use of org.akaza.openclinica.dao.submit.CRFVersionDAO in project OpenClinica by OpenClinica.
the class DataEntryServlet method createEventCRF.
/**
* Creates a new Event CRF or update the exsiting one, that is, an event CRF can be created but not item data yet, in this case, still consider it is not
* started(called uncompleted before)
* @param request TODO
* @param fp TODO
*
* @return
* @throws Exception
*/
private EventCRFBean createEventCRF(HttpServletRequest request, FormProcessor fp) throws InconsistentStateException {
locale = LocaleResolver.getLocale(request);
// < resmessage =
// ResourceBundle.getBundle("org.akaza.openclinica.i18n.page_messages",
// locale);
// < restext =
// ResourceBundle.getBundle("org.akaza.openclinica.i18n.notes",locale);
// <
// resexception=ResourceBundle.getBundle(
// "org.akaza.openclinica.i18n.exceptions",locale);
UserAccountBean ub = (UserAccountBean) request.getSession().getAttribute(USER_BEAN_NAME);
StudyBean currentStudy = (StudyBean) request.getSession().getAttribute("study");
EventCRFBean ecb;
EventCRFDAO ecdao = new EventCRFDAO(getDataSource());
int crfVersionId = fp.getInt(INPUT_CRF_VERSION_ID);
LOGGER.trace("***FOUND*** crfversionid: " + crfVersionId);
int studyEventId = fp.getInt(INPUT_STUDY_EVENT_ID);
int eventDefinitionCRFId = fp.getInt(INPUT_EVENT_DEFINITION_CRF_ID);
int subjectId = fp.getInt(INPUT_SUBJECT_ID);
int eventCRFId = fp.getInt(INPUT_EVENT_CRF_ID);
LOGGER.trace("look specifically wrt event crf id: " + eventCRFId);
LOGGER.trace("Creating event CRF. Study id: " + currentStudy.getId() + "; CRF Version id: " + crfVersionId + "; Study Event id: " + studyEventId + "; Event Definition CRF id: " + eventDefinitionCRFId + "; Subject: " + subjectId);
StudySubjectDAO ssdao = new StudySubjectDAO(getDataSource());
StudySubjectBean ssb = ssdao.findBySubjectIdAndStudy(subjectId, currentStudy);
if (ssb.getId() <= 0) {
LOGGER.trace("throwing ISE with study subject bean id of " + ssb.getId());
// "begin_data_entry_without_event_but_subject"));
throw new InconsistentStateException(Page.LIST_STUDY_SUBJECTS_SERVLET, resexception.getString("begin_data_entry_without_event_but_subject"));
}
StudyEventDefinitionDAO seddao = new StudyEventDefinitionDAO(getDataSource());
StudyEventDefinitionBean sedb = seddao.findByEventDefinitionCRFId(eventDefinitionCRFId);
// logger.trace("study event definition:" + sedb.getId());
if (sedb.getId() <= 0) {
addPageMessage(resexception.getString("begin_data_entry_without_event_but_study"), request);
throw new InconsistentStateException(Page.LIST_STUDY_SUBJECTS_SERVLET, resexception.getString("begin_data_entry_without_event_but_study"));
}
CRFVersionDAO cvdao = new CRFVersionDAO(getDataSource());
EntityBean eb = cvdao.findByPK(crfVersionId);
if (eb.getId() <= 0) {
// addPageMessage(resexception.getString("begin_data_entry_without_event_but_CRF"));
throw new InconsistentStateException(Page.LIST_STUDY_SUBJECTS_SERVLET, resexception.getString("begin_data_entry_without_event_but_CRF"));
}
StudyEventDAO sedao = new StudyEventDAO(getDataSource());
StudyEventBean sEvent = (StudyEventBean) sedao.findByPK(studyEventId);
StudyBean studyWithSED = currentStudy;
if (currentStudy.getParentStudyId() > 0) {
studyWithSED = new StudyBean();
studyWithSED.setId(currentStudy.getParentStudyId());
}
AuditableEntityBean aeb = sedao.findByPKAndStudy(studyEventId, studyWithSED);
if (aeb.getId() <= 0) {
addPageMessage(resexception.getString("begin_data_entry_without_event_but_especified_event"), request);
throw new InconsistentStateException(Page.LIST_STUDY_SUBJECTS_SERVLET, resexception.getString("begin_data_entry_without_event_but_especified_event"));
}
ecb = new EventCRFBean();
if (eventCRFId == 0) {
// no event CRF created yet
ArrayList ecList = ecdao.findByEventSubjectVersion(sEvent, ssb, (CRFVersionBean) eb);
if (ecList.size() > 0) {
ecb = (EventCRFBean) ecList.get(0);
} else {
ecb.setAnnotations("");
ecb.setCreatedDate(new Date());
ecb.setCRFVersionId(crfVersionId);
if (currentStudy.getStudyParameterConfig().getInterviewerNameDefault().equals("blank")) {
ecb.setInterviewerName("");
} else {
// default will be event's owner name
ecb.setInterviewerName(sEvent.getOwner().getName());
}
if (!currentStudy.getStudyParameterConfig().getInterviewDateDefault().equals("blank")) {
if (sEvent.getDateStarted() != null) {
// default
ecb.setDateInterviewed(sEvent.getDateStarted());
// date
} else {
// logger.trace("evnet start date is null, so date
// interviewed is null");
ecb.setDateInterviewed(null);
}
} else {
ecb.setDateInterviewed(null);
// logger.trace("date interviewed is
// null,getInterviewDateDefault() is blank");
}
// ecb.setOwnerId(ub.getId());
// above depreciated, try without it, tbh
ecb.setOwner(ub);
ecb.setStatus(Status.AVAILABLE);
ecb.setCompletionStatusId(1);
ecb.setStudySubjectId(ssb.getId());
ecb.setStudyEventId(studyEventId);
ecb.setValidateString("");
ecb.setValidatorAnnotations("");
ecb = (EventCRFBean) ecdao.create(ecb);
LOGGER.debug("*********CREATED EVENT CRF");
}
} else {
// there is an event CRF already, only need to update
ecb = (EventCRFBean) ecdao.findByPK(eventCRFId);
ecb.setCRFVersionId(crfVersionId);
ecb.setUpdatedDate(new Date());
ecb.setUpdater(ub);
ecb = updateECB(sEvent, request);
ecb = (EventCRFBean) ecdao.update(ecb);
}
if (ecb.getId() <= 0) {
addPageMessage(resexception.getString("new_event_CRF_not_created"), request);
throw new InconsistentStateException(Page.LIST_STUDY_SUBJECTS_SERVLET, resexception.getString("new_event_CRF_not_created"));
} else {
if (sEvent.getSubjectEventStatus().equals(SubjectEventStatus.SIGNED)) {
sEvent.setSubjectEventStatus(SubjectEventStatus.COMPLETED);
sEvent.setUpdater(ub);
sEvent.setUpdatedDate(new Date());
sedao.update(sEvent);
} else {
sEvent.setSubjectEventStatus(SubjectEventStatus.DATA_ENTRY_STARTED);
sEvent.setUpdater(ub);
sEvent.setUpdatedDate(new Date());
sedao.update(sEvent);
}
}
return ecb;
}
use of org.akaza.openclinica.dao.submit.CRFVersionDAO in project OpenClinica by OpenClinica.
the class ViewStudySubjectAuditLogServlet method processRequest.
@Override
public void processRequest() throws Exception {
StudySubjectDAO subdao = new StudySubjectDAO(sm.getDataSource());
SubjectDAO sdao = new SubjectDAO(sm.getDataSource());
AuditDAO adao = new AuditDAO(sm.getDataSource());
FormProcessor fp = new FormProcessor(request);
StudyEventDAO sedao = new StudyEventDAO(sm.getDataSource());
StudyEventDefinitionDAO seddao = new StudyEventDefinitionDAO(sm.getDataSource());
EventDefinitionCRFDAO edcdao = new EventDefinitionCRFDAO(sm.getDataSource());
EventCRFDAO ecdao = new EventCRFDAO(sm.getDataSource());
StudyDAO studydao = new StudyDAO(sm.getDataSource());
CRFDAO cdao = new CRFDAO(sm.getDataSource());
CRFVersionDAO cvdao = new CRFVersionDAO(sm.getDataSource());
ArrayList studySubjectAudits = new ArrayList();
ArrayList eventCRFAudits = new ArrayList();
ArrayList studyEventAudits = new ArrayList();
ArrayList allDeletedEventCRFs = new ArrayList();
String attachedFilePath = Utils.getAttachedFilePath(currentStudy);
// studySubjectId
int studySubId = fp.getInt("id", true);
request.setAttribute("id", studySubId);
if (studySubId == 0) {
addPageMessage(respage.getString("please_choose_a_subject_to_view"));
forwardPage(Page.LIST_STUDY_SUBJECTS);
} else {
StudySubjectBean studySubject = (StudySubjectBean) subdao.findByPK(studySubId);
StudyBean study = (StudyBean) studydao.findByPK(studySubject.getStudyId());
// Check if this StudySubject would be accessed from the Current Study
if (studySubject.getStudyId() != currentStudy.getId()) {
if (currentStudy.getParentStudyId() > 0) {
addPageMessage(respage.getString("no_have_correct_privilege_current_study") + " " + respage.getString("change_active_study_or_contact"));
forwardPage(Page.MENU_SERVLET);
return;
} else {
// The SubjectStudy is not belong to currentstudy and current study is not a site.
Collection sites = studydao.findOlnySiteIdsByStudy(currentStudy);
if (!sites.contains(study.getId())) {
addPageMessage(respage.getString("no_have_correct_privilege_current_study") + " " + respage.getString("change_active_study_or_contact"));
forwardPage(Page.MENU_SERVLET);
return;
}
}
}
request.setAttribute("studySub", studySubject);
SubjectBean subject = (SubjectBean) sdao.findByPK(studySubject.getSubjectId());
StudyParameterValueDAO spvdao = new StudyParameterValueDAO(sm.getDataSource());
study.getStudyParameterConfig().setCollectDob(spvdao.findByHandleAndStudy(study.getId(), "collectDob").getValue());
String collectdob = "used";
if (study.getStudyParameterConfig().getCollectDob().equals("2")) {
collectdob = "yearOnly";
} else if (study.getStudyParameterConfig().getCollectDob().equals("3")) {
collectdob = "notUsed";
} else if (study.getStudyParameterConfig().getCollectDob().equals("1")) {
collectdob = "used";
}
request.setAttribute("collectdob", collectdob);
request.setAttribute("subject", subject);
request.setAttribute("study", study);
/* Show both study subject and subject audit events together */
// Study subject value changed
Collection studySubjectAuditEvents = adao.findStudySubjectAuditEvents(studySubject.getId());
// integer values.
for (Iterator iterator = studySubjectAuditEvents.iterator(); iterator.hasNext(); ) {
AuditBean auditBean = (AuditBean) iterator.next();
if (auditBean.getAuditEventTypeId() == 3) {
auditBean.setOldValue(Status.get(Integer.parseInt(auditBean.getOldValue())).getName());
auditBean.setNewValue(Status.get(Integer.parseInt(auditBean.getNewValue())).getName());
}
}
studySubjectAudits.addAll(studySubjectAuditEvents);
// Global subject value changed
studySubjectAudits.addAll(adao.findSubjectAuditEvents(subject.getId()));
studySubjectAudits.addAll(adao.findStudySubjectGroupAssignmentAuditEvents(studySubject.getId()));
request.setAttribute("studySubjectAudits", studySubjectAudits);
// Get the list of events
ArrayList events = sedao.findAllByStudySubject(studySubject);
for (int i = 0; i < events.size(); i++) {
// Link study event definitions
StudyEventBean studyEvent = (StudyEventBean) events.get(i);
studyEvent.setStudyEventDefinition((StudyEventDefinitionBean) seddao.findByPK(studyEvent.getStudyEventDefinitionId()));
// Link event CRFs
studyEvent.setEventCRFs(ecdao.findAllByStudyEvent(studyEvent));
// Find deleted Event CRFs
List deletedEventCRFs = adao.findDeletedEventCRFsFromAuditEventByEventCRFStatus(studyEvent.getId());
allDeletedEventCRFs.addAll(deletedEventCRFs);
logger.info("deletedEventCRFs size[" + deletedEventCRFs.size() + "]");
}
for (int i = 0; i < events.size(); i++) {
StudyEventBean studyEvent = (StudyEventBean) events.get(i);
studyEventAudits.addAll(adao.findStudyEventAuditEvents(studyEvent.getId()));
ArrayList eventCRFs = studyEvent.getEventCRFs();
for (int j = 0; j < eventCRFs.size(); j++) {
// Link CRF and CRF Versions
EventCRFBean eventCRF = (EventCRFBean) eventCRFs.get(j);
eventCRF.setCrfVersion((CRFVersionBean) cvdao.findByPK(eventCRF.getCRFVersionId()));
eventCRF.setCrf(cdao.findByVersionId(eventCRF.getCRFVersionId()));
// Get the event crf audits
eventCRFAudits.addAll(adao.findEventCRFAuditEventsWithItemDataType(eventCRF.getId()));
logger.info("eventCRFAudits size [" + eventCRFAudits.size() + "] eventCRF id [" + eventCRF.getId() + "]");
}
}
ItemDataDAO itemDataDao = new ItemDataDAO(sm.getDataSource());
for (Object o : eventCRFAudits) {
AuditBean ab = (AuditBean) o;
if (ab.getAuditTable().equalsIgnoreCase("item_data")) {
ItemDataBean idBean = (ItemDataBean) itemDataDao.findByPK(ab.getEntityId());
ab.setOrdinal(idBean.getOrdinal());
}
}
request.setAttribute("events", events);
request.setAttribute("eventCRFAudits", eventCRFAudits);
request.setAttribute("studyEventAudits", studyEventAudits);
request.setAttribute("allDeletedEventCRFs", allDeletedEventCRFs);
request.setAttribute("attachedFilePath", attachedFilePath);
forwardPage(Page.VIEW_STUDY_SUBJECT_AUDIT);
}
}
use of org.akaza.openclinica.dao.submit.CRFVersionDAO in project OpenClinica by OpenClinica.
the class ViewSectionDataEntryRESTUrlServlet method processRequest.
@Override
public void processRequest(HttpServletRequest request, HttpServletResponse response) throws Exception {
FormProcessor fp = new FormProcessor(request);
StudyBean currentStudy = (StudyBean) request.getSession().getAttribute("study");
EventCRFBean ecb = (EventCRFBean) request.getAttribute(INPUT_EVENT_CRF);
SectionBean sb = (SectionBean) request.getAttribute(SECTION_BEAN);
boolean isSubmitted = false;
EventDefinitionCRFBean edcb = (EventDefinitionCRFBean) request.getAttribute(EVENT_DEF_CRF_BEAN);
if (!fp.getString("exitTo").equals("")) {
request.setAttribute("exitTo", request.getContextPath() + "/" + fp.getString("exitTo"));
}
int crfVersionId = fp.getInt("crfVersionId", true);
Integer sectionId = (Integer) request.getAttribute("sectionId");
if (sectionId == null || sectionId == 0) {
sectionId = new Integer(1);
}
int eventCRFId = fp.getInt(EVENT_CRF_ID, true);
int studySubjectId = fp.getInt("studySubjectId", true);
String action = fp.getString("action");
HttpSession session = request.getSession();
String fromResolvingNotes = fp.getString("fromResolvingNotes", true);
if (StringUtil.isBlank(fromResolvingNotes)) {
session.removeAttribute(ViewNotesServlet.WIN_LOCATION);
session.removeAttribute(ViewNotesServlet.NOTES_TABLE);
}
// Added for
request.setAttribute("studySubjectId", studySubjectId + "");
// Mantis
// Issue
// 2268
// Added
request.setAttribute("crfListPage", fp.getString("crfListPage"));
// for
// Mantis
// Issue
// 2268
// Added for
request.setAttribute("eventId", fp.getString("eventId"));
// Mantis
// Issue
// 2268
// YW <<
int sedId = fp.getInt("sedId");
request.setAttribute("sedId", sedId + "");
int crfId = fp.getInt("crfId");
// BWP>> ... try to get crfId from crfVersionId
if (crfId == 0 && crfVersionId > 0) {
CRFVersionDAO crfVDao = new CRFVersionDAO(getDataSource());
CRFVersionBean crvVBean = (CRFVersionBean) crfVDao.findByPK(crfVersionId);
if (crvVBean != null) {
crfId = crvVBean.getCrfId();
}
}
// YW >>
// int eventDefinitionCRFId = fp.getInt("eventDefinitionCRFId");
Integer eventDefinitionCRFId = (Integer) (request.getAttribute("eventDefinitionCRFId"));
EventDefinitionCRFDAO eventCrfDao = new EventDefinitionCRFDAO(getDataSource());
edcb = (EventDefinitionCRFBean) eventCrfDao.findByPK(eventDefinitionCRFId);
if (eventCRFId == 0 && edcb.getStudyId() != currentStudy.getParentStudyId() && edcb.getStudyId() != currentStudy.getId()) {
addPageMessage(respage.getString("no_have_correct_privilege_current_study") + " " + respage.getString("change_study_contact_sysadmin"), request);
throw new InsufficientPermissionException(Page.MENU_SERVLET, resexception.getString("not_director"), "1");
}
if (crfId == 0 && eventDefinitionCRFId > 0) {
// eventCrfDao.findByPK(eventDefinitionCRFId);
if (edcb != null) {
crfId = edcb.getCrfId();
}
}
request.setAttribute("crfId", crfId + "");
request.setAttribute("eventDefinitionCRFId", eventDefinitionCRFId + "");
String printVersion = fp.getString("print");
// BWP>> this has to be removed for CRFs that do not display an
// interviewdate
// for a particular event
session.removeAttribute("presetValues");
EventCRFDAO ecdao = new EventCRFDAO(getDataSource());
SectionDAO sdao = new SectionDAO(getDataSource());
String age = "";
if (sectionId == 0 && crfVersionId == 0 && eventCRFId == 0) {
addPageMessage(respage.getString("please_choose_a_CRF_to_view"), request);
// forwardPage(Page.SUBMIT_DATA_SERVLET);
forwardPage(Page.LIST_STUDY_SUBJECTS_SERVLET, request, response);
// >> changed tbh, 06/2009
return;
}
if (studySubjectId > 0) {
StudySubjectDAO ssdao = new StudySubjectDAO(getDataSource());
StudySubjectBean sub = (StudySubjectBean) ssdao.findByPK(studySubjectId);
request.setAttribute("studySubject", sub);
}
if (eventCRFId > 0) {
// for event crf, the input crfVersionId from url =0
ecb = (EventCRFBean) ecdao.findByPK(eventCRFId);
StudyEventDAO sedao = new StudyEventDAO(getDataSource());
StudyEventBean event = (StudyEventBean) sedao.findByPK(ecb.getStudyEventId());
// event.getSubjectEventStatus().getName());
if (event.getSubjectEventStatus().equals(SubjectEventStatus.LOCKED)) {
request.setAttribute("isLocked", "yes");
// System.out.println("this event crf is locked");
} else // @pgawade 28-Aug-2012 Reverted the change no. 2 in
// https://issuetracker.openclinica.com/view.php?id=12343#c56722
{
request.setAttribute("isLocked", "no");
}
if (studySubjectId <= 0) {
studySubjectId = event.getStudySubjectId();
request.setAttribute("studySubjectId", studySubjectId + "");
}
// Get the status/number of item discrepancy notes
DiscrepancyNoteDAO dndao = new DiscrepancyNoteDAO(getDataSource());
ArrayList<DiscrepancyNoteBean> allNotes = new ArrayList<DiscrepancyNoteBean>();
List<DiscrepancyNoteBean> eventCrfNotes = new ArrayList<DiscrepancyNoteBean>();
List<DiscrepancyNoteThread> noteThreads = new ArrayList<DiscrepancyNoteThread>();
// if (eventCRFId > 0) {
// this method finds only parent notes
allNotes = dndao.findAllTopNotesByEventCRF(eventCRFId);
// add interviewer.jsp related notes to this Collection
eventCrfNotes = dndao.findOnlyParentEventCRFDNotesFromEventCRF(ecb);
if (!eventCrfNotes.isEmpty()) {
allNotes.addAll(eventCrfNotes);
// make sure a necessary request attribute "hasNameNote" is set
// properly
this.setAttributeForInterviewerDNotes(eventCrfNotes, request);
}
// }
// Create disc note threads out of the various notes
DiscrepancyNoteUtil dNoteUtil = new DiscrepancyNoteUtil();
noteThreads = dNoteUtil.createThreadsOfParents(allNotes, getDataSource(), currentStudy, null, -1, true);
// variables that provide values for the CRF discrepancy note header
int updatedNum = 0;
int openNum = 0;
int closedNum = 0;
int resolvedNum = 0;
int notAppNum = 0;
DiscrepancyNoteBean tempBean;
for (DiscrepancyNoteThread dnThread : noteThreads) {
/*
* 3014: do not count parent beans, only the last child disc
* note of the thread.
*/
tempBean = dnThread.getLinkedNoteList().getLast();
if (tempBean != null) {
if (ResolutionStatus.UPDATED.equals(tempBean.getResStatus())) {
updatedNum++;
} else if (ResolutionStatus.OPEN.equals(tempBean.getResStatus())) {
openNum++;
} else if (ResolutionStatus.CLOSED.equals(tempBean.getResStatus())) {
// if (dn.getParentDnId() > 0){
closedNum++;
// }
} else if (ResolutionStatus.RESOLVED.equals(tempBean.getResStatus())) {
// if (dn.getParentDnId() > 0){
resolvedNum++;
// }
} else if (ResolutionStatus.NOT_APPLICABLE.equals(tempBean.getResStatus())) {
notAppNum++;
}
}
}
request.setAttribute("updatedNum", updatedNum + "");
request.setAttribute("openNum", openNum + "");
request.setAttribute("closedNum", closedNum + "");
request.setAttribute("resolvedNum", resolvedNum + "");
request.setAttribute("notAppNum", notAppNum + "");
DisplayTableOfContentsBean displayBean = TableOfContentsServlet.getDisplayBean(ecb, getDataSource(), currentStudy);
// Make sure that the interviewDate in the eventCRF is properly
// formatted
// for viewSectionDataEntry.jsp --> interviewer.jsp
// int studyEventId = (Integer)request.getAttribute("studyEvent");
// SimpleDateFormat formatter = new SimpleDateFormat("MM/dd/yyyy");
//
Date tmpDate = displayBean.getEventCRF().getDateInterviewed();
String formattedInterviewerDate;
try {
DateFormat local_df = new SimpleDateFormat(resformat.getString("date_format_string"), ResourceBundleProvider.getLocale());
formattedInterviewerDate = local_df.format(tmpDate);
} catch (Exception e) {
formattedInterviewerDate = "";
}
HashMap presetVals = (HashMap) session.getAttribute("presetValues");
if (presetVals == null) {
presetVals = new HashMap();
session.setAttribute("presetValues", presetVals);
}
presetVals.put("interviewDate", formattedInterviewerDate);
request.setAttribute("toc", displayBean);
ArrayList sections = displayBean.getSections();
request.setAttribute("sectionNum", sections.size() + "");
if (!sections.isEmpty()) {
if (sectionId == 0) {
SectionBean firstSec = (SectionBean) sections.get(0);
sectionId = firstSec.getId();
}
} else {
addPageMessage(respage.getString("there_are_no_sections_ins_this_CRF"), request);
// forwardPage(Page.SUBMIT_DATA_SERVLET);
forwardPage(Page.LIST_STUDY_SUBJECTS_SERVLET, request, response);
// >> changed tbh, 06/2009
return;
}
} else if (crfVersionId > 0) {
// for viewing blank CRF
DisplayTableOfContentsBean displayBean = ViewTableOfContentServlet.getDisplayBean(getDataSource(), crfVersionId);
request.setAttribute("toc", displayBean);
ArrayList sections = displayBean.getSections();
request.setAttribute("sectionNum", sections.size() + "");
if (!sections.isEmpty()) {
if (sectionId == 0) {
SectionBean firstSec = (SectionBean) sections.get(0);
sectionId = firstSec.getId();
}
} else {
addPageMessage(respage.getString("there_are_no_sections_ins_this_CRF_version"), request);
if (eventCRFId == 0) {
forwardPage(Page.CRF_LIST_SERVLET, request, response);
} else {
// forwardPage(Page.SUBMIT_DATA_SERVLET);
forwardPage(Page.LIST_STUDY_SUBJECTS_SERVLET, request, response);
// >> changed tbh, 06/2009
}
return;
}
}
sb = (SectionBean) sdao.findByPK(sectionId);
if (eventCRFId == 0) {
ecb = new EventCRFBean();
ecb.setCRFVersionId(sb.getCRFVersionId());
if (currentStudy.getParentStudyId() > 0) {
// this is a site,find parent
StudyDAO studydao = new StudyDAO(getDataSource());
StudyBean parentStudy = (StudyBean) studydao.findByPK(currentStudy.getParentStudyId());
request.setAttribute("studyTitle", parentStudy.getName());
request.setAttribute("siteTitle", currentStudy.getName());
} else {
request.setAttribute("studyTitle", currentStudy.getName());
}
} else {
ecb = (EventCRFBean) ecdao.findByPK(eventCRFId);
request.setAttribute(INPUT_EVENT_CRF, ecb);
request.setAttribute(SECTION_BEAN, sb);
// This is the StudySubjectBean
StudySubjectDAO ssdao = new StudySubjectDAO(getDataSource());
StudySubjectBean sub = (StudySubjectBean) ssdao.findByPK(ecb.getStudySubjectId());
// This is the SubjectBean
SubjectDAO subjectDao = new SubjectDAO(getDataSource());
int subjectId = sub.getSubjectId();
int studyId = sub.getStudyId();
SubjectBean subject = (SubjectBean) subjectDao.findByPK(subjectId);
// Let us process the age
if (currentStudy.getStudyParameterConfig().getCollectDob().equals("1")) {
StudyEventDAO sedao = new StudyEventDAO(getDataSource());
StudyEventBean se = (StudyEventBean) sedao.findByPK(ecb.getStudyEventId());
StudyEventDefinitionDAO seddao = new StudyEventDefinitionDAO(getDataSource());
StudyEventDefinitionBean sed = (StudyEventDefinitionBean) seddao.findByPK(se.getStudyEventDefinitionId());
se.setStudyEventDefinition(sed);
request.setAttribute("studyEvent", se);
// YW 11-16-2007 enrollment-date is used for computing age
age = Utils.getInstacne().processAge(sub.getEnrollmentDate(), subject.getDateOfBirth());
}
// Get the study then the parent study
StudyDAO studydao = new StudyDAO(getDataSource());
StudyBean study = (StudyBean) studydao.findByPK(studyId);
if (study.getParentStudyId() > 0) {
// this is a site,find parent
StudyBean parentStudy = (StudyBean) studydao.findByPK(study.getParentStudyId());
request.setAttribute("studyTitle", parentStudy.getName());
request.setAttribute("siteTitle", study.getName());
} else {
request.setAttribute("studyTitle", study.getName());
}
request.setAttribute("studySubject", sub);
request.setAttribute("subject", subject);
request.setAttribute("age", age);
}
// FormBeanUtil formUtil = new FormBeanUtil();
// DisplaySectionBean newDisplayBean = new DisplaySectionBean();
boolean hasItemGroup = false;
// we will look into db to see if any repeating items for this CRF
// section
ItemGroupDAO igdao = new ItemGroupDAO(getDataSource());
List<ItemGroupBean> itemGroups = igdao.findLegitGroupBySectionId(sectionId);
if (!itemGroups.isEmpty()) {
hasItemGroup = true;
}
// if the List of DisplayFormGroups is empty, then the servlet defers to
// the prior method
// of generating a DisplaySectionBean for the application
DisplaySectionBean dsb;
// want to get displayBean with grouped and ungrouped items
request.setAttribute(EVENT_DEF_CRF_BEAN, edcb);
request.setAttribute(INPUT_EVENT_CRF, ecb);
request.setAttribute(SECTION_BEAN, sb);
dsb = super.getDisplayBean(hasItemGroup, false, request, isSubmitted);
FormDiscrepancyNotes discNotes = (FormDiscrepancyNotes) session.getAttribute(AddNewSubjectServlet.FORM_DISCREPANCY_NOTES_NAME);
if (discNotes == null) {
discNotes = new FormDiscrepancyNotes();
session.setAttribute(AddNewSubjectServlet.FORM_DISCREPANCY_NOTES_NAME, discNotes);
}
/*
* if (hasItemGroup) { //
* dsb.setDisplayItemGroups(newDisplayBean.getDisplayItemGroups());
* request.setAttribute("new_table", true); }
*/
// If the Horizontal type table will be used, then set the
// DisplaySectionBean's
// DisplayFormGroups List to the ones we have just generated
// @pgawade 30-May-2012 Fix for issue 13963 - added an extra parameter
// 'isSubmitted' to method createItemWithGroups
List<DisplayItemWithGroupBean> displayItemWithGroups = super.createItemWithGroups(dsb, hasItemGroup, eventDefinitionCRFId, request, isSubmitted);
dsb.setDisplayItemGroups(displayItemWithGroups);
super.populateNotesWithDBNoteCounts(discNotes, dsb, request);
if (fp.getString("fromViewNotes") != null && "1".equals(fp.getString("fromViewNotes"))) {
request.setAttribute("fromViewNotes", fp.getString("fromViewNotes"));
} else {
session.removeAttribute("viewNotesURL");
}
if ("saveNotes".equalsIgnoreCase(action)) {
LOGGER.info("33333how many group rows:" + dsb.getDisplayItemGroups().size());
// let's save notes for the blank items
DiscrepancyNoteDAO dndao = new DiscrepancyNoteDAO(getDataSource());
discNotes = (FormDiscrepancyNotes) session.getAttribute(AddNewSubjectServlet.FORM_DISCREPANCY_NOTES_NAME);
for (int i = 0; i < dsb.getDisplayItemGroups().size(); i++) {
DisplayItemWithGroupBean diwb = dsb.getDisplayItemGroups().get(i);
if (diwb.isInGroup()) {
List<DisplayItemGroupBean> dgbs = diwb.getItemGroups();
LOGGER.info("dgbs size: " + dgbs.size());
for (int j = 0; j < dgbs.size(); j++) {
DisplayItemGroupBean displayGroup = dgbs.get(j);
List<DisplayItemBean> items = displayGroup.getItems();
LOGGER.info("item size: " + items.size());
for (DisplayItemBean displayItem : items) {
String inputName = getGroupItemInputName(displayGroup, j, displayItem);
LOGGER.info("inputName:" + inputName);
LOGGER.info("item data id:" + displayItem.getData().getId());
AddNewSubjectServlet.saveFieldNotes(inputName, discNotes, dndao, displayItem.getData().getId(), "itemData", currentStudy);
}
}
} else {
DisplayItemBean dib = diwb.getSingleItem();
// TODO work on this line
String inputName = getInputName(dib);
AddNewSubjectServlet.saveFieldNotes(inputName, discNotes, dndao, dib.getData().getId(), DiscrepancyNoteBean.ITEM_DATA, currentStudy);
ArrayList childItems = dib.getChildren();
for (int j = 0; j < childItems.size(); j++) {
DisplayItemBean child = (DisplayItemBean) childItems.get(j);
inputName = getInputName(child);
AddNewSubjectServlet.saveFieldNotes(inputName, discNotes, dndao, dib.getData().getId(), DiscrepancyNoteBean.ITEM_DATA, currentStudy);
}
}
}
addPageMessage("Discrepancy notes are saved successfully.", request);
request.setAttribute("id", studySubjectId + "");
forwardPage(Page.VIEW_STUDY_SUBJECT_SERVLET, request, response);
// "ViewStudySubject?id=" + studySubjectId));
return;
} else {
request.setAttribute(BEAN_DISPLAY, dsb);
request.setAttribute(BEAN_ANNOTATIONS, ecb.getAnnotations());
request.setAttribute("sec", sb);
request.setAttribute("EventCRFBean", ecb);
int tabNum = 1;
if ("".equalsIgnoreCase(fp.getString("tabId"))) {
tabNum = 1;
} else {
tabNum = fp.getInt("tabId");
}
request.setAttribute("tabId", new Integer(tabNum).toString());
// 2808: Signal interviewer.jsp that the containing page is
// viewSectionData,
// for the purpose of suppressing discrepancy note icons for the
// interview date and name fields
request.setAttribute(ENCLOSING_PAGE, "viewSectionData");
if ("yes".equalsIgnoreCase(printVersion)) {
forwardPage(Page.VIEW_SECTION_DATA_ENTRY_PRINT, request, response);
} else {
forwardPage(Page.VIEW_SECTION_DATA_ENTRY, request, response);
}
}
}
use of org.akaza.openclinica.dao.submit.CRFVersionDAO in project OpenClinica by OpenClinica.
the class EnterDataForStudyEventServlet method getUncompletedCRFs.
/**
* Finds all the event definitions for which no event CRF exists - which is
* the list of event definitions with uncompleted event CRFs.
*
* @param eventDefinitionCRFs
* All of the event definition CRFs for this study event.
* @param eventCRFs
* All of the event CRFs for this study event.
* @return The list of event definitions for which no event CRF exists.
*/
private ArrayList getUncompletedCRFs(ArrayList eventDefinitionCRFs, ArrayList eventCRFs) {
int i;
HashMap completed = new HashMap();
HashMap startedButIncompleted = new HashMap();
ArrayList answer = new ArrayList();
for (i = 0; i < eventDefinitionCRFs.size(); i++) {
EventDefinitionCRFBean edcrf = (EventDefinitionCRFBean) eventDefinitionCRFs.get(i);
completed.put(new Integer(edcrf.getCrfId()), Boolean.FALSE);
startedButIncompleted.put(new Integer(edcrf.getCrfId()), new EventCRFBean());
}
CRFVersionDAO cvdao = new CRFVersionDAO(sm.getDataSource());
ItemDataDAO iddao = new ItemDataDAO(sm.getDataSource());
for (i = 0; i < eventCRFs.size(); i++) {
EventCRFBean ecrf = (EventCRFBean) eventCRFs.get(i);
int crfId = cvdao.getCRFIdFromCRFVersionId(ecrf.getCRFVersionId());
ArrayList idata = iddao.findAllByEventCRFId(ecrf.getId());
if (!idata.isEmpty()) {
// this crf has data already
completed.put(new Integer(crfId), Boolean.TRUE);
} else {
// event crf got created, but no data entered
startedButIncompleted.put(new Integer(crfId), ecrf);
}
}
for (i = 0; i < eventDefinitionCRFs.size(); i++) {
DisplayEventDefinitionCRFBean dedc = new DisplayEventDefinitionCRFBean();
EventDefinitionCRFBean edcrf = (EventDefinitionCRFBean) eventDefinitionCRFs.get(i);
dedc.setEdc(edcrf);
Boolean b = (Boolean) completed.get(new Integer(edcrf.getCrfId()));
EventCRFBean ev = (EventCRFBean) startedButIncompleted.get(new Integer(edcrf.getCrfId()));
if (b == null || !b.booleanValue()) {
dedc.setEventCRF(ev);
answer.add(dedc);
}
}
return answer;
}
use of org.akaza.openclinica.dao.submit.CRFVersionDAO in project OpenClinica by OpenClinica.
the class ViewStudySubjectServlet method getUncompletedCRFs.
/**
* Finds all the event definitions for which no event CRF exists - which is
* the list of event definitions with uncompleted event CRFs.
*
* @param eventDefinitionCRFs
* All of the event definition CRFs for this study event.
* @param eventCRFs
* All of the event CRFs for this study event.
* @return The list of event definitions for which no event CRF exists.
*/
public static ArrayList getUncompletedCRFs(DataSource ds, ArrayList eventDefinitionCRFs, ArrayList eventCRFs, SubjectEventStatus status) {
int i;
HashMap completed = new HashMap();
HashMap startedButIncompleted = new HashMap();
ArrayList answer = new ArrayList();
for (i = 0; i < eventDefinitionCRFs.size(); i++) {
EventDefinitionCRFBean edcrf = (EventDefinitionCRFBean) eventDefinitionCRFs.get(i);
completed.put(new Integer(edcrf.getCrfId()), Boolean.FALSE);
startedButIncompleted.put(new Integer(edcrf.getCrfId()), new EventCRFBean());
}
CRFVersionDAO cvdao = new CRFVersionDAO(ds);
ItemDataDAO iddao = new ItemDataDAO(ds);
for (i = 0; i < eventCRFs.size(); i++) {
EventCRFBean ecrf = (EventCRFBean) eventCRFs.get(i);
// System.out.println("########event crf id:" + ecrf.getId());
int crfId = cvdao.getCRFIdFromCRFVersionId(ecrf.getCRFVersionId());
ArrayList idata = iddao.findAllByEventCRFId(ecrf.getId());
if (!idata.isEmpty()) {
// this crf has data already
completed.put(new Integer(crfId), Boolean.TRUE);
} else {
// event crf got created, but no data entered
// System.out.println("added one into startedButIncompleted" + ecrf.getId());
startedButIncompleted.put(new Integer(crfId), ecrf);
}
}
// TODO possible relation to 1689 here, tbh
for (i = 0; i < eventDefinitionCRFs.size(); i++) {
DisplayEventDefinitionCRFBean dedc = new DisplayEventDefinitionCRFBean();
EventDefinitionCRFBean edcrf = (EventDefinitionCRFBean) eventDefinitionCRFs.get(i);
// System.out.println("created dedc with edcrf
// "+edcrf.getCrfName()+" default version "+
// edcrf.getDefaultVersionName()+", id
// "+edcrf.getDefaultVersionId());
dedc.setEdc(edcrf);
// below added tbh, 112007 to fix bug 1943
if (status.equals(SubjectEventStatus.LOCKED)) {
dedc.setStatus(Status.LOCKED);
}
Boolean b = (Boolean) completed.get(new Integer(edcrf.getCrfId()));
EventCRFBean ev = (EventCRFBean) startedButIncompleted.get(new Integer(edcrf.getCrfId()));
if (b == null || !b.booleanValue()) {
// System.out.println("entered boolean loop with ev
// "+ev.getId()+" crf version id "+
// ev.getCRFVersionId());
dedc.setEventCRF(ev);
answer.add(dedc);
// System.out.println("just added dedc to answer");
// removed, tbh, since this is proving nothing, 11-2007
/*
* if (dedc.getEdc().getDefaultVersionId() !=
* dedc.getEventCRF().getId()) { System.out.println("ID
* MISMATCH: edc name "+dedc.getEdc().getName()+ ", default
* version id "+dedc.getEdc().getDefaultVersionId()+ " event crf
* id "+dedc.getEventCRF().getId()); }
*/
}
}
// System.out.println("size of answer" + answer.size());
return answer;
}
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