeanB, EventCRFBean eventCrfBeanB, UserAccountBean ub) {
    List<ItemDataBean> itemDataBeans = new ArrayList<ItemDataBean>();
    Integer size = getItemDataDAO().getGroupSize(itemBeanB.getId(), eventCrfBeanB.getId());
    int maxOrdinal = getItemDataDAO().getMaxOrdinalForGroupByItemAndEventCrf(itemBeanB.getId(), eventCrfBeanB);
    if (size > 0 || maxOrdinal > 0) {
        itemDataBeans.addAll(getItemDataDAO().findAllByEventCRFIdAndItemId(eventCrfBeanB.getId(), itemBeanB.getId()));
    } else {
        List<ItemBean> items = getItemDAO().findAllItemsByGroupId(itemGroupBeanB.getId(), eventCrfBeanB.getCRFVersionId());
        for (int ordinal = 1 + maxOrdinal; ordinal <= itemGroupMetadataBeanB.getRepeatNum() + maxOrdinal; ordinal++) {
            for (ItemBean itemBeanX : items) {
                ItemDataBean oidBasedItemData = getItemData(itemBeanX, eventCrfBeanB, ordinal);
                if (oidBasedItemData.getId() == 0) {
                    oidBasedItemData = createItemData(oidBasedItemData, itemBeanX, ordinal, eventCrfBeanB, ub);
                }
                if (itemBeanX.getId() == itemBeanB.getId()) {
                    itemDataBeans.add(oidBasedItemData);
                }
            }
        }
    }
    return itemDataBeans;
}

Example 20 with ItemBean

use of org.akaza.openclinica.bean.submit.ItemBean in project OpenClinica by OpenClinica.

the class DynamicsMetadataService method hideNew.

public void hideNew(Integer itemDataId, List<PropertyBean> properties, UserAccountBean ub, RuleSetBean ruleSet) {
    ItemDataBean itemDataBeanA = (ItemDataBean) getItemDataDAO().findByPK(itemDataId);
    EventCRFBean eventCrfBeanA = (EventCRFBean) getEventCRFDAO().findByPK(itemDataBeanA.getEventCRFId());
    ItemGroupMetadataBean itemGroupMetadataBeanA = (ItemGroupMetadataBean) getItemGroupMetadataDAO().findByItemAndCrfVersion(itemDataBeanA.getItemId(), eventCrfBeanA.getCRFVersionId());
    Boolean isGroupARepeating = isGroupRepeating(itemGroupMetadataBeanA);
    String itemGroupAOrdinal = getExpressionService().getGroupOrdninalCurated(ruleSet.getTarget().getValue());
    for (PropertyBean propertyBean : properties) {
        String oid = propertyBean.getOid();
        ItemOrItemGroupHolder itemOrItemGroup = getItemOrItemGroup(oid);
        // OID is an item
        if (itemOrItemGroup.getItemBean() != null) {
            String expression = getExpressionService().constructFullExpressionIfPartialProvided(propertyBean.getOid(), ruleSet.getTarget().getValue());
            ItemBean itemBeanB = getExpressionService().getItemBeanFromExpression(expression);
            ItemGroupBean itemGroupBeanB = getExpressionService().getItemGroupExpression(expression);
            EventCRFBean eventCrfBeanB = eventCrfBeanA;
            ItemGroupMetadataBean itemGroupMetadataBeanB = (ItemGroupMetadataBean) getItemGroupMetadataDAO().findByItemAndCrfVersion(itemBeanB.getId(), eventCrfBeanB.getCRFVersionId());
            Boolean isGroupBRepeating = isGroupRepeating(itemGroupMetadataBeanB);
            String itemGroupBOrdinal = getExpressionService().getGroupOrdninalCurated(expression);
            List<ItemDataBean> itemDataBeans = new ArrayList<ItemDataBean>();
            // If A and B are both non repeating groups
            if (!isGroupARepeating && !isGroupBRepeating) {
                ItemDataBean oidBasedItemData = oneToOne(itemDataBeanA, eventCrfBeanA, itemGroupMetadataBeanA, itemBeanB, itemGroupMetadataBeanB, eventCrfBeanB, ub, 1);
                itemDataBeans.add(oidBasedItemData);
            }
            // If A is not repeating group & B is a repeating group with no index selected
            if (!isGroupARepeating && isGroupBRepeating && itemGroupBOrdinal.equals("")) {
                List<ItemDataBean> oidBasedItemDatas = oneToMany(itemDataBeanA, eventCrfBeanA, itemGroupMetadataBeanA, itemBeanB, itemGroupBeanB, itemGroupMetadataBeanB, eventCrfBeanB, ub);
                itemDataBeans.addAll(oidBasedItemDatas);
            }
            // If A is not repeating group & B is a repeating group with index selected
            if (!isGroupARepeating && isGroupBRepeating && !itemGroupBOrdinal.equals("")) {
                ItemDataBean oidBasedItemData = oneToIndexedMany(itemDataBeanA, eventCrfBeanA, itemGroupMetadataBeanA, itemBeanB, itemGroupBeanB, itemGroupMetadataBeanB, eventCrfBeanB, ub, Integer.valueOf(itemGroupBOrdinal));
                itemDataBeans.add(oidBasedItemData);
            }
            // If A is repeating group with index & B is a repeating group with index selected
            if (isGroupARepeating && isGroupBRepeating && !itemGroupBOrdinal.equals("")) {
                ItemDataBean oidBasedItemData = oneToIndexedMany(itemDataBeanA, eventCrfBeanA, itemGroupMetadataBeanA, itemBeanB, itemGroupBeanB, itemGroupMetadataBeanB, eventCrfBeanB, ub, Integer.valueOf(itemGroupBOrdinal));
                itemDataBeans.add(oidBasedItemData);
            }
            // If A is repeating group with index & B is a repeating group with no index selected
            if (isGroupARepeating && isGroupBRepeating && itemGroupBOrdinal.equals("")) {
                ItemDataBean oidBasedItemData = oneToIndexedMany(itemDataBeanA, eventCrfBeanA, itemGroupMetadataBeanA, itemBeanB, itemGroupBeanB, itemGroupMetadataBeanB, eventCrfBeanB, ub, Integer.valueOf(itemGroupAOrdinal));
                itemDataBeans.add(oidBasedItemData);
            }
            for (ItemDataBean oidBasedItemData : itemDataBeans) {
                ItemFormMetadataBean itemFormMetadataBean = getItemFormMetadataDAO().findByItemIdAndCRFVersionId(itemOrItemGroup.getItemBean().getId(), eventCrfBeanA.getCRFVersionId());
                DynamicsItemFormMetadataBean dynamicsMetadataBean = getDynamicsItemFormMetadataBean(itemFormMetadataBean, eventCrfBeanA, oidBasedItemData);
                if (dynamicsMetadataBean == null && oidBasedItemData.getValue().equals("")) {
                    hideNewItem(itemFormMetadataBean, eventCrfBeanA, oidBasedItemData);
                } else if (dynamicsMetadataBean != null && dynamicsMetadataBean.isShowItem() && oidBasedItemData.getValue().equals("")) {
                    // tbh #5287: add an additional check here to see if it should be hidden
                    dynamicsMetadataBean.setShowItem(false);
                    getDynamicsItemFormMetadataDao().saveOrUpdate(dynamicsMetadataBean);
                }
            }
        } else // OID is a group
        {
            // ItemGroupBean itemGroupBean = itemOrItemGroup.getItemGroupBean();
            // below taken from showNew and reversed, tbh 07/2010
            logger.debug("found item group id 1 " + oid);
            ItemGroupBean itemGroupBean = itemOrItemGroup.getItemGroupBean();
            ArrayList sectionBeans = getSectionDAO().findAllByCRFVersionId(eventCrfBeanA.getCRFVersionId());
            for (int i = 0; i < sectionBeans.size(); i++) {
                SectionBean sectionBean = (SectionBean) sectionBeans.get(i);
                // System.out.println("found section " + sectionBean.getId());
                List<ItemGroupMetadataBean> itemGroupMetadataBeans = getItemGroupMetadataDAO().findMetaByGroupAndSection(itemGroupBean.getId(), eventCrfBeanA.getCRFVersionId(), sectionBean.getId());
                for (ItemGroupMetadataBean itemGroupMetadataBean : itemGroupMetadataBeans) {
                    if (itemGroupMetadataBean.getItemGroupId() == itemGroupBean.getId()) {
                        // System.out.println("found item group id 2 " + oid);
                        DynamicsItemGroupMetadataBean dynamicsGroupBean = getDynamicsItemGroupMetadataBean(itemGroupMetadataBean, eventCrfBeanA);
                        if (dynamicsGroupBean == null) {
                            hideGroup(itemGroupMetadataBean, eventCrfBeanA);
                        } else if (dynamicsGroupBean != null && !dynamicsGroupBean.isShowGroup()) {
                            dynamicsGroupBean.setShowGroup(false);
                            getDynamicsItemGroupMetadataDao().saveOrUpdate(dynamicsGroupBean);
                        // TODO is below required in hide?
                        } else if (eventCrfBeanA.getStage().equals(DataEntryStage.DOUBLE_DATA_ENTRY)) {
                            //setVersion(1); // version 1 = passed DDE
                            dynamicsGroupBean.setPassedDde(1);
                            getDynamicsItemGroupMetadataDao().saveOrUpdate(dynamicsGroupBean);
                        }
                    }
                }
            }
        }
    }
// tbh #5287: reset the check to make sure items that have been shown are not re-hidden
// resetItemCounter();
}