Examples with SectionBean org.akaza.openclinica.bean.submit.SectionBean used on opensource projects

Example 46 with SectionBean

use of org.akaza.openclinica.bean.submit.SectionBean in project OpenClinica by OpenClinica.

the class StudyInfoPanel method setData.

/**
     * setData, the external function which creates data for the panel to
     * reflect.
     *
     * @param page
     * @param session
     * @param request
     */
public void setData(Page page, HttpSession session, HttpServletRequest request) {
    Locale locale = request.getLocale();
    resword = ResourceBundleProvider.getWordsBundle();
    local_sdf = new SimpleDateFormat(ResourceBundleProvider.getFormatBundle(locale).getString("date_format_string"));
    try {
        // defaults, can be reset by mistake by running through one page,
        // tbh
        this.setStudyInfoShown(true);
        this.setOrderedData(false);
        // try to avoid errors, tbh
        if (page.equals(Page.CREATE_DATASET_1)) {
            this.reset();
        // this.setData("Number of Steps", "5");
        } else if (page.equals(Page.CREATE_DATASET_2) || page.equals(Page.CREATE_DATASET_EVENT_ATTR) || page.equals(Page.CREATE_DATASET_SUB_ATTR) || page.equals(Page.CREATE_DATASET_CRF_ATTR) || page.equals(Page.CREATE_DATASET_GROUP_ATTR) || page.equals(Page.CREATE_DATASET_VIEW_SELECTED)) {
            HashMap eventlist = (HashMap) request.getAttribute("eventlist");
            ArrayList displayData = generateEventTree(eventlist);
            this.reset();
            this.setUserOrderedData(displayData);
            this.setStudyInfoShown(false);
            this.setOrderedData(true);
            this.setCreateDataset(true);
            this.setSubmitDataModule(false);
            this.setExtractData(false);
        } else if (page.equals(Page.CREATE_DATASET_3)) {
            this.reset();
            this.setStudyInfoShown(false);
            this.setOrderedData(false);
            this.setCreateDataset(true);
            this.setSubmitDataModule(false);
            this.setExtractData(false);
            DatasetBean dsb = (DatasetBean) session.getAttribute("newDataset");
            int ev_count = dsb.getItemIds().size();
            this.setData(resword.getString("items_selected"), new Integer(ev_count).toString());
        } else if (page.equals(Page.CREATE_DATASET_4)) {
            this.reset();
            this.setStudyInfoShown(false);
            this.setOrderedData(false);
            this.setCreateDataset(true);
            this.setSubmitDataModule(false);
            this.setExtractData(false);
            this.removeData(resword.getString("beginning_date"));
            this.removeData(resword.getString("ending_date"));
            DatasetBean dsb = (DatasetBean) session.getAttribute("newDataset");
            int ev_count = dsb.getItemIds().size();
            this.setData(resword.getString("items_selected"), new Integer(ev_count).toString());
            if ("01/01/1900".equals(english_sdf.format(dsb.getDateStart()))) {
                this.setData(resword.getString("beginning_date"), resword.getString("not_specified"));
            } else {
                this.setData(resword.getString("beginning_date"), local_sdf.format(dsb.getDateStart()));
            }
            if ("12/31/2100".equals(english_sdf.format(dsb.getDateEnd()))) {
                this.setData(resword.getString("ending_date"), resword.getString("not_specified"));
            } else {
                this.setData(resword.getString("ending_date"), local_sdf.format(dsb.getDateEnd()));
            }
            FilterBean fb = (FilterBean) session.getAttribute("newFilter");
            if (fb != null) {
                this.setData("Added Filter", fb.getName());
            }
        } else if (page.equals(Page.APPLY_FILTER)) {
            DatasetBean dsb = (DatasetBean) session.getAttribute("newDataset");
            this.setData(resword.getString("beginning_date"), local_sdf.format(dsb.getDateStart()));
            this.setData(resword.getString("ending_date"), local_sdf.format(dsb.getDateEnd()));
        } else if (page.equals(Page.CONFIRM_DATASET)) {
            this.reset();
            this.setStudyInfoShown(false);
            this.setOrderedData(false);
            this.setCreateDataset(true);
            this.setSubmitDataModule(false);
            this.setExtractData(false);
            DatasetBean dsb = (DatasetBean) session.getAttribute("newDataset");
            this.setData(resword.getString("dataset_name"), dsb.getName());
            this.setData(resword.getString("dataset_description"), dsb.getDescription());
            int ev_count = dsb.getItemIds().size();
            this.setData(resword.getString("items_selected"), new Integer(ev_count).toString());
            if ("01/01/1900".equals(english_sdf.format(dsb.getDateStart()))) {
                this.setData(resword.getString("beginning_date"), resword.getString("not_specified"));
            } else {
                this.setData(resword.getString("beginning_date"), local_sdf.format(dsb.getDateStart()));
            }
            if ("12/31/2100".equals(english_sdf.format(dsb.getDateEnd()))) {
                this.setData(resword.getString("ending_date"), resword.getString("not_specified"));
            } else {
                this.setData(resword.getString("ending_date"), local_sdf.format(dsb.getDateEnd()));
            }
            FilterBean fb = (FilterBean) session.getAttribute("newFilter");
            if (fb != null) {
                this.setData(resword.getString("added_filter"), fb.getName());
            }
        } else if (page.equals(Page.CREATE_FILTER_SCREEN_3_1)) {
            CRFVersionBean cvBean = (CRFVersionBean) session.getAttribute("cvBean");
            this.setData(resword.getString("CRF_version_selected"), cvBean.getName());
        } else if (page.equals(Page.CREATE_FILTER_SCREEN_3_2)) {
            SectionBean secBean = (SectionBean) session.getAttribute("secBean");
            this.setData(resword.getString("section_selected"), secBean.getName());
            Collection metadatas = (Collection) request.getAttribute("metadatas");
            this.setData(resword.getString("number_of_questions"), new Integer(metadatas.size()).toString());
        } else if (page.equals(Page.CREATE_FILTER_SCREEN_4)) {
        } else if (page.equals(Page.CREATE_FILTER_SCREEN_5)) {
        // blank here to prevent data reset, tbh
        } else if (page.equals(Page.ADMIN_SYSTEM)) {
        // blank here , info set in servlet itself
        } else if (page.equals(Page.VIEW_STUDY_SUBJECT) || page.equals(Page.LIST_EVENTS_FOR_SUBJECT)) {
            // special case, unlocks study name, subject name, and
            // visits
            // TODO set all this up, tbh
            /*
                 * set up the side info panel to create the following upon entry
                 * from the ViewStudyServlet Study X Subject Y StudyEventDef Z1
                 * StudyEventDef Z2 <status-tag> CRF A1 <status-tag> CRF A2 Z1
                 * should be collapsible/expandible, etc.
                 *
                 * We can pull things from the session and the request:
                 */
            /*
                 * StudyBean study = (StudyBean) request.getAttribute("study");
                 * StudySubjectBean studySubject = (StudySubjectBean)
                 * request.getAttribute("studySub"); EntityBeanTable table =
                 * (EntityBeanTable) request.getAttribute("table"); EventCRFBean
                 * ecb = (EventCRFBean)request.getAttribute("eventCRF");
                 * this.reset(); ArrayList rows = table.getRows(); ArrayList
                 * beans = DisplayStudyEventBean.generateBeansFromRows(rows);
                 *
                 *
                 * addStudyEventTree(study, studySubject, beans, ecb);
                 */
            // this.setIconInfoShown(false);
            // this.setManageSubject(true);
            this.reset();
            this.setStudyInfoShown(true);
            this.setOrderedData(true);
            this.setExtractData(false);
            this.setSubmitDataModule(false);
            this.setCreateDataset(false);
            this.setIconInfoShown(false);
            this.setManageSubject(true);
            request.setAttribute("showDDEIcon", Boolean.TRUE);
        } else if (page.equals(Page.ENTER_DATA_FOR_STUDY_EVENT) || page.equals(Page.ENTER_DATA_FOR_STUDY_EVENT_SERVLET)) {
            StudyBean study = (StudyBean) session.getAttribute("study");
            StudySubjectBean studySubject = (StudySubjectBean) request.getAttribute("studySubject");
            ArrayList beans = (ArrayList) request.getAttribute("beans");
            EventCRFBean ecb = (EventCRFBean) request.getAttribute("eventCRF");
            this.reset();
            addStudyEventTree(study, studySubject, beans, ecb, true);
            this.setStudyInfoShown(false);
            this.setOrderedData(true);
            this.setSubmitDataModule(true);
            this.setExtractData(false);
            this.setCreateDataset(false);
            this.setIconInfoShown(false);
        } else if (page.equals(Page.INTERVIEWER) || page.equals(Page.TABLE_OF_CONTENTS) || page.equals(Page.TABLE_OF_CONTENTS_SERVLET) || page.equals(Page.INITIAL_DATA_ENTRY) || page.equals(Page.INITIAL_DATA_ENTRY_SERVLET) || page.equals(Page.DOUBLE_DATA_ENTRY) || page.equals(Page.DOUBLE_DATA_ENTRY_SERVLET) || page.equals(Page.ADMIN_EDIT) || page.equals(Page.ADMIN_EDIT_SERVLET)) {
            /*
                 * pages designed to also follow the above format; check to see
                 * if they are in the session already, and does not refresh.
                 * TODO refine and test
                 */
            StudyBean study = (StudyBean) session.getAttribute("study");
            StudySubjectBean studySubject = (StudySubjectBean) request.getAttribute("studySubject");
            ArrayList beans = (ArrayList) request.getAttribute("beans");
            EventCRFBean ecb = (EventCRFBean) request.getAttribute("eventCRF");
            this.reset();
            addStudyEventTree(study, studySubject, beans, ecb, false);
            this.setStudyInfoShown(false);
            this.setOrderedData(true);
            this.setSubmitDataModule(true);
            this.setExtractData(false);
            this.setCreateDataset(false);
            this.setIconInfoShown(true);
        } else if (page.equals(Page.EDIT_DATASET)) {
            this.reset();
            // HashMap eventlist = (HashMap)
            // request.getAttribute("eventlist");
            HashMap eventlist = (LinkedHashMap) session.getAttribute("eventsForCreateDataset");
            ArrayList displayData = generateEventTree(eventlist);
            this.setCreateDataset(true);
            this.setOrderedData(true);
            this.setUserOrderedData(displayData);
            this.setStudyInfoShown(true);
            this.setSubmitDataModule(false);
            this.setExtractData(false);
            DatasetBean dsb = (DatasetBean) request.getAttribute("dataset");
            this.setData(resword.getString("dataset_name"), dsb.getName());
            this.setData(resword.getString("date_created"), local_sdf.format(dsb.getCreatedDate()));
            this.setData(resword.getString("dataset_owner"), dsb.getOwner().getName());
            this.setData(resword.getString("date_last_run"), local_sdf.format(dsb.getDateLastRun()));
        } else if (page.equals(Page.EXPORT_DATASETS)) {
            this.setCreateDataset(false);
        } else if (page.equals(Page.GENERATE_DATASET_HTML)) {
            DatasetBean db = (DatasetBean) request.getAttribute("dataset");
            ExtractBean exbean = (ExtractBean) request.getAttribute("extractBean");
            this.reset();
            ArrayList displayData = new ArrayList();
            displayData = generateDatasetTree(exbean, db);
            this.setUserOrderedData(displayData);
            this.setStudyInfoShown(false);
            this.setOrderedData(true);
            this.setExtractData(true);
            this.setSubmitDataModule(false);
            this.setCreateDataset(false);
        } else if (page.equals(Page.LIST_STUDY_SUBJECT) || page.equals(Page.LIST_STUDY_SUBJECTS) || page.equals(Page.SUBMIT_DATA) || page.equals(Page.SUBMIT_DATA_SERVLET)) {
            this.reset();
            this.setStudyInfoShown(true);
            this.setOrderedData(true);
            this.setExtractData(false);
            this.setSubmitDataModule(false);
            this.setCreateDataset(false);
            this.setIconInfoShown(false);
            this.setManageSubject(true);
            // don't want to show DDE icon key for subject matrix page
            request.setAttribute("showDDEIcon", Boolean.FALSE);
        } else if (page.equals(Page.VIEW_SECTION_DATA_ENTRY) || page.equals(Page.VIEW_SECTION_DATA_ENTRY_SERVLET)) {
            this.reset();
            this.setStudyInfoShown(true);
            this.setOrderedData(true);
            this.setExtractData(false);
            this.setSubmitDataModule(false);
            this.setCreateDataset(false);
            this.setIconInfoShown(true);
            this.setManageSubject(false);
        } else if (page.equals(Page.CREATE_SUBJECT_GROUP_CLASS) || page.equals(Page.CREATE_SUBJECT_GROUP_CLASS_CONFIRM) || page.equals(Page.UPDATE_SUBJECT_GROUP_CLASS) || page.equals(Page.UPDATE_SUBJECT_GROUP_CLASS_CONFIRM)) {
            this.reset();
            this.setStudyInfoShown(true);
            this.setOrderedData(true);
            this.setExtractData(false);
            this.setSubmitDataModule(false);
            this.setCreateDataset(false);
            this.setIconInfoShown(true);
            this.setManageSubject(false);
        } else {
            // automatically reset if we don't know what's happening
            this.reset();
            this.setStudyInfoShown(true);
            this.setOrderedData(true);
            this.setExtractData(false);
            this.setSubmitDataModule(false);
            this.setCreateDataset(false);
            this.setIconInfoShown(true);
            this.setManageSubject(false);
        }
    } catch (Exception e) {
        this.reset();
    }
}

Example 47 with SectionBean

use of org.akaza.openclinica.bean.submit.SectionBean in project OpenClinica by OpenClinica.

the class ViewItemDetailServlet method processRequest.

@Override
public void processRequest() throws Exception {
    FormProcessor fp = new FormProcessor(request);
    int itemId = fp.getInt(ITEM_ID);
    String itemOid = fp.getString(ITEM_OID);
    ItemDAO idao = new ItemDAO(sm.getDataSource());
    ItemFormMetadataDAO ifmdao = new ItemFormMetadataDAO(sm.getDataSource());
    ItemGroupMetadataDAO igmdao = new ItemGroupMetadataDAO(sm.getDataSource());
    CRFVersionDAO cvdao = new CRFVersionDAO(sm.getDataSource());
    CRFDAO cdao = new CRFDAO(sm.getDataSource());
    SectionDAO sectionDao = new SectionDAO(sm.getDataSource());
    if (itemId == 0 && itemOid == null) {
        addPageMessage(respage.getString("please_choose_an_item_first"));
        forwardPage(Page.ITEM_DETAIL);
        return;
    }
    ItemBean item = itemId > 0 ? (ItemBean) idao.findByPK(itemId) : (ItemBean) idao.findByOid(itemOid).get(0);
    ArrayList versions = idao.findAllVersionsByItemId(item.getId());
    ArrayList versionItems = new ArrayList();
    CRFBean crf = null;
    ItemFormMetadataBean imfBean = null;
    // finds each item metadata for each version
    for (int i = 0; i < versions.size(); i++) {
        Integer versionId = (Integer) versions.get(i);
        CRFVersionBean version = (CRFVersionBean) cvdao.findByPK(versionId.intValue());
        if (versionId != null && versionId.intValue() > 0) {
            // YW 08-22-2007
            if (igmdao.versionIncluded(versionId)) {
                imfBean = ifmdao.findByItemIdAndCRFVersionId(item.getId(), versionId.intValue());
                imfBean.setCrfVersionName(version.getName());
                crf = (CRFBean) cdao.findByPK(version.getCrfId());
                imfBean.setCrfName(crf.getName());
                versionItems.add(imfBean);
            } else {
                imfBean = ifmdao.findByItemIdAndCRFVersionIdNotInIGM(item.getId(), versionId.intValue());
                imfBean.setCrfVersionName(version.getName());
                crf = (CRFBean) cdao.findByPK(version.getCrfId());
                imfBean.setCrfName(crf.getName());
                versionItems.add(imfBean);
            }
        }
    }
    SectionBean section = (SectionBean) sectionDao.findByPK(imfBean.getSectionId());
    request.setAttribute(VERSION_ITEMS, versionItems);
    request.setAttribute(ITEM_BEAN, item);
    request.setAttribute("crf", crf);
    request.setAttribute("section", section);
    request.setAttribute("ifmdBean", imfBean);
    forwardPage(Page.ITEM_DETAIL);
}

Example 48 with SectionBean

use of org.akaza.openclinica.bean.submit.SectionBean in project OpenClinica by OpenClinica.

the class PrintEventCRFServlet method processRequest.

@Override
public void processRequest(HttpServletRequest request, HttpServletResponse response) throws Exception {
    FormProcessor fp = new FormProcessor(request);
    StudyBean currentStudy = (StudyBean) request.getSession().getAttribute("study");
    SectionBean sb = (SectionBean) request.getAttribute(SECTION_BEAN);
    // The PrintDataEntry servlet handles this parameter
    int eventCRFId = fp.getInt("ecId");
    //JN:The following were the the global variables, moved as local.
    EventCRFBean ecb = (EventCRFBean) request.getAttribute(INPUT_EVENT_CRF);
    StudyEventDefinitionDAO sedao = new StudyEventDefinitionDAO(getDataSource());
    int defId = fp.getInt("id", true);
    boolean isSubmitted = false;
    ArrayList<SectionBean> allSectionBeans;
    if (defId == 0) {
        addPageMessage(respage.getString("please_choose_a_definition_to_view"), request);
        forwardPage(Page.LIST_DEFINITION_SERVLET, request, response);
    } else {
        // definition id
        StudyEventDefinitionBean sed = (StudyEventDefinitionBean) sedao.findByPK(defId);
        EventDefinitionCRFDAO edao = new EventDefinitionCRFDAO(getDataSource());
        ArrayList eventDefinitionCRFs = (ArrayList) edao.findAllByDefinition(defId);
        CRFVersionDAO cvdao = new CRFVersionDAO(getDataSource());
        CRFDAO cdao = new CRFDAO(getDataSource());
        ArrayList defaultVersions = new ArrayList();
        for (int i = 0; i < eventDefinitionCRFs.size(); i++) {
            EventDefinitionCRFBean edc = (EventDefinitionCRFBean) eventDefinitionCRFs.get(i);
            ArrayList versions = (ArrayList) cvdao.findAllByCRF(edc.getCrfId());
            edc.setVersions(versions);
            CRFBean crf = (CRFBean) cdao.findByPK(edc.getCrfId());
            // edc.setCrfLabel(crf.getLabel());
            edc.setCrfName(crf.getName());
            // to show/hide edit action on jsp page
            if (crf.getStatus().equals(Status.AVAILABLE)) {
                edc.setOwner(crf.getOwner());
            }
            CRFVersionBean defaultVersion = (CRFVersionBean) cvdao.findByPK(edc.getDefaultVersionId());
            //There could be separate EventDefinitionCRF objects with same default version id.
            if (defaultVersions.contains(defaultVersion)) {
                continue;
            }
            edc.setDefaultVersionName(defaultVersion.getName());
            if (edc.getStatus().isAvailable()) {
                defaultVersions.add(defaultVersion);
            }
        }
        // Whether IE6 or IE7 is involved
        String isIE = fp.getString("ie");
        if ("y".equalsIgnoreCase(isIE)) {
            request.setAttribute("isInternetExplorer", "true");
        }
        int eventDefinitionCRFId = fp.getInt("eventDefinitionCRFId");
        // EventDefinitionCRFDao findByStudyEventIdAndCRFVersionId(int
        // studyEventId, int crfVersionId)
        SectionDAO sdao = new SectionDAO(getDataSource());
        CRFVersionDAO crfVersionDAO = new CRFVersionDAO(getDataSource());
        CRFDAO crfDao = new CRFDAO(getDataSource());
        ArrayList printCrfBeans = new ArrayList();
        for (Iterator it = defaultVersions.iterator(); it.hasNext(); ) {
            allSectionBeans = new ArrayList<SectionBean>();
            ArrayList sectionBeans = new ArrayList();
            CRFVersionBean crfVersionBean = (CRFVersionBean) it.next();
            // The existing application doesn't print null values, even if they are
            // defined in the event definition
            //            int crfVersionId = fp.getInt("id");
            // BWP 2/7/2008>> Find out if the CRF has grouped tables, and if so,
            // use
            // that dedicated JSP
            ItemGroupDAO itemGroupDao = new ItemGroupDAO(getDataSource());
            // Find truely grouped tables, not groups with a name of 'Ungrouped'
            List<ItemGroupBean> itemGroupBeans = itemGroupDao.findOnlyGroupsByCRFVersionID(crfVersionBean.getId());
            CRFBean crfBean = crfDao.findByVersionId(crfVersionBean.getId());
            if (itemGroupBeans.size() > 0) {
                // get a DisplaySectionBean for each section of the CRF, sort
                // them, then
                // dispatch the request to a print JSP. The constructor for this
                // handler takes
                // a boolean value depending on whether data is involved or not
                // ('false' in terms of this
                // servlet; see PrintDataEntryServlet).
                DisplaySectionBeanHandler handler = new DisplaySectionBeanHandler(false, getDataSource(), getServletContext());
                handler.setCrfVersionId(crfVersionBean.getId());
                handler.setEventCRFId(eventCRFId);
                List<DisplaySectionBean> displaySectionBeans = handler.getDisplaySectionBeans();
                request.setAttribute("listOfDisplaySectionBeans", displaySectionBeans);
                // Make available the CRF names and versions for
                // the web page's header
                CRFVersionBean crfverBean = (CRFVersionBean) crfVersionDAO.findByPK(crfVersionBean.getId());
                request.setAttribute("crfVersionBean", crfverBean);
                request.setAttribute("crfBean", crfBean);
                // Set an attribute signaling that data is not involved
                request.setAttribute("dataInvolved", "false");
                PrintCRFBean printCrfBean = new PrintCRFBean();
                printCrfBean.setDisplaySectionBeans(displaySectionBeans);
                printCrfBean.setCrfVersionBean(crfVersionBean);
                printCrfBean.setCrfBean(crfBean);
                printCrfBean.setEventCrfBean(ecb);
                printCrfBeans.add(printCrfBean);
                printCrfBean.setGrouped(true);
                // IllegalStateException
                continue;
            }
            ecb = new EventCRFBean();
            ecb.setCRFVersionId(crfVersionBean.getId());
            CRFVersionBean version = (CRFVersionBean) crfVersionDAO.findByPK(crfVersionBean.getId());
            ArrayList sects = (ArrayList) sdao.findByVersionId(version.getId());
            for (int i = 0; i < sects.size(); i++) {
                sb = (SectionBean) sects.get(i);
                //super.sb = sb;
                int sectId = sb.getId();
                if (sectId > 0) {
                    allSectionBeans.add((SectionBean) sdao.findByPK(sectId));
                }
            }
            request.setAttribute(ALL_SECTION_BEANS, allSectionBeans);
            request.setAttribute(INPUT_EVENT_CRF, ecb);
            sectionBeans = super.getAllDisplayBeans(request);
            request.setAttribute(SECTION_BEAN, sb);
            DisplaySectionBean dsb = super.getDisplayBean(false, false, request, isSubmitted);
            //            request.setAttribute("allSections", sectionBeans);
            //            request.setAttribute("displayAllCRF", "1");
            //            request.setAttribute(BEAN_DISPLAY, dsb);
            //            request.setAttribute(BEAN_ANNOTATIONS, ecb.getAnnotations());
            //            request.setAttribute("sec", sb);
            //            request.setAttribute("EventCRFBean", super.ecb);
            PrintCRFBean printCrfBean = new PrintCRFBean();
            printCrfBean.setAllSections(sectionBeans);
            printCrfBean.setDisplaySectionBean(dsb);
            printCrfBean.setEventCrfBean(ecb);
            printCrfBean.setCrfVersionBean(crfVersionBean);
            printCrfBean.setCrfBean(crfBean);
            printCrfBeans.add(printCrfBean);
            printCrfBean.setGrouped(false);
        }
        String studyName = null;
        String siteName = null;
        if (currentStudy.getParentStudyId() > 0) {
            studyName = currentStudy.getParentStudyName();
            siteName = currentStudy.getName();
        } else {
            studyName = currentStudy.getName();
        }
        request.setAttribute("printCrfBeans", printCrfBeans);
        request.setAttribute("studyName", studyName);
        request.setAttribute("site", siteName);
        request.setAttribute("eventDefinition", sed.getName());
        forwardPage(Page.VIEW_DEFAULT_CRF_VERSIONS_PRINT, request, response);
    }
}

Example 49 with SectionBean

use of org.akaza.openclinica.bean.submit.SectionBean in project OpenClinica by OpenClinica.

the class PrintDataEntryServlet method processRequest.

@Override
public void processRequest(HttpServletRequest request, HttpServletResponse response) throws Exception {
    FormProcessor fp = new FormProcessor(request);
    boolean isSubmitted = false;
    int eventCRFId = fp.getInt("ecId");
    //JN:The following were the the global variables, moved as local.
    EventCRFBean ecb;
    SectionDAO sdao = new SectionDAO(getDataSource());
    ArrayList<SectionBean> allSectionBeans = new ArrayList<SectionBean>();
    ArrayList sectionBeans = new ArrayList();
    String age = "";
    StudyBean currentStudy = (StudyBean) request.getSession().getAttribute("study");
    SectionBean sb = (SectionBean) request.getAttribute(SECTION_BEAN);
    // Whether IE6 or IE7 is involved
    String isIE = fp.getString("ie");
    if ("y".equalsIgnoreCase(isIE)) {
        request.setAttribute("isInternetExplorer", "true");
    }
    if (eventCRFId == 0) {
        ecb = new EventCRFBean();
    // super.ecb.setCRFVersionId(sb.getCRFVersionId());
    } else {
        EventCRFDAO ecdao = new EventCRFDAO(getDataSource());
        ecb = (EventCRFBean) ecdao.findByPK(eventCRFId);
        // Get all the SectionBeans attached to this ECB
        ArrayList sects = sdao.findAllByCRFVersionId(ecb.getCRFVersionId());
        for (int i = 0; i < sects.size(); i++) {
            sb = (SectionBean) sects.get(i);
            //                super.sb = sb;
            int sectId = sb.getId();
            if (sectId > 0) {
                allSectionBeans.add((SectionBean) sdao.findByPK(sectId));
            }
        }
        // This is the StudySubjectBean
        StudySubjectDAO ssdao = new StudySubjectDAO(getDataSource());
        StudySubjectBean sub = (StudySubjectBean) ssdao.findByPK(ecb.getStudySubjectId());
        // This is the SubjectBean
        SubjectDAO subjectDao = new SubjectDAO(getDataSource());
        int subjectId = sub.getSubjectId();
        int studyId = sub.getStudyId();
        SubjectBean subject = (SubjectBean) subjectDao.findByPK(subjectId);
        StudyEventDAO sedao = new StudyEventDAO(getDataSource());
        StudyEventBean se = (StudyEventBean) sedao.findByPK(ecb.getStudyEventId());
        StudyEventDefinitionDAO seddao = new StudyEventDefinitionDAO(getDataSource());
        StudyEventDefinitionBean sed = (StudyEventDefinitionBean) seddao.findByPK(se.getStudyEventDefinitionId());
        se.setStudyEventDefinition(sed);
        // Let us process the age
        if (currentStudy.getStudyParameterConfig().getCollectDob().equals("1")) {
            // YW 11-16-2007 enrollment-date is used for computing age
            age = Utils.getInstacne().processAge(sub.getEnrollmentDate(), subject.getDateOfBirth());
        }
        // Get the study then the parent study
        StudyDAO studydao = new StudyDAO(getDataSource());
        StudyBean study = (StudyBean) studydao.findByPK(studyId);
        if (study.getParentStudyId() > 0) {
            // this is a site,find parent
            StudyBean parentStudy = (StudyBean) studydao.findByPK(study.getParentStudyId());
            request.setAttribute("studyTitle", parentStudy.getName() + " - " + study.getName());
        } else {
            request.setAttribute("studyTitle", study.getName());
        }
        request.setAttribute("studySubject", sub);
        request.setAttribute("subject", subject);
        request.setAttribute("studyEvent", se);
        request.setAttribute("age", age);
        request.setAttribute(INPUT_EVENT_CRF, ecb);
        request.setAttribute(SECTION_BEAN, sb);
        request.setAttribute(ALL_SECTION_BEANS, allSectionBeans);
        // Get the section beans from super
        sectionBeans = super.getAllDisplayBeans(request);
    }
    // Find out whether the sections involve groups
    ItemGroupDAO itemGroupDao = new ItemGroupDAO(getDataSource());
    // Find truely grouped tables, not groups with a name of 'Ungrouped'
    // CRF VERSION ID WILL BE 0 IF "ecId" IS NOT IN THE QUERYSTRING
    int crfVersionId = ecb.getCRFVersionId();
    List<ItemGroupBean> itemGroupBeans = itemGroupDao.findOnlyGroupsByCRFVersionID(crfVersionId);
    boolean sectionsHaveGroups = false;
    if (itemGroupBeans.size() > 0) {
        sectionsHaveGroups = true;
        // get a DisplaySectionBean for each section of the CRF, sort them,
        // then
        // dispatch the request to a print JSP. the constructor for this
        // handler takes
        // a boolean value depending on whether an event or data is involved
        // or not
        DisplaySectionBeanHandler handler = new DisplaySectionBeanHandler(true, getDataSource(), getServletContext());
        handler.setCrfVersionId(crfVersionId);
        handler.setEventCRFId(eventCRFId);
        List<DisplaySectionBean> displaySectionBeans = handler.getDisplaySectionBeans();
        CRFVersionDAO crfVersionDAO = new CRFVersionDAO(getDataSource());
        CRFDAO crfDao = new CRFDAO(getDataSource());
        request.setAttribute("listOfDisplaySectionBeans", displaySectionBeans);
        // Make available the CRF names and versions for
        // the web page's header
        CRFVersionBean crfverBean = (CRFVersionBean) crfVersionDAO.findByPK(crfVersionId);
        request.setAttribute("crfVersionBean", crfverBean);
        CRFBean crfBean = crfDao.findByVersionId(crfVersionId);
        request.setAttribute("crfBean", crfBean);
        // Set an attribute signaling that an event and/or data is involved
        request.setAttribute("dataInvolved", "true");
    }
    request.setAttribute(BEAN_ANNOTATIONS, ecb.getAnnotations());
    request.setAttribute("EventCRFBean", ecb);
    // We do not need most of these attributes if groups are involved
    if (!sectionsHaveGroups) {
        request.setAttribute(INPUT_EVENT_CRF, ecb);
        request.setAttribute(SECTION_BEAN, sb);
        DisplaySectionBean dsb = super.getDisplayBean(false, false, request, isSubmitted);
        request.setAttribute("allSections", sectionBeans);
        request.setAttribute("displayAll", "1");
        request.setAttribute(BEAN_DISPLAY, dsb);
        request.setAttribute("sec", sb);
        forwardPage(Page.VIEW_SECTION_DATA_ENTRY_PRINT, request, response);
    } else {
        // end if(! sectionsHaveGroups)
        forwardPage(Page.VIEW_SECTION_DATA_ENTRY_PRINT_GROUPS, request, response);
    }
}

Example 50 with SectionBean

use of org.akaza.openclinica.bean.submit.SectionBean in project OpenClinica by OpenClinica.

the class PrintAllSiteEventCRFServlet method processRequest.

@Override
public void processRequest(HttpServletRequest request, HttpServletResponse response) throws Exception {
    FormProcessor fp = new FormProcessor(request);
    // The PrintDataEntry servlet handles this parameter
    int siteId = fp.getInt("siteId");
    //JN:The following were the the global variables, moved as local.
    EventCRFBean ecb = (EventCRFBean) request.getAttribute(INPUT_EVENT_CRF);
    SectionBean sb = (SectionBean) request.getAttribute(SECTION_BEAN);
    StudyEventDefinitionDAO sedao = new StudyEventDefinitionDAO(getDataSource());
    EventDefinitionCRFDAO edao = new EventDefinitionCRFDAO(getDataSource());
    EventDefinitionCRFDAO edcdao = new EventDefinitionCRFDAO(getDataSource());
    ArrayList<SectionBean> allSectionBeans;
    StudyDAO studyDao = new StudyDAO(getDataSource());
    StudyBean site = (StudyBean) studyDao.findByPK(siteId);
    ArrayList<StudyEventDefinitionBean> seds = new ArrayList<StudyEventDefinitionBean>();
    seds = sedao.findAllByStudy(site);
    //        ArrayList eventDefinitionCRFs = (ArrayList) edao.findAllByStudy(site);
    CRFVersionDAO cvdao = new CRFVersionDAO(getDataSource());
    CRFDAO cdao = new CRFDAO(getDataSource());
    boolean isSubmitted = false;
    ArrayList<EventDefinitionCRFBean> edcs = new ArrayList();
    for (StudyEventDefinitionBean sed : seds) {
        int defId = sed.getId();
        edcs.addAll(edcdao.findAllByDefinitionAndSiteIdAndParentStudyId(defId, siteId, site.getParentStudyId()));
    }
    Map eventDefinitionDefaultVersions = new LinkedHashMap();
    Map eventDefinitionEventDefCrf = new LinkedHashMap<StudyEventDefinitionBean, EventDefinitionCRFBean>();
    for (int i = 0; i < edcs.size(); i++) {
        EventDefinitionCRFBean edc = edcs.get(i);
        if (!edc.getStatus().equals(Status.AVAILABLE)) {
            continue;
        }
        ArrayList versions = (ArrayList) cvdao.findAllByCRF(edc.getCrfId());
        edc.setVersions(versions);
        CRFBean crf = (CRFBean) cdao.findByPK(edc.getCrfId());
        // edc.setCrfLabel(crf.getLabel());
        edc.setCrfName(crf.getName());
        // to show/hide edit action on jsp page
        if (crf.getStatus().equals(Status.AVAILABLE)) {
            edc.setOwner(crf.getOwner());
        }
        CRFVersionBean defaultVersion = (CRFVersionBean) cvdao.findByPK(edc.getDefaultVersionId());
        StudyEventDefinitionBean studyEventDefinitionBean = (StudyEventDefinitionBean) sedao.findByPK(edc.getStudyEventDefinitionId());
        edc.setDefaultVersionName(defaultVersion.getName());
        if (defaultVersion.getStatus().isAvailable()) {
            List list = (ArrayList) eventDefinitionDefaultVersions.get(studyEventDefinitionBean);
            if (list == null)
                list = new ArrayList();
            list.add(defaultVersion);
            eventDefinitionDefaultVersions.put(studyEventDefinitionBean, list);
            eventDefinitionEventDefCrf.put(studyEventDefinitionBean, edc);
        }
    }
    // Whether IE6 or IE7 is involved
    String isIE = fp.getString("ie");
    if ("y".equalsIgnoreCase(isIE)) {
        request.setAttribute("isInternetExplorer", "true");
    }
    SectionDAO sdao = new SectionDAO(getDataSource());
    CRFVersionDAO crfVersionDAO = new CRFVersionDAO(getDataSource());
    CRFDAO crfDao = new CRFDAO(getDataSource());
    Map sedCrfBeans = null;
    for (Iterator it = eventDefinitionDefaultVersions.keySet().iterator(); it.hasNext(); ) {
        if (sedCrfBeans == null)
            sedCrfBeans = new LinkedHashMap();
        StudyEventDefinitionBean sedBean = (StudyEventDefinitionBean) it.next();
        List crfVersions = (ArrayList) eventDefinitionDefaultVersions.get(sedBean);
        for (Iterator crfIt = crfVersions.iterator(); crfIt.hasNext(); ) {
            CRFVersionBean crfVersionBean = (CRFVersionBean) crfIt.next();
            allSectionBeans = new ArrayList<SectionBean>();
            ArrayList sectionBeans = new ArrayList();
            ItemGroupDAO itemGroupDao = new ItemGroupDAO(getDataSource());
            // Find truely grouped tables, not groups with a name of 'Ungrouped'
            List<ItemGroupBean> itemGroupBeans = itemGroupDao.findOnlyGroupsByCRFVersionID(crfVersionBean.getId());
            CRFBean crfBean = crfDao.findByVersionId(crfVersionBean.getId());
            if (itemGroupBeans.size() > 0) {
                // get a DisplaySectionBean for each section of the CRF, sort
                // them, then
                // dispatch the request to a print JSP. The constructor for this
                // handler takes
                // a boolean value depending on whether data is involved or not
                // ('false' in terms of this
                // servlet; see PrintDataEntryServlet).
                DisplaySectionBeanHandler handler = new DisplaySectionBeanHandler(false, getDataSource(), getServletContext());
                handler.setCrfVersionId(crfVersionBean.getId());
                //handler.setEventCRFId(eventCRFId);
                List<DisplaySectionBean> displaySectionBeans = handler.getDisplaySectionBeans();
                request.setAttribute("listOfDisplaySectionBeans", displaySectionBeans);
                // Make available the CRF names and versions for
                // the web page's header
                CRFVersionBean crfverBean = (CRFVersionBean) crfVersionDAO.findByPK(crfVersionBean.getId());
                request.setAttribute("crfVersionBean", crfverBean);
                request.setAttribute("crfBean", crfBean);
                // Set an attribute signaling that data is not involved
                request.setAttribute("dataInvolved", "false");
                PrintCRFBean printCrfBean = new PrintCRFBean();
                printCrfBean.setDisplaySectionBeans(displaySectionBeans);
                printCrfBean.setCrfVersionBean(crfVersionBean);
                printCrfBean.setCrfBean(crfBean);
                printCrfBean.setEventCrfBean(ecb);
                printCrfBean.setGrouped(true);
                List list = (ArrayList) sedCrfBeans.get(sedBean);
                if (list == null)
                    list = new ArrayList();
                list.add(printCrfBean);
                sedCrfBeans.put(sedBean, list);
                continue;
            }
            ecb = new EventCRFBean();
            ecb.setCRFVersionId(crfVersionBean.getId());
            CRFVersionBean version = (CRFVersionBean) crfVersionDAO.findByPK(crfVersionBean.getId());
            ArrayList sects = (ArrayList) sdao.findByVersionId(version.getId());
            for (int i = 0; i < sects.size(); i++) {
                sb = (SectionBean) sects.get(i);
                int sectId = sb.getId();
                if (sectId > 0) {
                    allSectionBeans.add((SectionBean) sdao.findByPK(sectId));
                }
            }
            EventDefinitionCRFBean edcBean = (EventDefinitionCRFBean) eventDefinitionEventDefCrf.get(sedBean);
            request.setAttribute(EVENT_DEF_CRF_BEAN, edcBean);
            request.setAttribute(INPUT_EVENT_CRF, ecb);
            request.setAttribute(SECTION_BEAN, sb);
            request.setAttribute(ALL_SECTION_BEANS, allSectionBeans);
            sectionBeans = super.getAllDisplayBeans(request);
            DisplaySectionBean dsb = super.getDisplayBean(false, false, request, isSubmitted);
            PrintCRFBean printCrfBean = new PrintCRFBean();
            printCrfBean.setAllSections(sectionBeans);
            printCrfBean.setDisplaySectionBean(dsb);
            printCrfBean.setEventCrfBean(ecb);
            printCrfBean.setCrfVersionBean(crfVersionBean);
            printCrfBean.setCrfBean(crfBean);
            printCrfBean.setGrouped(false);
            List list = (ArrayList) sedCrfBeans.get(sedBean);
            if (list == null)
                list = new ArrayList();
            list.add(printCrfBean);
            sedCrfBeans.put(sedBean, list);
        }
    }
    StudyBean parentStudy = (StudyBean) studyDao.findByPK(site.getParentStudyId());
    String studyName = parentStudy.getName();
    String siteName = site.getName();
    request.setAttribute("sedCrfBeans", sedCrfBeans);
    request.setAttribute("studyName", studyName);
    request.setAttribute("site", siteName);
    forwardPage(Page.VIEW_ALL_SITE_DEFAULT_CRF_VERSIONS_PRINT, request, response);
}