Examples with UserAccount org.akaza.openclinica.domain.user.UserAccount used on opensource projects

Example 6 with UserAccount

use of org.akaza.openclinica.domain.user.UserAccount in project OpenClinica by OpenClinica.

the class OpenRosaServices method getUserXml.

private String getUserXml(ServletContext context) throws Exception {
    HashMap<String, String> value = getSubjectContextCacheValue(context);
    String studySubjectOid = value.get("studySubjectOID");
    StudySubject ssBean = ssDao.findByOcOID(studySubjectOid);
    StudyBean study = getStudy(ssBean.getStudy().getOc_oid());
    StudyBean parentStudy = getParentStudy(ssBean.getStudy().getOc_oid());
    DocumentBuilderFactory docFactory = DocumentBuilderFactory.newInstance();
    DocumentBuilder docBuilder = docFactory.newDocumentBuilder();
    Document doc = docBuilder.newDocument();
    Element root = doc.createElement("root");
    doc.appendChild(root);
    List<UserAccount> users = userAccountDao.findNonRootNonParticipateUsersByStudyId(study.getId(), parentStudy.getId());
    for (UserAccount userAccount : users) {
        Element item = doc.createElement("item");
        Element userName = doc.createElement("user_name");
        userName.appendChild(doc.createTextNode(userAccount.getUserName()));
        Element firstName = doc.createElement("first_name");
        firstName.appendChild(doc.createTextNode(userAccount.getFirstName()));
        Element lastName = doc.createElement("last_name");
        lastName.appendChild(doc.createTextNode(userAccount.getLastName()));
        item.appendChild(userName);
        item.appendChild(firstName);
        item.appendChild(lastName);
        root.appendChild(item);
    }
    DOMSource dom = new DOMSource(doc);
    StringWriter writer = new StringWriter();
    StreamResult result = new StreamResult(writer);
    TransformerFactory tf = TransformerFactory.newInstance();
    Transformer transformer = tf.newTransformer();
    transformer.transform(dom, result);
    String userXml = writer.toString();
    return userXml;
}

Example 7 with UserAccount

use of org.akaza.openclinica.domain.user.UserAccount in project OpenClinica by OpenClinica.

the class OpenRosaSubmissionController method isParticipantSubmission.

private boolean isParticipantSubmission(HashMap<String, String> subjectContext) {
    boolean isParticipant = true;
    String userAccountId = subjectContext.get("userAccountID");
    if (StringUtils.isNotEmpty(userAccountId)) {
        UserAccount user = userAccountDao.findByUserId(Integer.valueOf(userAccountId));
        // user name.
        if (user != null && !user.getUserName().contains("."))
            return false;
    }
    return isParticipant;
}

Example 8 with UserAccount

use of org.akaza.openclinica.domain.user.UserAccount in project OpenClinica by OpenClinica.

the class OpenRosaSubmissionController method markComplete.

// @RequestMapping(value = "/{studyOID}/fieldsubmission/complete", method = RequestMethod.POST)
public ResponseEntity<String> markComplete(HttpServletRequest request, HttpServletResponse response, @PathVariable("studyOID") String studyOID, @RequestParam(FORM_CONTEXT) String ecid) throws Exception {
    HashMap<String, String> subjectContext = null;
    PFormCache cache = PFormCache.getInstance(context);
    subjectContext = cache.getSubjectContext(ecid);
    int studyEventDefinitionID = Integer.valueOf(subjectContext.get("studyEventDefinitionID"));
    int userAccountID = Integer.valueOf(subjectContext.get("userAccountID"));
    String studySubjectOID = subjectContext.get("studySubjectOID");
    String formLayoutOID = subjectContext.get("formLayoutOID");
    int studyEventOrdinal = Integer.valueOf(subjectContext.get("studyEventOrdinal"));
    UserAccount userAccount = userAccountDao.findById(userAccountID);
    StudySubject studySubject = studySubjectDao.findByOcOID(studySubjectOID);
    Study study = studyDao.findByOcOID(studyOID);
    StudyEventDefinition sed = studyEventDefinitionDao.findById(studyEventDefinitionID);
    FormLayout formLayout = formLayoutDao.findByOcOID(formLayoutOID);
    CrfVersion crfVersion = crfVersionDao.findAllByCrfId(formLayout.getCrf().getCrfId()).get(0);
    StudyEvent studyEvent = studyEventDao.fetchByStudyEventDefOIDAndOrdinalTransactional(sed.getOc_oid(), studyEventOrdinal, studySubject.getStudySubjectId());
    EventCrf eventCrf = eventCrfDao.findByStudyEventIdStudySubjectIdFormLayoutId(studyEvent.getStudyEventId(), studySubject.getStudySubjectId(), formLayout.getFormLayoutId());
    if (eventCrf == null) {
        eventCrf = createEventCrf(formLayout, studyEvent, studySubject, userAccount);
        List<Item> items = itemDao.findAllByCrfVersion(crfVersion.getCrfVersionId());
        createItemData(items.get(0), "", eventCrf, userAccount);
    }
    eventCrf.setStatusId(org.akaza.openclinica.domain.Status.UNAVAILABLE.getCode());
    eventCrf.setUserAccount(userAccount);
    eventCrf.setUpdateId(userAccount.getUserId());
    eventCrf.setDateUpdated(new Date());
    eventCrfDao.saveOrUpdate(eventCrf);
    List<EventCrf> eventCrfs = eventCrfDao.findByStudyEventIdStudySubjectId(studyEvent.getStudyEventId(), studySubject.getOcOid());
    List<EventDefinitionCrf> eventDefinitionCrfs = eventDefinitionCrfDao.findAvailableByStudyEventDefStudy(sed.getStudyEventDefinitionId(), study.getStudyId());
    int count = 0;
    for (EventCrf evCrf : eventCrfs) {
        if (evCrf.getStatusId() == org.akaza.openclinica.domain.Status.UNAVAILABLE.getCode() || evCrf.getStatusId() == org.akaza.openclinica.domain.Status.DELETED.getCode() || evCrf.getStatusId() == org.akaza.openclinica.domain.Status.AUTO_DELETED.getCode()) {
            for (EventDefinitionCrf eventDefinitionCrf : eventDefinitionCrfs) {
                if (eventDefinitionCrf.getCrf().getCrfId() == evCrf.getFormLayout().getCrf().getCrfId()) {
                    count++;
                    break;
                }
            }
        }
    }
    if (count == eventDefinitionCrfs.size()) {
        studyEvent.setSubjectEventStatusId(SubjectEventStatus.COMPLETED.getCode());
        studyEvent.setUserAccount(userAccount);
        studyEventDao.saveOrUpdate(studyEvent);
    } else if (studyEvent.getSubjectEventStatusId() == SubjectEventStatus.SCHEDULED.getCode()) {
        studyEvent.setSubjectEventStatusId(SubjectEventStatus.DATA_ENTRY_STARTED.getCode());
        studyEvent.setUserAccount(userAccount);
        studyEventDao.saveOrUpdate(studyEvent);
    }
    String responseMessage = "<OpenRosaResponse xmlns=\"http://openrosa.org/http/response\">" + "<message>success</message>" + "</OpenRosaResponse>";
    return new ResponseEntity<String>(responseMessage, HttpStatus.CREATED);
}

Example 9 with UserAccount

use of org.akaza.openclinica.domain.user.UserAccount in project OpenClinica by OpenClinica.

the class StudySubjectProcessor method createSubject.

private Subject createSubject(Date currentDate) {
    UserAccount rootUser = userAccountDao.findByUserId(1);
    Subject subject = new Subject();
    subject.setUserAccount(rootUser);
    subject.setStatus(Status.AVAILABLE);
    subject.setDobCollected(false);
    subject.setDateCreated(currentDate);
    subject.setUniqueIdentifier("");
    subject = subjectDao.saveOrUpdate(subject);
    return subject;
}

Example 10 with UserAccount

use of org.akaza.openclinica.domain.user.UserAccount in project OpenClinica by OpenClinica.

the class OdmImportServiceImpl method importOdmToOC.

@Transactional
public void importOdmToOC(ODM odm) {
    UserAccount userAccount = getCurrentUser();
    // TODO add validation to all entities
    ODMcomplexTypeDefinitionStudy odmStudy = odm.getStudy().get(0);
    Study study = saveOrUpdateStudy(odm, userAccount, odmStudy);
    ParticipantPortalRegistrar portal = new ParticipantPortalRegistrar();
    portal.registerStudy(study.getOc_oid(), study.getOc_oid(), study.getName());
    StudyParameterValue spv = getStudyParameterValueDao().findByStudyIdParameter(study.getStudyId(), "participantPortal");
    // Update OC Study configuration
    if (spv == null) {
        spv = new StudyParameterValue();
        spv.setStudy(study);
    }
    spv.setValue("enabled");
    spv = getStudyParameterValueDao().saveOrUpdate(spv);
    StudyUserRole studyUserRole = null;
    StudyUserRoleId studyUserRoleId = null;
    Form[] fmCrfs = getAllCrfsByProtIdFromFormManager(study);
    ArrayList<StudyUserRole> surRoles = getStudyUserRoleDao().findAllUserRolesByUserAccount(userAccount, study.getStudyId(), study.getStudyId());
    if (surRoles.size() == 0) {
        studyUserRoleId = new StudyUserRoleId();
        studyUserRole = new StudyUserRole();
        studyUserRole = getStudyUserRoleDao().saveOrUpdate(populateUserRole(study, userAccount, studyUserRole, studyUserRoleId));
    }
    StudyEventDefinition studyEventDefinition = null;
    List<ODMcomplexTypeDefinitionMetaDataVersion> odmMetadataVersions = odmStudy.getMetaDataVersion();
    List<ODMcomplexTypeDefinitionStudyEventDef> odmStudyEventDefs = saveOrUpdateEvent(userAccount, study, odmMetadataVersions);
    CrfBean crf = null;
    FormLayout formLayout = null;
    saveOrUpdateCrf(userAccount, study, odmMetadataVersions, fmCrfs);
    List<ODMcomplexTypeDefinitionStudyEventRef> odmStudyEventRefs = odmMetadataVersions.get(0).getProtocol().getStudyEventRef();
    for (ODMcomplexTypeDefinitionStudyEventRef odmStudyEventRef : odmStudyEventRefs) {
        for (ODMcomplexTypeDefinitionStudyEventDef odmStudyEventDef : odmStudyEventDefs) {
            if (odmStudyEventDef.getOID().equals(odmStudyEventRef.getStudyEventOID())) {
                studyEventDefinition = getStudyEventDefDao().findByOcOID(odmStudyEventDef.getOID());
                studyEventDefinition.setOrdinal(odmStudyEventRef.getOrderNumber().intValue());
                studyEventDefinition = getStudyEventDefDao().saveOrUpdate(studyEventDefinition);
                List<EventDefinitionCrf> jsonEventDefCrfList = new ArrayList<>();
                EventDefinitionCrf eventDefinitionCrf = null;
                for (ODMcomplexTypeDefinitionFormRef odmFormRef : odmStudyEventDef.getFormRef()) {
                    crf = getCrfDao().findByOcOID(odmFormRef.getFormOID());
                    eventDefinitionCrf = getEventDefinitionCrfDao().findByStudyEventDefinitionIdAndCRFIdAndStudyId(studyEventDefinition.getStudyEventDefinitionId(), crf.getCrfId(), study.getStudyId());
                    String defaultVersionName = null;
                    OCodmComplexTypeDefinitionConfigurationParameters conf = odmFormRef.getConfigurationParameters();
                    List<OCodmComplexTypeDefinitionFormLayoutRef> formLayoutRefs = odmFormRef.getFormLayoutRef();
                    if (formLayoutRefs.size() == 1 && formLayoutRefs.get(0).getIsDefaultVersion() == null) {
                        defaultVersionName = formLayoutRefs.get(0).getOID();
                    } else {
                        for (OCodmComplexTypeDefinitionFormLayoutRef formLayoutRef : formLayoutRefs) {
                            if (formLayoutRef.getIsDefaultVersion().equalsIgnoreCase("Yes")) {
                                defaultVersionName = formLayoutRef.getOID();
                            }
                        }
                    }
                    if (defaultVersionName == null) {
                        defaultVersionName = formLayoutRefs.get(0).getOID();
                    }
                    formLayout = getFormLayoutDao().findByNameCrfId(defaultVersionName, crf.getCrfId());
                    EventDefinitionCrfDTO edcObj = new EventDefinitionCrfDTO();
                    edcObj.setUserAccount(userAccount);
                    edcObj.setConf(conf);
                    edcObj.setCrf(crf);
                    edcObj.setEventDefinitionCrf(eventDefinitionCrf);
                    edcObj.setOdmFormRef(odmFormRef);
                    edcObj.setStudy(study);
                    edcObj.setFormLayout(formLayout);
                    edcObj.setStudyEventDefinition(studyEventDefinition);
                    EDCTagDTO populateEDCTagParameter = new EDCTagDTO();
                    populateEDCTagParameter.setConf(conf);
                    populateEDCTagParameter.setConf(conf);
                    populateEDCTagParameter.setEventDefinitionCrf(eventDefinitionCrf);
                    populateEDCTagParameter.setUserAccount(userAccount);
                    eventDefinitionCrf = saveOrUpdateEventDefnCrf(new EventDefinitionCrfDTO(edcObj));
                    saveOrUpdateEDCTag(new EDCTagDTO(populateEDCTagParameter), studyEventDefinition, crf);
                    jsonEventDefCrfList.add(eventDefinitionCrf);
                }
                List<EventDefinitionCrf> ocEventDefCrfList = getEventDefinitionCrfDao().findAvailableByStudyEventDefStudy(studyEventDefinition.getStudyEventDefinitionId(), study.getStudyId());
                for (EventDefinitionCrf ocEventDefCrf : ocEventDefCrfList) {
                    if (!jsonEventDefCrfList.contains(ocEventDefCrf)) {
                        ocEventDefCrf.setStatusId(Status.DELETED.getCode());
                        getEventDefinitionCrfDao().saveOrUpdate(ocEventDefCrf);
                    }
                }
            }
        }
    }
}