Examples with OutputDataObjectType org.apache.airavata.model.application.io.OutputDataObjectType used on opensource projects

Example 61 with OutputDataObjectType

use of org.apache.airavata.model.application.io.OutputDataObjectType in project airavata by apache.

the class RegisterSampleApplications method registerEchoInterface.

public void registerEchoInterface() {
    try {
        System.out.println("#### Registering Echo Interface #### \n");
        List<String> appModules = new ArrayList<String>();
        appModules.add(echoModuleId);
        InputDataObjectType input1 = RegisterSampleApplicationsUtils.createAppInput("Input_to_Echo", "", DataType.STRING, null, 1, false, true, false, "A test string to Echo", null);
        // InputDataObjectType input2 = RegisterSampleApplicationsUtils.createAppInput("Input_to_Echo2", "",
        // DataType.URI, null, 2, false, false,false, "A sample input remote file", null);
        // 
        // InputDataObjectType input3 = RegisterSampleApplicationsUtils.createAppInput("Input_to_Echo3", "file:///tmp/test.txt",
        // DataType.URI, null, 3,false, false, false, "A sample input local file", null);
        List<InputDataObjectType> applicationInputs = new ArrayList<InputDataObjectType>();
        applicationInputs.add(input1);
        // applicationInputs.add(input2); applicationInputs.add(input3);
        OutputDataObjectType output1 = RegisterSampleApplicationsUtils.createAppOutput("Echoed_Output", "", DataType.STDOUT, true, false, null);
        OutputDataObjectType output2 = RegisterSampleApplicationsUtils.createAppOutput("Echoed_Error", "", DataType.STDERR, true, false, null);
        List<OutputDataObjectType> applicationOutputs = new ArrayList<OutputDataObjectType>();
        applicationOutputs.add(output1);
        applicationOutputs.add(output2);
        echoInterfaceId = airavataClient.registerApplicationInterface(new AuthzToken(""), DEFAULT_GATEWAY, RegisterSampleApplicationsUtils.createApplicationInterfaceDescription(echoName, echoDescription, appModules, applicationInputs, applicationOutputs));
        System.out.println("Echo Application Interface Id " + echoInterfaceId);
    } catch (TException e) {
        e.printStackTrace();
    }
}

Example 62 with OutputDataObjectType

use of org.apache.airavata.model.application.io.OutputDataObjectType in project airavata by apache.

the class RegisterSampleApplications method registerTinkerMonteInterface.

private void registerTinkerMonteInterface() {
    try {
        System.out.println("#### Registering Tinker Monte Application Interface ####");
        List<String> appModules = new ArrayList<String>();
        appModules.add(monteXModuleId);
        InputDataObjectType input1 = RegisterSampleApplicationsUtils.createAppInput("xyzf", "O16.xyz", DataType.URI, null, 1, true, true, false, "Tinker monte input_1", null);
        InputDataObjectType input2 = RegisterSampleApplicationsUtils.createAppInput("keyf", "O16.key", DataType.URI, "-k", 2, true, true, false, "Tinker monte input_2", null);
        InputDataObjectType input3 = RegisterSampleApplicationsUtils.createAppInput("stps", "20000", DataType.STRING, null, 3, true, true, false, "Tinker monte input_3", null);
        InputDataObjectType input4 = RegisterSampleApplicationsUtils.createAppInput("Ctc", "C", DataType.STRING, null, 4, true, true, false, "Tinker monte input_4", null);
        InputDataObjectType input5 = RegisterSampleApplicationsUtils.createAppInput("stpsZ", "3.0", DataType.STRING, null, 5, true, true, false, "Tinker monte input_5", null);
        InputDataObjectType input6 = RegisterSampleApplicationsUtils.createAppInput("temp", "298", DataType.STRING, null, 6, true, true, false, "Tinker monte input_6", null);
        InputDataObjectType input7 = RegisterSampleApplicationsUtils.createAppInput("Rconv", "0.01", DataType.STRING, null, 7, true, true, false, "Tinker monte input_7", null);
        List<InputDataObjectType> applicationInputs = new ArrayList<InputDataObjectType>();
        applicationInputs.add(input1);
        applicationInputs.add(input2);
        applicationInputs.add(input3);
        applicationInputs.add(input4);
        applicationInputs.add(input5);
        applicationInputs.add(input6);
        applicationInputs.add(input7);
        OutputDataObjectType output1 = RegisterSampleApplicationsUtils.createAppOutput("Diskoutputfile_with_dir", "", DataType.URI, false, false, null);
        OutputDataObjectType output2 = RegisterSampleApplicationsUtils.createAppOutput("STDOUT", null, DataType.STDOUT, true, true, null);
        OutputDataObjectType output3 = RegisterSampleApplicationsUtils.createAppOutput("STDERR", null, DataType.STDERR, true, true, null);
        List<OutputDataObjectType> applicationOutputs = new ArrayList<OutputDataObjectType>();
        applicationOutputs.add(output1);
        applicationOutputs.add(output2);
        applicationOutputs.add(output3);
        String addApplicationInterfaceId = airavataClient.registerApplicationInterface(new AuthzToken(""), DEFAULT_GATEWAY, RegisterSampleApplicationsUtils.createApplicationInterfaceDescription("Tinker_Monte", "Monte application", appModules, applicationInputs, applicationOutputs));
        System.out.println("Monte Application Interface Id " + addApplicationInterfaceId);
    } catch (TException e) {
        e.printStackTrace();
    }
}

Example 63 with OutputDataObjectType

use of org.apache.airavata.model.application.io.OutputDataObjectType in project airavata by apache.

the class RegisterSampleApplications method registerAmberInterface.

public void registerAmberInterface() {
    try {
        System.out.println("#### Registering Amber Interface #### \n");
        List<String> appModules = new ArrayList<String>();
        appModules.add(amberModuleId);
        InputDataObjectType input1 = RegisterSampleApplicationsUtils.createAppInput("Heat_Restart_File", null, DataType.URI, "-c", 1, true, true, false, "Heating up the system equilibration stage - 02_Heat.rst", null);
        InputDataObjectType input2 = RegisterSampleApplicationsUtils.createAppInput("Production_Control_File", null, DataType.URI, "-i ", 2, true, true, false, "Constant pressure and temperature for production stage - 03_Prod.in", null);
        InputDataObjectType input3 = RegisterSampleApplicationsUtils.createAppInput("Parameter_Topology_File", null, DataType.URI, "-p", 3, true, true, false, "Parameter and Topology coordinates - prmtop", null);
        List<InputDataObjectType> applicationInputs = new ArrayList<InputDataObjectType>();
        applicationInputs.add(input1);
        applicationInputs.add(input2);
        applicationInputs.add(input3);
        OutputDataObjectType output1 = RegisterSampleApplicationsUtils.createAppOutput("AMBER_Execution_Summary", "03_Prod.info", DataType.URI, true, true, "-inf");
        OutputDataObjectType output2 = RegisterSampleApplicationsUtils.createAppOutput("AMBER_Execution_log", "03_Prod.out", DataType.URI, true, true, "-o");
        OutputDataObjectType output3 = RegisterSampleApplicationsUtils.createAppOutput("AMBER_Trajectory_file", "03_Prod.mdcrd", DataType.URI, true, true, "-x");
        OutputDataObjectType output4 = RegisterSampleApplicationsUtils.createAppOutput("AMBER_Restart_file", "03_Prod.rst", DataType.URI, true, true, " -r");
        OutputDataObjectType output5 = RegisterSampleApplicationsUtils.createAppOutput("STDOUT", null, DataType.STDOUT, true, false, null);
        OutputDataObjectType output6 = RegisterSampleApplicationsUtils.createAppOutput("STDERR", null, DataType.STDERR, true, false, null);
        List<OutputDataObjectType> applicationOutputs = new ArrayList<OutputDataObjectType>();
        applicationOutputs.add(output1);
        applicationOutputs.add(output2);
        applicationOutputs.add(output3);
        applicationOutputs.add(output4);
        applicationOutputs.add(output5);
        applicationOutputs.add(output6);
        amberInterfaceId = airavataClient.registerApplicationInterface(new AuthzToken(""), DEFAULT_GATEWAY, RegisterSampleApplicationsUtils.createApplicationInterfaceDescription(amberName, amberDescription, appModules, applicationInputs, applicationOutputs));
        System.out.println("Amber Application Interface Id " + amberInterfaceId);
    } catch (TException e) {
        e.printStackTrace();
    }
}

Example 64 with OutputDataObjectType

use of org.apache.airavata.model.application.io.OutputDataObjectType in project airavata by apache.

the class RegisterSampleApplications method registerMPIInterface.

public void registerMPIInterface() {
    try {
        System.out.println("#### Registering MPI Interface #### \n");
        List<String> appModules = new ArrayList<String>();
        appModules.add(mpiModuleId);
        InputDataObjectType input1 = RegisterSampleApplicationsUtils.createAppInput("Sample_Input", "", DataType.STRING, null, 1, true, false, false, "An optional MPI source file", null);
        InputDataObjectType input11 = RegisterSampleApplicationsUtils.createAppInput("US3INPUT", "", DataType.URI, null, 1, true, false, false, "Input US3 file", null);
        InputDataObjectType input12 = RegisterSampleApplicationsUtils.createAppInput("US3INPUTARG", "", DataType.STRING, null, 1, true, false, false, "Input US3 Arg", null);
        InputDataObjectType input2 = RegisterSampleApplicationsUtils.createAppInput("NumberOfProcesses", "", DataType.INTEGER, null, 2, false, true, false, "Number Of Processes", null);
        InputDataObjectType input3 = RegisterSampleApplicationsUtils.createAppInput("ProcessesPerHost", "", DataType.INTEGER, null, 3, false, true, false, "Processes per host", null);
        List<InputDataObjectType> applicationInputs = new ArrayList<InputDataObjectType>();
        applicationInputs.add(input1);
        applicationInputs.add(input2);
        applicationInputs.add(input3);
        applicationInputs.add(input11);
        applicationInputs.add(input12);
        OutputDataObjectType output1 = RegisterSampleApplicationsUtils.createAppOutput("STDOutput", "", DataType.STDOUT, true, true, null);
        OutputDataObjectType output2 = RegisterSampleApplicationsUtils.createAppOutput("STDErr", "", DataType.STDERR, true, true, null);
        OutputDataObjectType output3 = RegisterSampleApplicationsUtils.createAppOutput("US3OUT", "", DataType.STRING, true, false, null);
        List<OutputDataObjectType> applicationOutputs = new ArrayList<OutputDataObjectType>();
        applicationOutputs.add(output1);
        applicationOutputs.add(output2);
        applicationOutputs.add(output3);
        mpiInterfaceId = airavataClient.registerApplicationInterface(new AuthzToken(""), DEFAULT_GATEWAY, RegisterSampleApplicationsUtils.createApplicationInterfaceDescription(mpiName, mpiDescription, appModules, applicationInputs, applicationOutputs));
        System.out.println("MPI Application Interface Id " + mpiInterfaceId);
    } catch (TException e) {
        e.printStackTrace();
    }
}

Example 65 with OutputDataObjectType

use of org.apache.airavata.model.application.io.OutputDataObjectType in project airavata by apache.

the class RegisterSampleApplications method registerLammpsInterface.

public void registerLammpsInterface() {
    try {
        System.out.println("#### Registering LAMMPS Interface #### \n");
        List<String> appModules = new ArrayList<String>();
        appModules.add(lammpsModuleId);
        appModules.add(lammpsModuleId1);
        InputDataObjectType input1 = RegisterSampleApplicationsUtils.createAppInput("Friction_Simulation_Input", null, DataType.URI, "<", 1, true, true, false, "Friction Simulation Input - in.friction", null);
        List<InputDataObjectType> applicationInputs = new ArrayList<InputDataObjectType>();
        applicationInputs.add(input1);
        OutputDataObjectType output1 = RegisterSampleApplicationsUtils.createAppOutput("LAMMPS_Simulation_Log", null, DataType.URI, true, true, null);
        OutputDataObjectType output2 = RegisterSampleApplicationsUtils.createAppOutput("STDOUT", null, DataType.STDOUT, true, true, null);
        OutputDataObjectType output3 = RegisterSampleApplicationsUtils.createAppOutput("STDERR", null, DataType.STDERR, true, true, null);
        List<OutputDataObjectType> applicationOutputs = new ArrayList<OutputDataObjectType>();
        applicationOutputs.add(output1);
        applicationOutputs.add(output2);
        applicationOutputs.add(output3);
        lammpsInterfaceId = airavataClient.registerApplicationInterface(new AuthzToken(""), DEFAULT_GATEWAY, RegisterSampleApplicationsUtils.createApplicationInterfaceDescription(lammpsName, lammpsDescription, appModules, applicationInputs, applicationOutputs));
        System.out.println("LAMMPS Application Interface Id " + lammpsInterfaceId);
    } catch (TException e) {
        e.printStackTrace();
    }
}