Examples with UserAccountDAO org.akaza.openclinica.dao.login.UserAccountDAO used on opensource projects

Example 46 with UserAccountDAO

use of org.akaza.openclinica.dao.login.UserAccountDAO in project OpenClinica by OpenClinica.

the class ViewStudyServlet method processRequest.

@Override
public void processRequest() throws Exception {
    StudyDAO sdao = new StudyDAO(sm.getDataSource());
    FormProcessor fp = new FormProcessor(request);
    int studyId = fp.getInt("id");
    if (studyId == 0) {
        addPageMessage(respage.getString("please_choose_a_study_to_view"));
        forwardPage(Page.STUDY_LIST_SERVLET);
    } else {
        if (currentStudy.getId() != studyId && currentStudy.getParentStudyId() != studyId) {
            checkRoleByUserAndStudy(ub, studyId, 0);
        }
        String viewFullRecords = fp.getString("viewFull");
        StudyBean study = (StudyBean) sdao.findByPK(studyId);
        StudyConfigService scs = new StudyConfigService(sm.getDataSource());
        study = scs.setParametersForStudy(study);
        StudyParameterValueDAO spvdao = new StudyParameterValueDAO(sm.getDataSource());
        String randomizationStatusInOC = spvdao.findByHandleAndStudy(study.getId(), "randomization").getValue();
        String participantStatusInOC = spvdao.findByHandleAndStudy(study.getId(), "participantPortal").getValue();
        if (participantStatusInOC == "")
            participantStatusInOC = "disabled";
        if (randomizationStatusInOC == "")
            randomizationStatusInOC = "disabled";
        RandomizationRegistrar randomizationRegistrar = new RandomizationRegistrar();
        SeRandomizationDTO seRandomizationDTO = randomizationRegistrar.getCachedRandomizationDTOObject(study.getOid(), false);
        if (seRandomizationDTO != null && seRandomizationDTO.getStatus().equalsIgnoreCase("ACTIVE") && randomizationStatusInOC.equalsIgnoreCase("enabled")) {
            study.getStudyParameterConfig().setRandomization("enabled");
        } else {
            study.getStudyParameterConfig().setRandomization("disabled");
        }
        ;
        ParticipantPortalRegistrar participantPortalRegistrar = new ParticipantPortalRegistrar();
        String pStatus = participantPortalRegistrar.getCachedRegistrationStatus(study.getOid(), session);
        if (participantPortalRegistrar != null && pStatus.equalsIgnoreCase("ACTIVE") && participantStatusInOC.equalsIgnoreCase("enabled")) {
            study.getStudyParameterConfig().setParticipantPortal("enabled");
        } else {
            study.getStudyParameterConfig().setParticipantPortal("disabled");
        }
        ;
        request.setAttribute("studyToView", study);
        if ("yes".equalsIgnoreCase(viewFullRecords)) {
            UserAccountDAO udao = new UserAccountDAO(sm.getDataSource());
            StudySubjectDAO ssdao = new StudySubjectDAO(sm.getDataSource());
            ArrayList sites = new ArrayList();
            ArrayList userRoles = new ArrayList();
            ArrayList subjects = new ArrayList();
            if (this.currentStudy.getParentStudyId() > 0 && this.currentRole.getRole().getId() > 3) {
                sites.add(this.currentStudy);
                userRoles = udao.findAllUsersByStudy(currentStudy.getId());
                subjects = ssdao.findAllByStudy(currentStudy);
            } else {
                sites = (ArrayList) sdao.findAllByParent(studyId);
                userRoles = udao.findAllUsersByStudy(studyId);
                subjects = ssdao.findAllByStudy(study);
            }
            // find all subjects in the study, include ones in sites
            StudyEventDefinitionDAO seddao = new StudyEventDefinitionDAO(sm.getDataSource());
            EventDefinitionCRFDAO edcdao = new EventDefinitionCRFDAO(sm.getDataSource());
            // StudyEventDAO sedao = new StudyEventDAO(sm.getDataSource());
            // ArrayList displayStudySubs = new ArrayList();
            // for (int i = 0; i < subjects.size(); i++) {
            // StudySubjectBean studySub = (StudySubjectBean) subjects.get(i);
            // // find all events
            // ArrayList events = sedao.findAllByStudySubject(studySub);
            // 
            // // find all eventcrfs for each event
            // EventCRFDAO ecdao = new EventCRFDAO(sm.getDataSource());
            // 
            // DisplayStudySubjectBean dssb = new DisplayStudySubjectBean();
            // dssb.setStudyEvents(events);
            // dssb.setStudySubject(studySub);
            // displayStudySubs.add(dssb);
            // }
            // find all events in the study, include ones in sites
            ArrayList definitions = seddao.findAllByStudy(study);
            for (int i = 0; i < definitions.size(); i++) {
                StudyEventDefinitionBean def = (StudyEventDefinitionBean) definitions.get(i);
                ArrayList crfs = (ArrayList) edcdao.findAllActiveParentsByEventDefinitionId(def.getId());
                def.setCrfNum(crfs.size());
            }
            String moduleManager = CoreResources.getField("moduleManager");
            request.setAttribute("moduleManager", moduleManager);
            String portalURL = CoreResources.getField("portalURL");
            request.setAttribute("portalURL", portalURL);
            request.setAttribute("config", study);
            request.setAttribute("sitesToView", sites);
            request.setAttribute("siteNum", sites.size() + "");
            request.setAttribute("userRolesToView", userRoles);
            request.setAttribute("userNum", userRoles.size() + "");
            // request.setAttribute("subjectsToView", displayStudySubs);
            // request.setAttribute("subjectNum", subjects.size() + "");
            request.setAttribute("definitionsToView", definitions);
            request.setAttribute("defNum", definitions.size() + "");
            forwardPage(Page.VIEW_FULL_STUDY);
        } else {
            forwardPage(Page.VIEW_STUDY);
        }
    }
}

Example 47 with UserAccountDAO

use of org.akaza.openclinica.dao.login.UserAccountDAO in project OpenClinica by OpenClinica.

the class RestoreSiteServlet method processRequest.

@Override
public void processRequest() throws Exception {
    StudyDAO sdao = new StudyDAO(sm.getDataSource());
    String idString = request.getParameter("id");
    logger.info("site id:" + idString);
    int siteId = Integer.valueOf(idString.trim()).intValue();
    StudyBean study = (StudyBean) sdao.findByPK(siteId);
    // find all user and roles
    UserAccountDAO udao = new UserAccountDAO(sm.getDataSource());
    ArrayList userRoles = udao.findAllByStudyId(siteId);
    // find all subjects
    StudySubjectDAO ssdao = new StudySubjectDAO(sm.getDataSource());
    ArrayList subjects = ssdao.findAllByStudy(study);
    // find all events
    StudyEventDefinitionDAO sefdao = new StudyEventDefinitionDAO(sm.getDataSource());
    ArrayList definitions = sefdao.findAllByStudy(study);
    String action = request.getParameter("action");
    if (StringUtil.isBlank(idString)) {
        addPageMessage(respage.getString("please_choose_a_site_to_restore"));
        forwardPage(Page.SITE_LIST_SERVLET);
    } else {
        if ("confirm".equalsIgnoreCase(action)) {
            // site can be restored when its parent study is not "removed"
            // -- YW -6-21-2007
            StudyBean parentstudy = (StudyBean) sdao.findByPK(study.getParentStudyId());
            if (!"removed".equals(parentstudy.getStatus().getName())) {
                request.setAttribute("siteToRestore", study);
                request.setAttribute("userRolesToRestore", userRoles);
                request.setAttribute("subjectsToRestore", subjects);
            // request.setAttribute("definitionsToRestore",
            // definitions);
            } else {
                MessageFormat mf = new MessageFormat("");
                mf.applyPattern(respage.getString("choosen_site_cannot_restored"));
                Object[] arguments = { study.getName(), parentstudy.getName() };
                addPageMessage(mf.format(arguments));
                forwardPage(Page.STUDY_LIST_SERVLET);
            }
            forwardPage(Page.RESTORE_SITE);
        } else {
            logger.info("submit to restore the site");
            // change all statuses to unavailable
            StudyDAO studao = new StudyDAO(sm.getDataSource());
            study.setStatus(study.getOldStatus());
            study.setUpdater(ub);
            study.setUpdatedDate(new Date());
            studao.update(study);
            // restore all users and roles
            for (int i = 0; i < userRoles.size(); i++) {
                StudyUserRoleBean role = (StudyUserRoleBean) userRoles.get(i);
                if (role.getStatus().equals(Status.AUTO_DELETED)) {
                    role.setStatus(Status.AVAILABLE);
                    role.setUpdater(ub);
                    role.setUpdatedDate(new Date());
                    // YW << So study_user_role table status_id field can be
                    // updated
                    udao.updateStudyUserRole(role, role.getUserName());
                }
            // YW 06-18-2007 >>
            }
            // study
            if (study.getId() == currentStudy.getId()) {
                currentStudy.setStatus(Status.AVAILABLE);
                StudyUserRoleBean r = (new UserAccountDAO(sm.getDataSource())).findRoleByUserNameAndStudyId(ub.getName(), currentStudy.getId());
                StudyUserRoleBean rInParent = (new UserAccountDAO(sm.getDataSource())).findRoleByUserNameAndStudyId(ub.getName(), currentStudy.getParentStudyId());
                // according to logic in SecureController.java: inherited
                // role from parent study, pick the higher role
                currentRole.setRole(Role.max(r.getRole(), rInParent.getRole()));
            }
            // YW >>
            // restore all study_group
            StudyGroupDAO sgdao = new StudyGroupDAO(sm.getDataSource());
            SubjectGroupMapDAO sgmdao = new SubjectGroupMapDAO(sm.getDataSource());
            ArrayList groups = sgdao.findAllByStudy(study);
            for (int i = 0; i < groups.size(); i++) {
                StudyGroupBean group = (StudyGroupBean) groups.get(i);
                if (group.getStatus().equals(Status.AUTO_DELETED)) {
                    group.setStatus(Status.AVAILABLE);
                    group.setUpdater(ub);
                    group.setUpdatedDate(new Date());
                    sgdao.update(group);
                    // all subject_group_map
                    ArrayList subjectGroupMaps = sgmdao.findAllByStudyGroupId(group.getId());
                    for (int j = 0; j < subjectGroupMaps.size(); j++) {
                        SubjectGroupMapBean sgMap = (SubjectGroupMapBean) subjectGroupMaps.get(j);
                        if (sgMap.getStatus().equals(Status.AUTO_DELETED)) {
                            sgMap.setStatus(Status.AVAILABLE);
                            sgMap.setUpdater(ub);
                            sgMap.setUpdatedDate(new Date());
                            sgmdao.update(sgMap);
                        }
                    }
                }
            }
            // restore all events with subjects
            EventDefinitionCRFDAO edcdao = new EventDefinitionCRFDAO(sm.getDataSource());
            StudyEventDAO sedao = new StudyEventDAO(sm.getDataSource());
            for (int i = 0; i < subjects.size(); i++) {
                StudySubjectBean subject = (StudySubjectBean) subjects.get(i);
                if (subject.getStatus().equals(Status.AUTO_DELETED)) {
                    subject.setStatus(Status.AVAILABLE);
                    subject.setUpdater(ub);
                    subject.setUpdatedDate(new Date());
                    ssdao.update(subject);
                    ArrayList events = sedao.findAllByStudySubject(subject);
                    EventCRFDAO ecdao = new EventCRFDAO(sm.getDataSource());
                    for (int j = 0; j < events.size(); j++) {
                        StudyEventBean event = (StudyEventBean) events.get(j);
                        if (event.getStatus().equals(Status.AUTO_DELETED)) {
                            event.setStatus(Status.AVAILABLE);
                            event.setUpdater(ub);
                            event.setUpdatedDate(new Date());
                            sedao.update(event);
                            ArrayList eventCRFs = ecdao.findAllByStudyEvent(event);
                            ItemDataDAO iddao = new ItemDataDAO(sm.getDataSource());
                            for (int k = 0; k < eventCRFs.size(); k++) {
                                // YW << fix broken page for storing site
                                EventCRFBean eventCRF = (EventCRFBean) eventCRFs.get(k);
                                // >> YW
                                if (eventCRF.getStatus().equals(Status.AUTO_DELETED)) {
                                    eventCRF.setStatus(eventCRF.getOldStatus());
                                    eventCRF.setUpdater(ub);
                                    eventCRF.setUpdatedDate(new Date());
                                    ecdao.update(eventCRF);
                                    ArrayList itemDatas = iddao.findAllByEventCRFId(eventCRF.getId());
                                    for (int a = 0; a < itemDatas.size(); a++) {
                                        ItemDataBean item = (ItemDataBean) itemDatas.get(a);
                                        if (item.getStatus().equals(Status.AUTO_DELETED)) {
                                            item.setStatus(item.getOldStatus());
                                            item.setUpdater(ub);
                                            item.setUpdatedDate(new Date());
                                            iddao.update(item);
                                        }
                                    }
                                }
                            }
                        }
                    }
                }
            }
            // for subjects
            DatasetDAO datadao = new DatasetDAO(sm.getDataSource());
            ArrayList dataset = datadao.findAllByStudyId(study.getId());
            for (int i = 0; i < dataset.size(); i++) {
                DatasetBean data = (DatasetBean) dataset.get(i);
                data.setStatus(Status.AVAILABLE);
                data.setUpdater(ub);
                data.setUpdatedDate(new Date());
                datadao.update(data);
            }
            addPageMessage(respage.getString("this_site_has_been_restored_succesfully"));
            String fromListSite = (String) session.getAttribute("fromListSite");
            if (fromListSite != null && fromListSite.equals("yes") && currentRole.getRole().equals(Role.STUDYDIRECTOR)) {
                session.removeAttribute("fromListSite");
                forwardPage(Page.SITE_LIST_SERVLET);
            } else {
                session.removeAttribute("fromListSite");
                if (currentRole.getRole().equals(Role.ADMIN)) {
                    forwardPage(Page.STUDY_LIST_SERVLET);
                } else {
                    forwardPage(Page.SITE_LIST_SERVLET);
                }
            }
        }
    }
}

Example 48 with UserAccountDAO

use of org.akaza.openclinica.dao.login.UserAccountDAO in project OpenClinica by OpenClinica.

the class SignStudySubjectServlet method processRequest.

@Override
public void processRequest() throws Exception {
    SubjectDAO sdao = new SubjectDAO(sm.getDataSource());
    StudySubjectDAO subdao = new StudySubjectDAO(sm.getDataSource());
    FormProcessor fp = new FormProcessor(request);
    String action = fp.getString("action");
    // studySubjectId
    int studySubId = fp.getInt("id", true);
    String module = fp.getString(MODULE);
    request.setAttribute(MODULE, module);
    if (studySubId == 0) {
        addPageMessage(respage.getString("please_choose_a_subject_to_view"));
        forwardPage(Page.LIST_STUDY_SUBJECTS);
        return;
    }
    StudySubjectBean studySub = (StudySubjectBean) subdao.findByPK(studySubId);
    if (!permitSign(studySub, sm.getDataSource())) {
        addPageMessage(respage.getString("subject_event_cannot_signed"));
        // forwardPage(Page.SUBMIT_DATA_SERVLET);
        forwardPage(Page.LIST_STUDY_SUBJECTS_SERVLET);
        // >> changed tbh, 06/2009
        return;
    }
    if (action.equalsIgnoreCase("confirm")) {
        String username = request.getParameter("j_user");
        String password = request.getParameter("j_pass");
        SecurityManager securityManager = ((SecurityManager) SpringServletAccess.getApplicationContext(context).getBean("securityManager"));
        // String encodedUserPass =
        // org.akaza.openclinica.core.SecurityManager
        // .getInstance().encrytPassword(password);
        UserAccountBean ub = (UserAccountBean) session.getAttribute("userBean");
        if (securityManager.verifyPassword(password, getUserDetails()) && ub.getName().equals(username)) {
            if (signSubjectEvents(studySub, sm.getDataSource(), ub)) {
                // Making the StudySubject signed as all the events have
                // become signed.
                studySub.setStatus(Status.SIGNED);
                studySub.setUpdater(ub);
                subdao.update(studySub);
                addPageMessage(respage.getString("subject_event_signed"));
                // forwardPage(Page.SUBMIT_DATA_SERVLET);
                forwardPage(Page.LIST_STUDY_SUBJECTS_SERVLET);
                // >> changed tbh, 06/2009
                return;
            } else {
                addPageMessage(respage.getString("errors_in_submission_see_below"));
                forwardPage(Page.LIST_STUDY_SUBJECTS);
                return;
            }
        } else {
            request.setAttribute("id", new Integer(studySubId).toString());
            addPageMessage(restext.getString("password_match"));
            forwardPage(Page.LIST_STUDY_SUBJECTS);
            return;
        }
    }
    request.setAttribute("studySub", studySub);
    int studyId = studySub.getStudyId();
    int subjectId = studySub.getSubjectId();
    SubjectBean subject = (SubjectBean) sdao.findByPK(subjectId);
    if (currentStudy.getStudyParameterConfig().getCollectDob().equals("2")) {
        Date dob = subject.getDateOfBirth();
        if (dob != null) {
            Calendar cal = Calendar.getInstance();
            cal.setTime(dob);
            int year = cal.get(Calendar.YEAR);
            request.setAttribute("yearOfBirth", new Integer(year));
        } else {
            request.setAttribute("yearOfBirth", "");
        }
    }
    request.setAttribute("subject", subject);
    StudyDAO studydao = new StudyDAO(sm.getDataSource());
    StudyBean study = (StudyBean) studydao.findByPK(studyId);
    StudyParameterValueDAO spvdao = new StudyParameterValueDAO(sm.getDataSource());
    study.getStudyParameterConfig().setCollectDob(spvdao.findByHandleAndStudy(studyId, "collectDob").getValue());
    if (study.getParentStudyId() > 0) {
        // this is a site,find parent
        StudyBean parentStudy = (StudyBean) studydao.findByPK(study.getParentStudyId());
        request.setAttribute("parentStudy", parentStudy);
    } else {
        request.setAttribute("parentStudy", new StudyBean());
    }
    ArrayList children = (ArrayList) sdao.findAllChildrenByPK(subjectId);
    request.setAttribute("children", children);
    // find study events
    StudyEventDAO sedao = new StudyEventDAO(sm.getDataSource());
    StudyEventDefinitionDAO seddao = new StudyEventDefinitionDAO(sm.getDataSource());
    EventDefinitionCRFDAO edcdao = new EventDefinitionCRFDAO(sm.getDataSource());
    // find all eventcrfs for each event
    EventCRFDAO ecdao = new EventCRFDAO(sm.getDataSource());
    ArrayList<DisplayStudyEventBean> displayEvents = getDisplayStudyEventsForStudySubject(study, studySub, sm.getDataSource(), ub, currentRole);
    DiscrepancyNoteUtil discNoteUtil = new DiscrepancyNoteUtil();
    // Don't filter for now; disc note beans are returned with eventCRFId
    // set
    discNoteUtil.injectParentDiscNotesIntoDisplayStudyEvents(displayEvents, new HashSet(), sm.getDataSource(), 0);
    // All the displaystudyevents for one subject
    request.setAttribute("displayStudyEvents", displayEvents);
    // Set up a Map for the JSP view, mapping the eventCRFId to another Map:
    // the
    // inner Map maps the resolution status name to the number of notes for
    // that
    // eventCRF id, as in New --> 2
    Map discNoteByEventCRFid = discNoteUtil.createDiscNoteMapByEventCRF(displayEvents);
    request.setAttribute("discNoteByEventCRFid", discNoteByEventCRFid);
    EntityBeanTable table = fp.getEntityBeanTable();
    // sort by start date,
    table.setSortingIfNotExplicitlySet(1, false);
    // desc
    ArrayList allEventRows = DisplayStudyEventRow.generateRowsFromBeans(displayEvents);
    String[] columns = { resword.getString("event") + " (" + resword.getString("occurrence_number") + ")", resword.getString("start_date1"), resword.getString("location"), resword.getString("status"), resword.getString("actions"), resword.getString("CRFs_atrib") };
    table.setColumns(new ArrayList(Arrays.asList(columns)));
    table.hideColumnLink(4);
    table.hideColumnLink(5);
    if (!"removed".equalsIgnoreCase(studySub.getStatus().getName()) && !"auto-removed".equalsIgnoreCase(studySub.getStatus().getName())) {
        table.addLink(resword.getString("add_new_event"), "CreateNewStudyEvent?" + CreateNewStudyEventServlet.INPUT_STUDY_SUBJECT_ID_FROM_VIEWSUBJECT + "=" + studySub.getId());
    }
    HashMap args = new HashMap();
    args.put("id", new Integer(studySubId).toString());
    table.setQuery("ViewStudySubject", args);
    table.setRows(allEventRows);
    table.computeDisplay();
    request.setAttribute("table", table);
    SubjectGroupMapDAO sgmdao = new SubjectGroupMapDAO(sm.getDataSource());
    ArrayList groupMaps = (ArrayList) sgmdao.findAllByStudySubject(studySubId);
    request.setAttribute("groups", groupMaps);
    AuditEventDAO aedao = new AuditEventDAO(sm.getDataSource());
    ArrayList logs = aedao.findEventStatusLogByStudySubject(studySubId);
    UserAccountDAO udao = new UserAccountDAO(sm.getDataSource());
    ArrayList eventLogs = new ArrayList();
    for (int i = 0; i < logs.size(); i++) {
        AuditEventBean avb = (AuditEventBean) logs.get(i);
        StudyEventAuditBean sea = new StudyEventAuditBean();
        sea.setAuditEvent(avb);
        StudyEventBean se = (StudyEventBean) sedao.findByPK(avb.getEntityId());
        StudyEventDefinitionBean sed = (StudyEventDefinitionBean) seddao.findByPK(se.getStudyEventDefinitionId());
        sea.setDefinition(sed);
        String old = avb.getOldValue().trim();
        try {
            if (!StringUtil.isBlank(old)) {
                SubjectEventStatus oldStatus = SubjectEventStatus.get(new Integer(old).intValue());
                sea.setOldSubjectEventStatus(oldStatus);
            }
            String newValue = avb.getNewValue().trim();
            if (!StringUtil.isBlank(newValue)) {
                SubjectEventStatus newStatus = SubjectEventStatus.get(new Integer(newValue).intValue());
                sea.setNewSubjectEventStatus(newStatus);
            }
        } catch (NumberFormatException e) {
            // TODO Auto-generated catch block
            e.printStackTrace();
        // logger.warning("^^^ caught NFE");
        }
        UserAccountBean updater = (UserAccountBean) udao.findByPK(avb.getUserId());
        sea.setUpdater(updater);
        eventLogs.add(sea);
    }
    // logger.warning("^^^ finished iteration");
    request.setAttribute("eventLogs", eventLogs);
    forwardPage(Page.SIGN_STUDY_SUBJECT);
}

Example 49 with UserAccountDAO

use of org.akaza.openclinica.dao.login.UserAccountDAO in project OpenClinica by OpenClinica.

the class RemoveSiteServlet method processRequest.

@Override
public void processRequest() throws Exception {
    StudyDAO sdao = new StudyDAO(sm.getDataSource());
    String idString = request.getParameter("id");
    logger.info("site id:" + idString);
    int siteId = Integer.valueOf(idString.trim()).intValue();
    StudyBean study = (StudyBean) sdao.findByPK(siteId);
    if (currentStudy.getId() != study.getParentStudyId()) {
        addPageMessage(respage.getString("no_have_correct_privilege_current_study") + " " + respage.getString("change_active_study_or_contact"));
        forwardPage(Page.MENU_SERVLET);
        return;
    }
    // find all user and roles
    UserAccountDAO udao = new UserAccountDAO(sm.getDataSource());
    ArrayList userRoles = udao.findAllByStudyId(siteId);
    // find all subjects
    StudySubjectDAO ssdao = new StudySubjectDAO(sm.getDataSource());
    ArrayList subjects = ssdao.findAllByStudy(study);
    // find all events
    StudyEventDefinitionDAO sefdao = new StudyEventDefinitionDAO(sm.getDataSource());
    ArrayList definitions = sefdao.findAllByStudy(study);
    String action = request.getParameter("action");
    if (StringUtil.isBlank(idString)) {
        addPageMessage(respage.getString("please_choose_a_site_to_remove"));
        forwardPage(Page.SITE_LIST_SERVLET);
    } else {
        if ("confirm".equalsIgnoreCase(action)) {
            request.setAttribute("siteToRemove", study);
            request.setAttribute("userRolesToRemove", userRoles);
            request.setAttribute("subjectsToRemove", subjects);
            forwardPage(Page.REMOVE_SITE);
        } else {
            logger.info("submit to remove the site");
            // change all statuses to unavailable
            StudyDAO studao = new StudyDAO(sm.getDataSource());
            study.setOldStatus(study.getStatus());
            study.setStatus(Status.DELETED);
            study.setUpdater(ub);
            study.setUpdatedDate(new Date());
            studao.update(study);
            // remove all users and roles
            for (int i = 0; i < userRoles.size(); i++) {
                StudyUserRoleBean role = (StudyUserRoleBean) userRoles.get(i);
                if (!role.getStatus().equals(Status.DELETED)) {
                    role.setStatus(Status.AUTO_DELETED);
                    role.setUpdater(ub);
                    role.setUpdatedDate(new Date());
                    // YW << So study_user_role table status_id field can be
                    // updated
                    udao.updateStudyUserRole(role, role.getUserName());
                }
            // YW 06-18-2007 >>
            }
            // YW << bug fix that current active study has been deleted
            if (study.getId() == currentStudy.getId()) {
                currentStudy.setStatus(Status.DELETED);
                // currentRole.setRole(Role.INVALID);
                currentRole.setStatus(Status.DELETED);
            }
            // remove all subjects
            for (int i = 0; i < subjects.size(); i++) {
                StudySubjectBean subject = (StudySubjectBean) subjects.get(i);
            }
            // remove all study_group
            StudyGroupDAO sgdao = new StudyGroupDAO(sm.getDataSource());
            SubjectGroupMapDAO sgmdao = new SubjectGroupMapDAO(sm.getDataSource());
            ArrayList groups = sgdao.findAllByStudy(study);
            for (int i = 0; i < groups.size(); i++) {
                StudyGroupBean group = (StudyGroupBean) groups.get(i);
                if (!group.getStatus().equals(Status.DELETED)) {
                    group.setStatus(Status.AUTO_DELETED);
                    group.setUpdater(ub);
                    group.setUpdatedDate(new Date());
                    sgdao.update(group);
                    // all subject_group_map
                    ArrayList subjectGroupMaps = sgmdao.findAllByStudyGroupId(group.getId());
                    for (int j = 0; j < subjectGroupMaps.size(); j++) {
                        SubjectGroupMapBean sgMap = (SubjectGroupMapBean) subjectGroupMaps.get(j);
                        if (!sgMap.getStatus().equals(Status.DELETED)) {
                            sgMap.setStatus(Status.AUTO_DELETED);
                            sgMap.setUpdater(ub);
                            sgMap.setUpdatedDate(new Date());
                            sgmdao.update(sgMap);
                        }
                    }
                }
            }
            // remove all events
            EventDefinitionCRFDAO edcdao = new EventDefinitionCRFDAO(sm.getDataSource());
            StudyEventDAO sedao = new StudyEventDAO(sm.getDataSource());
            for (int i = 0; i < subjects.size(); i++) {
                StudySubjectBean subject = (StudySubjectBean) subjects.get(i);
                if (!subject.getStatus().equals(Status.DELETED)) {
                    subject.setStatus(Status.AUTO_DELETED);
                    subject.setUpdater(ub);
                    subject.setUpdatedDate(new Date());
                    ssdao.update(subject);
                    ArrayList events = sedao.findAllByStudySubject(subject);
                    EventCRFDAO ecdao = new EventCRFDAO(sm.getDataSource());
                    for (int j = 0; j < events.size(); j++) {
                        StudyEventBean event = (StudyEventBean) events.get(j);
                        if (!event.getStatus().equals(Status.DELETED)) {
                            event.setStatus(Status.AUTO_DELETED);
                            event.setUpdater(ub);
                            event.setUpdatedDate(new Date());
                            sedao.update(event);
                            ArrayList eventCRFs = ecdao.findAllByStudyEvent(event);
                            ItemDataDAO iddao = new ItemDataDAO(sm.getDataSource());
                            for (int k = 0; k < eventCRFs.size(); k++) {
                                EventCRFBean eventCRF = (EventCRFBean) eventCRFs.get(k);
                                if (!eventCRF.getStatus().equals(Status.DELETED)) {
                                    eventCRF.setOldStatus(eventCRF.getStatus());
                                    eventCRF.setStatus(Status.AUTO_DELETED);
                                    eventCRF.setUpdater(ub);
                                    eventCRF.setUpdatedDate(new Date());
                                    ecdao.update(eventCRF);
                                    ArrayList itemDatas = iddao.findAllByEventCRFId(eventCRF.getId());
                                    for (int a = 0; a < itemDatas.size(); a++) {
                                        ItemDataBean item = (ItemDataBean) itemDatas.get(a);
                                        if (!item.getStatus().equals(Status.DELETED)) {
                                            item.setOldStatus(item.getStatus());
                                            item.setStatus(Status.AUTO_DELETED);
                                            item.setUpdater(ub);
                                            item.setUpdatedDate(new Date());
                                            iddao.update(item);
                                        }
                                    }
                                }
                            }
                        }
                    }
                }
            }
            // for subjects
            DatasetDAO datadao = new DatasetDAO(sm.getDataSource());
            ArrayList dataset = datadao.findAllByStudyId(study.getId());
            for (int i = 0; i < dataset.size(); i++) {
                DatasetBean data = (DatasetBean) dataset.get(i);
                if (!data.getStatus().equals(Status.DELETED)) {
                    data.setStatus(Status.AUTO_DELETED);
                    data.setUpdater(ub);
                    data.setUpdatedDate(new Date());
                    datadao.update(data);
                }
            }
            addPageMessage(respage.getString("this_site_has_been_removed_succesfully"));
            String fromListSite = (String) session.getAttribute("fromListSite");
            if (fromListSite != null && fromListSite.equals("yes") && currentRole.getRole().equals(Role.STUDYDIRECTOR)) {
                session.removeAttribute("fromListSite");
                forwardPage(Page.SITE_LIST_SERVLET);
            } else {
                session.removeAttribute("fromListSite");
                if (currentRole.getRole().equals(Role.ADMIN)) {
                    forwardPage(Page.STUDY_LIST_SERVLET);
                } else {
                    forwardPage(Page.SITE_LIST_SERVLET);
                }
            }
        }
    }
}

Example 50 with UserAccountDAO

use of org.akaza.openclinica.dao.login.UserAccountDAO in project OpenClinica by OpenClinica.

the class ManageStudyServlet method processRequest.

/*
     * (non-Javadoc)
     *
     * @see org.akaza.openclinica.control.core.SecureController#processRequest()
     */
@Override
protected void processRequest() throws Exception {
    // for the sake of testing a prototype; 2560
    if (!INSTRUCTIONS.isEmpty()) {
        INSTRUCTIONS.clear();
    }
    INSTRUCTIONS.add(restext.getString("director_coordinator_privileges_manage"));
    INSTRUCTIONS.add(restext.getString("side_tables_shows_last_modified"));
    request.setAttribute("instructions", INSTRUCTIONS);
    // show icon keys on the sidebar, and display the instructions and
    // alert messages fields
    request.setAttribute("showIcons", true);
    request.setAttribute("openIcons", true);
    request.setAttribute("openAlerts", true);
    request.setAttribute("openInstructions", true);
    // find last 5 modifed sites
    StudyDAO sdao = new StudyDAO(sm.getDataSource());
    // ArrayList sites = (ArrayList)
    // sdao.findAllByParentAndLimit(currentStudy.getId(),true);
    ArrayList allSites = (ArrayList) sdao.findAllByParent(currentStudy.getId());
    ArrayList sites = new ArrayList();
    for (int i = 0; i < allSites.size(); i++) {
        sites.add(allSites.get(i));
        if (i == 5) {
            break;
        }
    }
    request.setAttribute("sites", sites);
    request.setAttribute("sitesCount", new Integer(sites.size()));
    request.setAttribute("allSitesCount", new Integer(allSites.size()));
    // BWP 3057: add study name to JSP
    if (currentStudy != null) {
        request.setAttribute("studyIdentifier", currentStudy.getIdentifier());
    }
    StudyEventDefinitionDAO edao = new StudyEventDefinitionDAO(sm.getDataSource());
    ArrayList seds = (ArrayList) edao.findAllByStudyAndLimit(currentStudy.getId());
    ArrayList allSeds = edao.findAllByStudy(currentStudy);
    request.setAttribute("seds", seds);
    request.setAttribute("sedsCount", new Integer(seds.size()));
    request.setAttribute("allSedsCount", new Integer(allSeds.size()));
    UserAccountDAO udao = new UserAccountDAO(sm.getDataSource());
    ArrayList users = udao.findAllUsersByStudyIdAndLimit(currentStudy.getId(), true);
    ArrayList allUsers = udao.findAllUsersByStudy(currentStudy.getId());
    request.setAttribute("users", users);
    request.setAttribute("usersCount", new Integer(users.size()));
    request.setAttribute("allUsersCount", new Integer(allUsers.size()));
    StudySubjectDAO ssdao = new StudySubjectDAO(sm.getDataSource());
    // ArrayList subjects = (ArrayList)
    // ssdao.findAllByStudyIdAndLimit(currentStudy.getId(),true);
    ArrayList allSubjects = ssdao.findAllByStudyId(currentStudy.getId());
    ArrayList subjects = new ArrayList();
    for (int i = 0; i < allSubjects.size(); i++) {
        subjects.add(allSubjects.get(i));
        if (i == 5) {
            break;
        }
    }
    request.setAttribute("subs", subjects);
    request.setAttribute("subsCount", new Integer(subjects.size()));
    request.setAttribute("allSubsCount", new Integer(allSubjects.size()));
    // added tbh, 9-21-2005
    // AuditEventDAO aedao = new AuditEventDAO(sm.getDataSource());
    // ArrayList audits = (ArrayList)
    // aedao.findAllByStudyIdAndLimit(currentStudy.getId());
    // request.setAttribute("audits", audits);
    resetPanel();
    if (allSubjects.size() > 0) {
        setToPanel("Subjects", new Integer(allSubjects.size()).toString());
    }
    if (allUsers.size() > 0) {
        setToPanel("Users", new Integer(allUsers.size()).toString());
    }
    if (allSites.size() > 0) {
        setToPanel("Sites", new Integer(allSites.size()).toString());
    }
    if (allSeds.size() > 0) {
        setToPanel("Event Definitions", new Integer(allSeds.size()).toString());
    }
    String proto = request.getParameter("proto");
    if (proto == null || "".equalsIgnoreCase(proto)) {
        forwardPage(Page.MANAGE_STUDY);
    } else {
        forwardPage(Page.MANAGE_STUDY_BODY);
    }
}