use of org.akaza.openclinica.dao.submit.CRFVersionDAO in project OpenClinica by OpenClinica.
the class AuditLogStudyServlet method processRequest.
/*
* (non-Javadoc) Assume that we get the user id automatically. We will jump
* from the edit user page if the user is an admin, they can get to see the
* users' log
*
* @see org.akaza.openclinica.control.core.SecureController#processRequest()
*/
/*
* (non-Javadoc) redo this servlet to run the audits per study subject for
* the study; need to add a studyId param and then use the
* StudySubjectDAO.findAllByStudyOrderByLabel() method to grab a lot of
* study subject beans and then return them much like in
* ViewStudySubjectAuditLogServet.process()
*
* currentStudy instead of studyId?
*/
@Override
protected void processRequest() throws Exception {
int studyId = currentStudy.getId();
StudySubjectDAO subdao = new StudySubjectDAO(sm.getDataSource());
SubjectDAO sdao = new SubjectDAO(sm.getDataSource());
AuditDAO adao = new AuditDAO(sm.getDataSource());
FormProcessor fp = new FormProcessor(request);
StudyEventDAO sedao = new StudyEventDAO(sm.getDataSource());
StudyEventDefinitionDAO seddao = new StudyEventDefinitionDAO(sm.getDataSource());
EventDefinitionCRFDAO edcdao = new EventDefinitionCRFDAO(sm.getDataSource());
EventCRFDAO ecdao = new EventCRFDAO(sm.getDataSource());
StudyDAO studydao = new StudyDAO(sm.getDataSource());
CRFDAO cdao = new CRFDAO(sm.getDataSource());
CRFVersionDAO cvdao = new CRFVersionDAO(sm.getDataSource());
HashMap eventCRFAuditsHashMap = new HashMap();
HashMap eventsHashMap = new HashMap();
HashMap studySubjectAuditsHashMap = new HashMap();
HashMap subjectHashMap = new HashMap();
ArrayList studySubjects = subdao.findAllByStudyOrderByLabel(currentStudy);
logger.info("found " + studySubjects.size() + " study subjects");
request.setAttribute("studySubjects", studySubjects);
for (int ss = 0; ss < studySubjects.size(); ss++) {
ArrayList studySubjectAudits = new ArrayList();
ArrayList eventCRFAudits = new ArrayList();
StudySubjectBean studySubject = (StudySubjectBean) studySubjects.get(ss);
// request.setAttribute("studySub"+ss, studySubject);
SubjectBean subject = (SubjectBean) sdao.findByPK(studySubject.getSubjectId());
subjectHashMap.put(new Integer(studySubject.getId()), subject);
// logger.info("just set a subject with a status of
// "+subject.getStatus().getName());
// request.setAttribute("subject"+ss, subject);
StudyBean study = (StudyBean) studydao.findByPK(studySubject.getStudyId());
request.setAttribute("study", study);
// hmm, repetitive work?
// Show both study subject and subject audit events together
// Study
studySubjectAudits.addAll(adao.findStudySubjectAuditEvents(studySubject.getId()));
// subject
// value
// changed
// Global
studySubjectAudits.addAll(adao.findSubjectAuditEvents(subject.getId()));
// subject
// value
// changed
studySubjectAuditsHashMap.put(new Integer(studySubject.getId()), studySubjectAudits);
// request.setAttribute("studySubjectAudits"+ss,
// studySubjectAudits);
// Get the list of events
ArrayList events = sedao.findAllByStudySubject(studySubject);
for (int i = 0; i < events.size(); i++) {
// Link study event definitions
StudyEventBean studyEvent = (StudyEventBean) events.get(i);
studyEvent.setStudyEventDefinition((StudyEventDefinitionBean) seddao.findByPK(studyEvent.getStudyEventDefinitionId()));
// Link event CRFs
studyEvent.setEventCRFs(ecdao.findAllByStudyEvent(studyEvent));
}
// for (int i = 0; i < events.size(); i++) {
// StudyEventBean studyEvent = (StudyEventBean) events.get(i);
// ArrayList eventCRFs = studyEvent.getEventCRFs();
// for (int j = 0; j < eventCRFs.size(); j++) {
// //Link CRF and CRF Versions
// EventCRFBean eventCRF = (EventCRFBean) eventCRFs.get(j);
// eventCRF.setCrfVersion((CRFVersionBean)
// cvdao.findByPK(eventCRF.getCRFVersionId()));
// eventCRF.setCrf((CRFBean)
// cdao.findByVersionId(eventCRF.getCRFVersionId()));
// //Get the event crf audits
// eventCRFAudits.addAll(adao.findEventCRFAuditEvents(eventCRF.getId()));
// }
// }
eventsHashMap.put(new Integer(studySubject.getId()), events);
// request.setAttribute("events"+ss, events);
// eventCRFAuditsHashMap.put(new Integer(studySubject.getId()),
// eventCRFAudits);
// request.setAttribute("eventCRFAudits"+ss, eventCRFAudits);
}
// request.setAttribute("eventCRFAudits", eventCRFAuditsHashMap);
request.setAttribute("events", eventsHashMap);
request.setAttribute("studySubjectAudits", studySubjectAuditsHashMap);
request.setAttribute("study", currentStudy);
request.setAttribute("subjects", subjectHashMap);
// FormProcessor fp = new FormProcessor(request);
//
// AuditEventDAO aeDAO = new AuditEventDAO(sm.getDataSource());
// ArrayList al = aeDAO.findAllByStudyId(currentStudy.getId());
//
// EntityBeanTable table = fp.getEntityBeanTable();
// ArrayList allRows = AuditEventStudyRow.generateRowsFromBeans(al);
// String[] columns = { "Date and Time", "Action", "Entity/Operation",
// "Record ID", "Changes and Additions","Other Info" };
// table.setColumns(new ArrayList(Arrays.asList(columns)));
// table.hideColumnLink(4);
// table.hideColumnLink(1);
// table.hideColumnLink(5);
// table.setQuery("AuditLogUser?userLogId="+userId, new HashMap());
// String[] columns =
// {resword.getString("date_and_time"),resword.getString("action_message"),
// resword.getString("entity_operation"),
// resword.getString("updated_by"),resword.getString("subject_unique_ID"),resword.getString("changes_and_additions"),
// //"Other Info",
// resword.getString("actions")};
// table.setColumns(new ArrayList(Arrays.asList(columns)));
// table.setAscendingSort(false);
// table.hideColumnLink(1);
// table.hideColumnLink(5);
// table.hideColumnLink(6);
// //table.hideColumnLink(7);
// table.setQuery("AuditLogStudy", new HashMap());
// table.setRows(allRows);
// table.computeDisplay();
//
//
// request.setAttribute("table", table);
logger.warn("*** found servlet, sending to page ***");
String pattn = "";
String pattern2 = "";
pattn = ResourceBundleProvider.getFormatBundle().getString("date_format_string");
pattern2 = ResourceBundleProvider.getFormatBundle().getString("date_time_format_string");
request.setAttribute("dateFormatPattern", pattn);
request.setAttribute("dateTimeFormatPattern", pattern2);
forwardPage(Page.AUDIT_LOG_STUDY);
}
use of org.akaza.openclinica.dao.submit.CRFVersionDAO in project OpenClinica by OpenClinica.
the class RuleSetServiceTest method getRuleSetsByCrfStudyAndStudyEventDefinition.
// @pgawade 08-NOV-2010 Commented out the test
// "testFilterRuleSetsByStudyEventOrdinal" temporarily. Krikor will look
// into this.
// public void testFilterRuleSetsByStudyEventOrdinal() {
// List<RuleSetBean> ruleSets = getRuleSets();
// StudyEventDAO studyEventDao = new StudyEventDAO(getDataSource());
// StudyEventBean studyEventBean = (StudyEventBean)
// studyEventDao.findByPK(1);
//
// RuleSetServiceInterface instance = (RuleSetServiceInterface)
// getContext().getBean("ruleSetService");
// List<RuleSetBean> ruleSets1 =
// instance.filterRuleSetsByStudyEventOrdinal(ruleSets, studyEventBean);
//
// assertEquals("Expressions Size inside this RuleSet should be 1", 1,
// ruleSets1.get(0).getExpressions().size());
// assertEquals("Expression Value should be SE_ED2REPEA[1].F_CONC_V20.IG_CONC_CONCOMITANTMEDICATIONS.I_CONC_CON_MED_NAME",
// "SE_ED2REPEA[1].F_CONC_V20.IG_CONC_CONCOMITANTMEDICATIONS.I_CONC_CON_MED_NAME",
// ruleSets1.get(0).getExpressions().get(0).getValue());
// }
//
// @pgawade 08-NOV-2010 Commented out the test
// "testFilterRuleSetsByStudyEventOrdinalWithALL" temporarily. Krikor will
// look into this.
// public void testFilterRuleSetsByStudyEventOrdinalWithALL() {
// List<RuleSetBean> ruleSets = getRuleSets();
// StudyEventDAO studyEventDao = new StudyEventDAO(getDataSource());
// StudyEventBean studyEventBean = (StudyEventBean)
// studyEventDao.findByPK(2);
//
// RuleSetServiceInterface instance = (RuleSetServiceInterface)
// getContext().getBean("ruleSetService");
// ruleSets.get(0).getTarget().setValue("SE_ED2REPEA[ALL].F_CONC_V20.IG_CONC_CONCOMITANTMEDICATIONS.I_CONC_CON_MED_NAME");
// List<RuleSetBean> ruleSets2 =
// instance.filterRuleSetsByStudyEventOrdinal(ruleSets, studyEventBean);
//
// assertEquals("Expressions Size inside this RuleSet should be 1", 1,
// ruleSets2.get(0).getExpressions().size());
// assertEquals("Expression Value should be SE_ED2REPEA[2].F_CONC_V20.IG_CONC_CONCOMITANTMEDICATIONS.I_CONC_CON_MED_NAME",
// "SE_ED2REPEA[2].F_CONC_V20.IG_CONC_CONCOMITANTMEDICATIONS.I_CONC_CON_MED_NAME",
// ruleSets2.get(0).getExpressions().get(0).getValue());
// }
private List<RuleSetBean> getRuleSetsByCrfStudyAndStudyEventDefinition() {
StudyDAO studyDao = new StudyDAO(getDataSource());
StudyBean study = (StudyBean) studyDao.findByPK(1);
assertNotNull(study);
StudyEventDefinitionDAO studyEventDefinitionDao = new StudyEventDefinitionDAO(getDataSource());
StudyEventDefinitionBean studyEventDefinition = (StudyEventDefinitionBean) studyEventDefinitionDao.findByPK(2);
assertNotNull(studyEventDefinition);
CRFVersionDAO crfVersionDao = new CRFVersionDAO(getDataSource());
CRFVersionBean crfVersion = (CRFVersionBean) crfVersionDao.findByPK(2);
assertNotNull(crfVersion);
RuleSetServiceInterface instance = (RuleSetServiceInterface) getContext().getBean("ruleSetService");
List<RuleSetBean> ruleSets = instance.getRuleSetsByCrfStudyAndStudyEventDefinition(study, studyEventDefinition, crfVersion);
return ruleSets;
}
use of org.akaza.openclinica.dao.submit.CRFVersionDAO in project OpenClinica by OpenClinica.
the class PrintAllEventCRFServlet method processRequest.
@Override
public void processRequest(HttpServletRequest request, HttpServletResponse response) throws Exception {
FormProcessor fp = new FormProcessor(request);
SessionManager sm = (SessionManager) request.getSession().getAttribute("sm");
EventCRFBean ecb = (EventCRFBean) request.getAttribute(INPUT_EVENT_CRF);
SectionBean sb = (SectionBean) request.getAttribute(SECTION_BEAN);
ArrayList<SectionBean> allSectionBeans;
// The PrintDataEntry servlet handles this parameter
boolean isSubmitted = false;
StudyEventDefinitionDAO sedao = new StudyEventDefinitionDAO(sm.getDataSource());
EventDefinitionCRFDAO edao = new EventDefinitionCRFDAO(sm.getDataSource());
EventDefinitionCRFDAO edcdao = new EventDefinitionCRFDAO(sm.getDataSource());
StudyDAO studyDao = new StudyDAO(sm.getDataSource());
StudyBean currentStudy = (StudyBean) request.getSession().getAttribute("study");
ArrayList<StudyEventDefinitionBean> seds = new ArrayList<StudyEventDefinitionBean>();
seds = sedao.findAllByStudy(currentStudy);
// ArrayList eventDefinitionCRFs = (ArrayList) edao.findAllByStudy(site);
CRFVersionDAO cvdao = new CRFVersionDAO(sm.getDataSource());
CRFDAO cdao = new CRFDAO(sm.getDataSource());
ArrayList<EventDefinitionCRFBean> edcs = new ArrayList();
for (StudyEventDefinitionBean sed : seds) {
int defId = sed.getId();
edcs.addAll(edcdao.findAllByDefinition(currentStudy, defId));
}
Map eventDefinitionDefaultVersions = new LinkedHashMap();
for (int i = 0; i < edcs.size(); i++) {
EventDefinitionCRFBean edc = edcs.get(i);
ArrayList versions = (ArrayList) cvdao.findAllByCRF(edc.getCrfId());
edc.setVersions(versions);
CRFBean crf = (CRFBean) cdao.findByPK(edc.getCrfId());
// edc.setCrfLabel(crf.getLabel());
edc.setCrfName(crf.getName());
// to show/hide edit action on jsp page
if (crf.getStatus().equals(Status.AVAILABLE)) {
edc.setOwner(crf.getOwner());
}
CRFVersionBean defaultVersion = (CRFVersionBean) cvdao.findByPK(edc.getDefaultVersionId());
StudyEventDefinitionBean studyEventDefinitionBean = (StudyEventDefinitionBean) sedao.findByPK(edc.getStudyEventDefinitionId());
edc.setDefaultVersionName(defaultVersion.getName());
if (defaultVersion.getStatus().isAvailable()) {
List list = (ArrayList) eventDefinitionDefaultVersions.get(studyEventDefinitionBean);
if (list == null)
list = new ArrayList();
list.add(defaultVersion);
eventDefinitionDefaultVersions.put(studyEventDefinitionBean, list);
}
}
// Whether IE6 or IE7 is involved
String isIE = fp.getString("ie");
if ("y".equalsIgnoreCase(isIE)) {
request.setAttribute("isInternetExplorer", "true");
}
SectionDAO sdao = new SectionDAO(sm.getDataSource());
CRFVersionDAO crfVersionDAO = new CRFVersionDAO(sm.getDataSource());
CRFDAO crfDao = new CRFDAO(sm.getDataSource());
Map sedCrfBeans = null;
for (Iterator it = eventDefinitionDefaultVersions.keySet().iterator(); it.hasNext(); ) {
if (sedCrfBeans == null)
sedCrfBeans = new LinkedHashMap();
StudyEventDefinitionBean sedBean = (StudyEventDefinitionBean) it.next();
List crfVersions = (ArrayList) eventDefinitionDefaultVersions.get(sedBean);
for (Iterator crfIt = crfVersions.iterator(); crfIt.hasNext(); ) {
CRFVersionBean crfVersionBean = (CRFVersionBean) crfIt.next();
allSectionBeans = new ArrayList<SectionBean>();
ArrayList sectionBeans = new ArrayList();
ItemGroupDAO itemGroupDao = new ItemGroupDAO(sm.getDataSource());
// Find truely grouped tables, not groups with a name of 'Ungrouped'
List<ItemGroupBean> itemGroupBeans = itemGroupDao.findOnlyGroupsByCRFVersionID(crfVersionBean.getId());
CRFBean crfBean = crfDao.findByVersionId(crfVersionBean.getId());
if (itemGroupBeans.size() > 0) {
// get a DisplaySectionBean for each section of the CRF, sort
// them, then
// dispatch the request to a print JSP. The constructor for this
// handler takes
// a boolean value depending on whether data is involved or not
// ('false' in terms of this
// servlet; see PrintDataEntryServlet).
DisplaySectionBeanHandler handler = new DisplaySectionBeanHandler(false, getDataSource(), getServletContext());
handler.setCrfVersionId(crfVersionBean.getId());
// handler.setEventCRFId(eventCRFId);
List<DisplaySectionBean> displaySectionBeans = handler.getDisplaySectionBeans();
request.setAttribute("listOfDisplaySectionBeans", displaySectionBeans);
// Make available the CRF names and versions for
// the web page's header
CRFVersionBean crfverBean = (CRFVersionBean) crfVersionDAO.findByPK(crfVersionBean.getId());
request.setAttribute("crfVersionBean", crfverBean);
request.setAttribute("crfBean", crfBean);
// Set an attribute signaling that data is not involved
request.setAttribute("dataInvolved", "false");
PrintCRFBean printCrfBean = new PrintCRFBean();
printCrfBean.setDisplaySectionBeans(displaySectionBeans);
printCrfBean.setCrfVersionBean(crfVersionBean);
printCrfBean.setCrfBean(crfBean);
printCrfBean.setEventCrfBean(ecb);
printCrfBean.setGrouped(true);
List list = (ArrayList) sedCrfBeans.get(sedBean);
if (list == null)
list = new ArrayList();
list.add(printCrfBean);
sedCrfBeans.put(sedBean, list);
continue;
}
ecb = new EventCRFBean();
ecb.setCRFVersionId(crfVersionBean.getId());
CRFVersionBean version = (CRFVersionBean) crfVersionDAO.findByPK(crfVersionBean.getId());
ArrayList sects = (ArrayList) sdao.findByVersionId(version.getId());
for (int i = 0; i < sects.size(); i++) {
sb = (SectionBean) sects.get(i);
// super.sb = sb;
int sectId = sb.getId();
if (sectId > 0) {
allSectionBeans.add((SectionBean) sdao.findByPK(sectId));
}
}
request.setAttribute(INPUT_EVENT_CRF, ecb);
request.setAttribute(SECTION_BEAN, sb);
request.setAttribute(ALL_SECTION_BEANS, allSectionBeans);
sectionBeans = super.getAllDisplayBeans(request);
DisplaySectionBean dsb = super.getDisplayBean(false, false, request, isSubmitted);
PrintCRFBean printCrfBean = new PrintCRFBean();
printCrfBean.setAllSections(sectionBeans);
printCrfBean.setDisplaySectionBean(dsb);
printCrfBean.setEventCrfBean(ecb);
printCrfBean.setCrfVersionBean(crfVersionBean);
printCrfBean.setCrfBean(crfBean);
printCrfBean.setGrouped(false);
List list = (ArrayList) sedCrfBeans.get(sedBean);
if (list == null)
list = new ArrayList();
list.add(printCrfBean);
sedCrfBeans.put(sedBean, list);
}
}
request.setAttribute("sedCrfBeans", sedCrfBeans);
request.setAttribute("studyName", currentStudy.getName());
forwardPage(Page.VIEW_ALL_DEFAULT_CRF_VERSIONS_PRINT, request, response);
}
use of org.akaza.openclinica.dao.submit.CRFVersionDAO in project OpenClinica by OpenClinica.
the class PrintCRFByIdServlet method processRequest.
/*
* (non-Javadoc)
* @see org.akaza.openclinica.control.managestudy.ViewSectionDataEntryServlet#processRequest()
*/
@Override
public void processRequest(HttpServletRequest request, HttpServletResponse response) throws Exception {
StudyBean currentStudy = (StudyBean) request.getSession().getAttribute("study");
StudyDAO studyDao = new StudyDAO(getDataSource());
currentStudy = (StudyBean) studyDao.findByPK(1);
CRFVersionDAO crfVersionDao = new CRFVersionDAO(getDataSource());
if (request.getParameter("id") == null) {
forwardPage(Page.LOGIN, request, response);
}
CRFVersionBean crfVersion = crfVersionDao.findByOid(request.getParameter("id"));
request.setAttribute("study", currentStudy);
if (crfVersion != null) {
request.setAttribute("id", String.valueOf(crfVersion.getId()));
super.processRequest(request, response);
} else {
forwardPage(Page.LOGIN, request, response);
}
}
use of org.akaza.openclinica.dao.submit.CRFVersionDAO in project OpenClinica by OpenClinica.
the class ExportExcelStudySubjectAuditLogServlet method processRequest.
@Override
public void processRequest() throws Exception {
StudySubjectDAO subdao = new StudySubjectDAO(sm.getDataSource());
SubjectDAO sdao = new SubjectDAO(sm.getDataSource());
AuditDAO adao = new AuditDAO(sm.getDataSource());
StudyEventDAO sedao = new StudyEventDAO(sm.getDataSource());
StudyEventDefinitionDAO seddao = new StudyEventDefinitionDAO(sm.getDataSource());
EventDefinitionCRFDAO edcdao = new EventDefinitionCRFDAO(sm.getDataSource());
EventCRFDAO ecdao = new EventCRFDAO(sm.getDataSource());
StudyDAO studydao = new StudyDAO(sm.getDataSource());
CRFDAO cdao = new CRFDAO(sm.getDataSource());
CRFVersionDAO cvdao = new CRFVersionDAO(sm.getDataSource());
StudySubjectBean studySubject = null;
SubjectBean subject = null;
ArrayList events = null;
ArrayList studySubjectAudits = new ArrayList();
ArrayList eventCRFAudits = new ArrayList();
ArrayList studyEventAudits = new ArrayList();
ArrayList allDeletedEventCRFs = new ArrayList();
ArrayList allEventCRFs = new ArrayList();
ArrayList allEventCRFItems = new ArrayList();
String attachedFilePath = Utils.getAttachedFilePath(currentStudy);
FormProcessor fp = new FormProcessor(request);
int studySubId = fp.getInt("id", true);
if (studySubId == 0) {
addPageMessage(respage.getString("please_choose_a_subject_to_view"));
forwardPage(Page.LIST_STUDY_SUBJECTS);
} else {
studySubject = (StudySubjectBean) subdao.findByPK(studySubId);
StudyBean study = (StudyBean) studydao.findByPK(studySubject.getStudyId());
// Check if this StudySubject would be accessed from the Current Study
if (studySubject.getStudyId() != currentStudy.getId()) {
if (currentStudy.getParentStudyId() > 0) {
addPageMessage(respage.getString("no_have_correct_privilege_current_study") + " " + respage.getString("change_active_study_or_contact"));
forwardPage(Page.MENU_SERVLET);
return;
} else {
// The SubjectStudy is not belong to currentstudy and current study is not a site.
Collection sites = studydao.findOlnySiteIdsByStudy(currentStudy);
if (!sites.contains(study.getId())) {
addPageMessage(respage.getString("no_have_correct_privilege_current_study") + " " + respage.getString("change_active_study_or_contact"));
forwardPage(Page.MENU_SERVLET);
return;
}
}
}
subject = (SubjectBean) sdao.findByPK(studySubject.getSubjectId());
/* Show both study subject and subject audit events together */
// Study subject value changed
Collection studySubjectAuditEvents = adao.findStudySubjectAuditEvents(studySubject.getId());
// integer values.
for (Iterator iterator = studySubjectAuditEvents.iterator(); iterator.hasNext(); ) {
AuditBean auditBean = (AuditBean) iterator.next();
if (auditBean.getAuditEventTypeId() == 3) {
auditBean.setOldValue(Status.get(Integer.parseInt(auditBean.getOldValue())).getName());
auditBean.setNewValue(Status.get(Integer.parseInt(auditBean.getNewValue())).getName());
}
}
studySubjectAudits.addAll(studySubjectAuditEvents);
// Global subject value changed
studySubjectAudits.addAll(adao.findSubjectAuditEvents(subject.getId()));
studySubjectAudits.addAll(adao.findStudySubjectGroupAssignmentAuditEvents(studySubject.getId()));
// Get the list of events
events = sedao.findAllByStudySubject(studySubject);
for (int i = 0; i < events.size(); i++) {
// Link study event definitions
StudyEventBean studyEvent = (StudyEventBean) events.get(i);
studyEvent.setStudyEventDefinition((StudyEventDefinitionBean) seddao.findByPK(studyEvent.getStudyEventDefinitionId()));
// Link event CRFs
studyEvent.setEventCRFs(ecdao.findAllByStudyEvent(studyEvent));
// Find deleted Event CRFs
List deletedEventCRFs = adao.findDeletedEventCRFsFromAuditEvent(studyEvent.getId());
allDeletedEventCRFs.addAll(deletedEventCRFs);
List eventCRFs = (List) adao.findAllEventCRFAuditEvents(studyEvent.getId());
allEventCRFs.addAll(eventCRFs);
List eventCRFItems = (List) adao.findAllEventCRFAuditEventsWithItemDataType(studyEvent.getId());
allEventCRFItems.addAll(eventCRFItems);
logger.info("deletedEventCRFs size[" + deletedEventCRFs.size() + "]");
logger.info("allEventCRFItems size[" + allEventCRFItems.size() + "]");
}
for (int i = 0; i < events.size(); i++) {
StudyEventBean studyEvent = (StudyEventBean) events.get(i);
studyEventAudits.addAll(adao.findStudyEventAuditEvents(studyEvent.getId()));
ArrayList eventCRFs = studyEvent.getEventCRFs();
for (int j = 0; j < eventCRFs.size(); j++) {
// Link CRF and CRF Versions
EventCRFBean eventCRF = (EventCRFBean) eventCRFs.get(j);
eventCRF.setCrfVersion((CRFVersionBean) cvdao.findByPK(eventCRF.getCRFVersionId()));
eventCRF.setCrf(cdao.findByVersionId(eventCRF.getCRFVersionId()));
// Get the event crf audits
eventCRFAudits.addAll(adao.findEventCRFAuditEventsWithItemDataType(eventCRF.getId()));
logger.info("eventCRFAudits size [" + eventCRFAudits.size() + "] eventCRF id [" + eventCRF.getId() + "]");
}
}
ItemDataDAO itemDataDao = new ItemDataDAO(sm.getDataSource());
for (Object o : eventCRFAudits) {
AuditBean ab = (AuditBean) o;
if (ab.getAuditTable().equalsIgnoreCase("item_data")) {
ItemDataBean idBean = (ItemDataBean) itemDataDao.findByPK(ab.getEntityId());
ab.setOrdinal(idBean.getOrdinal());
}
}
}
try {
WritableFont headerFormat = new WritableFont(WritableFont.ARIAL, 8, WritableFont.BOLD, false, UnderlineStyle.NO_UNDERLINE, Colour.BLUE2);
WritableCellFormat cellFormat = new WritableCellFormat();
cellFormat.setFont(headerFormat);
response.setContentType("application/vnd.ms-excel");
response.setHeader("Content-Disposition", "attachment; filename=export.xls");
WorkbookSettings wbSettings = new WorkbookSettings();
wbSettings.setLocale(new Locale("en", "EN"));
WritableWorkbook workbook = Workbook.createWorkbook(response.getOutputStream(), wbSettings);
int row = 0;
// Subject Information
workbook.createSheet("Subject Information", 0);
WritableSheet excelSheet = workbook.getSheet(0);
// Subject Summary
String[] excelRow = new String[] { "study_subject_ID", "secondary_subject_ID", "date_of_birth", "person_ID", "created_by", "status" };
for (int i = 0; i < excelRow.length; i++) {
Label label = new Label(i, row, ResourceBundleProvider.getResWord(excelRow[i]), cellFormat);
excelSheet.addCell(label);
}
row++;
excelRow = new String[] { studySubject.getLabel(), studySubject.getSecondaryLabel(), dateFormat(subject.getDateOfBirth()), subject.getUniqueIdentifier(), studySubject.getOwner().getName(), studySubject.getStatus().getName() };
for (int i = 0; i < excelRow.length; i++) {
Label label = new Label(i, row, ResourceBundleProvider.getResWord(excelRow[i]), cellFormat);
excelSheet.addCell(label);
}
row++;
row++;
// Subject Audit Events
excelRow = new String[] { "audit_event", "date_time_of_server", "user", "value_type", "old", "new" };
for (int i = 0; i < excelRow.length; i++) {
Label label = new Label(i, row, ResourceBundleProvider.getResWord(excelRow[i]), cellFormat);
excelSheet.addCell(label);
}
row++;
for (int j = 0; j < studySubjectAudits.size(); j++) {
AuditBean audit = (AuditBean) studySubjectAudits.get(j);
excelRow = new String[] { audit.getAuditEventTypeName(), dateTimeFormat(audit.getAuditDate()), audit.getUserName(), audit.getEntityName(), audit.getOldValue(), audit.getNewValue() };
for (int i = 0; i < excelRow.length; i++) {
Label label = new Label(i, row, ResourceBundleProvider.getResWord(excelRow[i]), cellFormat);
excelSheet.addCell(label);
}
row++;
}
row++;
// Study Events
excelRow = new String[] { "study_events", "location", "date", "occurrence_number" };
for (int i = 0; i < excelRow.length; i++) {
Label label = new Label(i, row, ResourceBundleProvider.getResWord(excelRow[i]), cellFormat);
excelSheet.addCell(label);
}
row++;
for (int j = 0; j < events.size(); j++) {
StudyEventBean event = (StudyEventBean) events.get(j);
if (event.getStartTimeFlag()) {
excelRow = new String[] { event.getStudyEventDefinition().getName(), event.getLocation(), dateTimeFormat(event.getDateStarted()), Integer.toString(event.getSampleOrdinal()) };
} else {
excelRow = new String[] { event.getStudyEventDefinition().getName(), event.getLocation(), dateFormat(event.getDateStarted()), Integer.toString(event.getSampleOrdinal()) };
}
for (int i = 0; i < excelRow.length; i++) {
Label label = new Label(i, row, ResourceBundleProvider.getResWord(excelRow[i]), cellFormat);
excelSheet.addCell(label);
}
row++;
}
autoSizeColumns(excelSheet);
int sheet = 0;
// Study Event Summary Looper
for (int eventCount = 0; eventCount < events.size(); eventCount++) {
row = 0;
sheet++;
StudyEventBean event = (StudyEventBean) events.get(eventCount);
workbook.createSheet(event.getStudyEventDefinition().getName().replace("/", ".") + "_" + event.getSampleOrdinal(), sheet);
excelSheet = workbook.getSheet(sheet);
Label label = null;
// Header
label = new Label(0, row, ResourceBundleProvider.getResWord("name"), cellFormat);
excelSheet.addCell(label);
label = new Label(1, row, event.getStudyEventDefinition().getName(), cellFormat);
excelSheet.addCell(label);
row++;
label = new Label(0, row, "Location");
excelSheet.addCell(label);
label = new Label(1, row, event.getLocation());
excelSheet.addCell(label);
row++;
label = new Label(0, row, "Start Date");
excelSheet.addCell(label);
if (event.getStartTimeFlag()) {
label = new Label(1, row, dateTimeFormat(event.getDateStarted()));
} else {
label = new Label(1, row, dateFormat(event.getDateStarted()));
}
excelSheet.addCell(label);
row++;
label = new Label(0, row, "Status");
excelSheet.addCell(label);
label = new Label(1, row, event.getSubjectEventStatus().getName());
excelSheet.addCell(label);
row++;
label = new Label(0, row, ResourceBundleProvider.getResWord("occurrence_number"));
excelSheet.addCell(label);
label = new Label(1, row, Integer.toString(event.getSampleOrdinal()));
excelSheet.addCell(label);
row++;
row++;
// End Header
// Audit for Deleted Event CRFs
excelRow = new String[] { "name", "version", "deleted_by", "delete_date" };
for (int i = 0; i < excelRow.length; i++) {
label = new Label(i, row, ResourceBundleProvider.getResWord(excelRow[i]), cellFormat);
excelSheet.addCell(label);
}
row++;
for (int j = 0; j < allDeletedEventCRFs.size(); j++) {
DeletedEventCRFBean deletedEventCRF = (DeletedEventCRFBean) allDeletedEventCRFs.get(j);
if (deletedEventCRF.getStudyEventId() == event.getId()) {
excelRow = new String[] { deletedEventCRF.getCrfName(), deletedEventCRF.getCrfVersion(), deletedEventCRF.getDeletedBy(), dateFormat(deletedEventCRF.getDeletedDate()) };
for (int i = 0; i < excelRow.length; i++) {
label = new Label(i, row, ResourceBundleProvider.getResWord(excelRow[i]), cellFormat);
excelSheet.addCell(label);
}
row++;
}
}
row++;
row++;
// Audit Events for Study Event
excelRow = new String[] { "audit_event", "date_time_of_server", "user", "value_type", "old", "new" };
for (int i = 0; i < excelRow.length; i++) {
label = new Label(i, row, ResourceBundleProvider.getResWord(excelRow[i]), cellFormat);
excelSheet.addCell(label);
}
row++;
for (int j = 0; j < studyEventAudits.size(); j++) {
AuditBean studyEvent = (AuditBean) studyEventAudits.get(j);
if (studyEvent.getEntityId() == event.getId()) {
String getOld = studyEvent.getOldValue();
String oldValue = "";
if (getOld.equals("0"))
oldValue = "invalid";
else if (getOld.equals("1"))
oldValue = "scheduled";
else if (getOld.equals("2"))
oldValue = "not_scheduled";
else if (getOld.equals("3"))
oldValue = "data_entry_started";
else if (getOld.equals("4"))
oldValue = "completed";
else if (getOld.equals("5"))
oldValue = "stopped";
else if (getOld.equals("6"))
oldValue = "skipped";
else if (getOld.equals("7"))
oldValue = "locked";
else if (getOld.equals("8"))
oldValue = "signed";
else
oldValue = studyEvent.getOldValue();
String getNew = studyEvent.getNewValue();
String newValue = "";
if (getNew.equals("0"))
newValue = "invalid";
else if (getNew.equals("1"))
newValue = "scheduled";
else if (getNew.equals("2"))
newValue = "not_scheduled";
else if (getNew.equals("3"))
newValue = "data_entry_started";
else if (getNew.equals("4"))
newValue = "completed";
else if (getNew.equals("5"))
newValue = "removed";
else if (getNew.equals("6"))
newValue = "skipped";
else if (getNew.equals("7"))
newValue = "locked";
else if (getNew.equals("8"))
newValue = "signed";
else if (getNew.equals("9"))
newValue = "forzen";
else
newValue = studyEvent.getNewValue();
excelRow = new String[] { studyEvent.getAuditEventTypeName(), dateTimeFormat(studyEvent.getAuditDate()), studyEvent.getUserName(), studyEvent.getEntityName() + "(" + studyEvent.getOrdinal() + ")", oldValue, newValue };
for (int i = 0; i < excelRow.length; i++) {
label = new Label(i, row, ResourceBundleProvider.getResWord(excelRow[i]), cellFormat);
excelSheet.addCell(label);
}
row++;
}
}
row++;
row++;
// Event CRFs Audit Events
for (int j = 0; j < allEventCRFs.size(); j++) {
AuditBean auditBean = (AuditBean) allEventCRFs.get(j);
if (auditBean.getStudyEventId() == event.getId()) {
// Audit Events for Study Event
excelRow = new String[] { "name", "version", "date_interviewed", "interviewer_name", "owner" };
for (int i = 0; i < excelRow.length; i++) {
label = new Label(i, row, ResourceBundleProvider.getResWord(excelRow[i]), cellFormat);
excelSheet.addCell(label);
}
row++;
excelRow = new String[] { auditBean.getCrfName(), auditBean.getCrfVersionName(), dateFormat(auditBean.getDateInterviewed()), auditBean.getInterviewerName(), auditBean.getUserName() };
for (int i = 0; i < excelRow.length; i++) {
label = new Label(i, row, ResourceBundleProvider.getResWord(excelRow[i]), cellFormat);
excelSheet.addCell(label);
}
row++;
row++;
excelRow = new String[] { "audit_event", "date_time_of_server", "user", "value_type", "old", "new" };
for (int i = 0; i < excelRow.length; i++) {
label = new Label(i, row, ResourceBundleProvider.getResWord(excelRow[i]), cellFormat);
excelSheet.addCell(label);
}
row++;
row++;
for (int k = 0; k < allEventCRFItems.size(); k++) {
row--;
AuditBean eventCrfAudit = (AuditBean) allEventCRFItems.get(k);
if (eventCrfAudit.getStudyEventId() == event.getId() && eventCrfAudit.getEventCrfVersionId() == auditBean.getEventCrfVersionId()) {
String oldValue = "";
String newValue = "";
if (eventCrfAudit.getAuditEventTypeId() == 12 || eventCrfAudit.getEntityName().equals("Status")) {
String getOld = eventCrfAudit.getOldValue();
if (getOld.equals("0"))
oldValue = "invalid";
else if (getOld.equals("1"))
oldValue = "available";
else if (getOld.equals("2"))
oldValue = "unavailable";
else if (getOld.equals("3"))
oldValue = "private";
else if (getOld.equals("4"))
oldValue = "pending";
else if (getOld.equals("5"))
oldValue = "removed";
else if (getOld.equals("6"))
oldValue = "locked";
else if (getOld.equals("7"))
oldValue = "auto-removed";
else {
oldValue = getOld;
}
} else if (eventCrfAudit.getAuditEventTypeId() == 32) {
String getOld = eventCrfAudit.getOldValue();
if (getOld.equals("0"))
oldValue = "FALSE";
else if (getOld.equals("1"))
oldValue = "TRUE";
else {
oldValue = getOld;
}
} else {
oldValue = eventCrfAudit.getOldValue();
}
if (eventCrfAudit.getAuditEventTypeId() == 12 || eventCrfAudit.getEntityName().equals("Status")) {
String getNew = eventCrfAudit.getNewValue();
if (getNew.equals("0"))
newValue = "invalid";
else if (getNew.equals("1"))
newValue = "available";
else if (getNew.equals("2"))
newValue = "unavailable";
else if (getNew.equals("3"))
newValue = "private";
else if (getNew.equals("4"))
newValue = "pending";
else if (getNew.equals("5"))
newValue = "removed";
else if (getNew.equals("6"))
newValue = "locked";
else if (getNew.equals("7"))
newValue = "auto-removed";
else {
newValue = getNew;
}
} else if (eventCrfAudit.getAuditEventTypeId() == 32) {
String getNew = eventCrfAudit.getNewValue();
if (getNew.equals("0"))
newValue = "FALSE";
else if (getNew.equals("1"))
newValue = "TRUE";
else {
newValue = getNew;
}
} else {
newValue = eventCrfAudit.getNewValue();
}
String ordinal = "";
if (eventCrfAudit.getOrdinal() != 0) {
ordinal = "(" + eventCrfAudit.getOrdinal() + ")";
} else if (eventCrfAudit.getOrdinal() == 0 && eventCrfAudit.getItemDataRepeatKey() != 0) {
ordinal = "(" + eventCrfAudit.getItemDataRepeatKey() + ")";
}
excelRow = new String[] { eventCrfAudit.getAuditEventTypeName(), dateTimeFormat(eventCrfAudit.getAuditDate()), eventCrfAudit.getUserName(), eventCrfAudit.getEntityName() + ordinal, oldValue, newValue };
for (int i = 0; i < excelRow.length; i++) {
label = new Label(i, row, ResourceBundleProvider.getResWord(excelRow[i]), cellFormat);
excelSheet.addCell(label);
}
row++;
row++;
}
row++;
}
row++;
}
autoSizeColumns(excelSheet);
}
}
workbook.write();
workbook.close();
session.setAttribute("subject", null);
session.setAttribute("study", null);
session.setAttribute("studySub", null);
session.setAttribute("studyEventAudits", null);
session.setAttribute("studySubjectAudits", null);
session.setAttribute("events", null);
session.setAttribute("eventCRFAudits", null);
session.setAttribute("allDeletedEventCRFs", null);
} catch (Exception e) {
throw e;
} finally {
// proposed move session attributes here
}
}
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