Examples with OutputDataObjectType org.apache.airavata.model.application.io.OutputDataObjectType used on opensource projects

Example 76 with OutputDataObjectType

use of org.apache.airavata.model.application.io.OutputDataObjectType in project airavata by apache.

the class CreateLaunchExperiment method createEchoExperimentForFSD.

public static String createEchoExperimentForFSD(Airavata.Client client) throws TException {
    try {
        List<InputDataObjectType> exInputs = client.getApplicationInputs(new AuthzToken(""), echoAppId);
        for (InputDataObjectType inputDataObjectType : exInputs) {
            if (inputDataObjectType.getName().equalsIgnoreCase("Input_to_Echo")) {
                inputDataObjectType.setValue("Hello World");
            } else if (inputDataObjectType.getName().equalsIgnoreCase("Input_to_Echo2")) {
                inputDataObjectType.setValue("http://www.textfiles.com/100/ad.txt");
            } else if (inputDataObjectType.getName().equalsIgnoreCase("Input_to_Echo3")) {
                inputDataObjectType.setValue("file:///tmp/test.txt");
            }
        }
        List<OutputDataObjectType> exOut = client.getApplicationOutputs(new AuthzToken(""), echoAppId);
        ExperimentModel simpleExperiment = ExperimentModelUtil.createSimpleExperiment(DEFAULT_GATEWAY, "default", "admin", "echoExperiment", "SimpleEcho2", echoAppId, exInputs);
        simpleExperiment.setExperimentOutputs(exOut);
        Map<String, String> computeResources = airavataClient.getAvailableAppInterfaceComputeResources(new AuthzToken(""), echoAppId);
        if (computeResources != null && computeResources.size() != 0) {
            for (String id : computeResources.keySet()) {
                String resourceName = computeResources.get(id);
                if (resourceName.equals(unicoreHostName)) {
                    ComputationalResourceSchedulingModel scheduling = ExperimentModelUtil.createComputationResourceScheduling(id, 1, 1, 1, "normal", 30, 1048576);
                    UserConfigurationDataModel userConfigurationData = new UserConfigurationDataModel();
                    userConfigurationData.setAiravataAutoSchedule(false);
                    userConfigurationData.setOverrideManualScheduledParams(false);
                    userConfigurationData.setComputationalResourceScheduling(scheduling);
                    userConfigurationData.setGenerateCert(false);
                    userConfigurationData.setUserDN("");
                    simpleExperiment.setUserConfigurationData(userConfigurationData);
                    return client.createExperiment(new AuthzToken(""), DEFAULT_GATEWAY, simpleExperiment);
                }
            }
        }
    } catch (AiravataSystemException e) {
        logger.error("Error occured while creating the experiment...", e.getMessage());
        throw new AiravataSystemException(e);
    } catch (InvalidRequestException e) {
        logger.error("Error occured while creating the experiment...", e.getMessage());
        throw new InvalidRequestException(e);
    } catch (AiravataClientException e) {
        logger.error("Error occured while creating the experiment...", e.getMessage());
        throw new AiravataClientException(e);
    } catch (TException e) {
        logger.error("Error occured while creating the experiment...", e.getMessage());
        throw new TException(e);
    }
    return null;
}

Example 77 with OutputDataObjectType

use of org.apache.airavata.model.application.io.OutputDataObjectType in project airavata by apache.

the class CreateLaunchExperiment method createExperimentNWCHEMStampede.

public static String createExperimentNWCHEMStampede(Airavata.Client client) throws TException {
    try {
        List<InputDataObjectType> exInputs = client.getApplicationInputs(new AuthzToken(""), nwchemAppId);
        setNWCHEMInputs(exInputs);
        List<OutputDataObjectType> exOut = client.getApplicationOutputs(new AuthzToken(""), nwchemAppId);
        ExperimentModel simpleExperiment = ExperimentModelUtil.createSimpleExperiment(DEFAULT_GATEWAY, "default", "admin", "NWchemExperiment", "Testing", nwchemAppId, exInputs);
        simpleExperiment.setExperimentOutputs(exOut);
        Map<String, String> computeResources = airavataClient.getAvailableAppInterfaceComputeResources(new AuthzToken(""), nwchemAppId);
        if (computeResources != null && computeResources.size() != 0) {
            for (String id : computeResources.keySet()) {
                String resourceName = computeResources.get(id);
                if (resourceName.equals(stampedeHostName)) {
                    ComputationalResourceSchedulingModel scheduling = ExperimentModelUtil.createComputationResourceScheduling(id, 1, 16, 1, "development", 30, 1);
                    UserConfigurationDataModel userConfigurationData = new UserConfigurationDataModel();
                    userConfigurationData.setAiravataAutoSchedule(false);
                    userConfigurationData.setOverrideManualScheduledParams(false);
                    userConfigurationData.setComputationalResourceScheduling(scheduling);
                    simpleExperiment.setUserConfigurationData(userConfigurationData);
                    return client.createExperiment(new AuthzToken(""), DEFAULT_GATEWAY, simpleExperiment);
                }
            }
        }
    } catch (AiravataSystemException e) {
        logger.error("Error occured while creating the experiment...", e.getMessage());
        throw new AiravataSystemException(e);
    } catch (InvalidRequestException e) {
        logger.error("Error occured while creating the experiment...", e.getMessage());
        throw new InvalidRequestException(e);
    } catch (AiravataClientException e) {
        logger.error("Error occured while creating the experiment...", e.getMessage());
        throw new AiravataClientException(e);
    } catch (TException e) {
        logger.error("Error occured while creating the experiment...", e.getMessage());
        throw new TException(e);
    }
    return null;
}

Example 78 with OutputDataObjectType

use of org.apache.airavata.model.application.io.OutputDataObjectType in project airavata by apache.

the class ExperimentModelUtil method cloneProcessFromExperiment.

public static ProcessModel cloneProcessFromExperiment(ExperimentModel experiment) {
    ProcessModel processModel = new ProcessModel();
    processModel.setCreationTime(experiment.getCreationTime());
    processModel.setExperimentId(experiment.getExperimentId());
    processModel.setApplicationInterfaceId(experiment.getExecutionId());
    processModel.setEnableEmailNotification(experiment.isEnableEmailNotification());
    List<String> emailAddresses = experiment.getEmailAddresses();
    if (emailAddresses != null && !emailAddresses.isEmpty()) {
        processModel.setEmailAddresses(emailAddresses);
    }
    List<InputDataObjectType> experimentInputs = experiment.getExperimentInputs();
    if (experimentInputs != null) {
        processModel.setProcessInputs(experimentInputs);
    }
    List<OutputDataObjectType> experimentOutputs = experiment.getExperimentOutputs();
    if (experimentOutputs != null) {
        processModel.setProcessOutputs(experimentOutputs);
    }
    UserConfigurationDataModel configData = experiment.getUserConfigurationData();
    if (configData != null) {
        processModel.setStorageResourceId(configData.getStorageId());
        processModel.setExperimentDataDir(configData.getExperimentDataDir());
        processModel.setGenerateCert(configData.isGenerateCert());
        processModel.setUserDn(configData.getUserDN());
        ComputationalResourceSchedulingModel scheduling = configData.getComputationalResourceScheduling();
        if (scheduling != null) {
            processModel.setProcessResourceSchedule(scheduling);
            processModel.setComputeResourceId(scheduling.getResourceHostId());
        }
        processModel.setUseUserCRPref(configData.isUseUserCRPref());
    }
    processModel.setUserName(experiment.getUserName());
    return processModel;
}

Example 79 with OutputDataObjectType

use of org.apache.airavata.model.application.io.OutputDataObjectType in project airavata by apache.

the class RegisterSampleApplications method registerWRFInterface.

public void registerWRFInterface() {
    try {
        System.out.println("#### Registering WRF Interface #### \n");
        List<String> appModules = new ArrayList<String>();
        appModules.add(wrfModuleId);
        InputDataObjectType input1 = RegisterSampleApplicationsUtils.createAppInput("Config_Namelist_File", null, DataType.URI, null, 1, true, true, false, "Namelist Configuration File - namelist.input", null);
        InputDataObjectType input2 = RegisterSampleApplicationsUtils.createAppInput("WRF_Initial_Conditions", null, DataType.URI, null, 2, true, true, false, "Initial Conditions File - wrfinput_d01", null);
        InputDataObjectType input3 = RegisterSampleApplicationsUtils.createAppInput("WRF_Boundary_File", null, DataType.URI, null, 3, true, true, false, "Boundary Conditions File - wrfbdy_d01", null);
        List<InputDataObjectType> applicationInputs = new ArrayList<InputDataObjectType>();
        applicationInputs.add(input1);
        applicationInputs.add(input2);
        applicationInputs.add(input3);
        OutputDataObjectType output1 = RegisterSampleApplicationsUtils.createAppOutput("WRF_Output", "", DataType.URI, true, true, null);
        OutputDataObjectType output2 = RegisterSampleApplicationsUtils.createAppOutput("WRF_Execution_Log", "", DataType.URI, true, true, null);
        OutputDataObjectType output3 = RegisterSampleApplicationsUtils.createAppOutput("STDOUT", null, DataType.STDOUT, true, true, null);
        OutputDataObjectType output4 = RegisterSampleApplicationsUtils.createAppOutput("STDERR", null, DataType.STDERR, true, true, null);
        List<OutputDataObjectType> applicationOutputs = new ArrayList<OutputDataObjectType>();
        applicationOutputs.add(output1);
        applicationOutputs.add(output2);
        applicationOutputs.add(output3);
        applicationOutputs.add(output4);
        wrfInterfaceId = airavataClient.registerApplicationInterface(new AuthzToken(""), DEFAULT_GATEWAY, RegisterSampleApplicationsUtils.createApplicationInterfaceDescription(wrfName, wrfDescription, appModules, applicationInputs, applicationOutputs));
        System.out.println("WRF Application Interface Id " + wrfInterfaceId);
    } catch (TException e) {
        e.printStackTrace();
    }
}

Example 80 with OutputDataObjectType

use of org.apache.airavata.model.application.io.OutputDataObjectType in project airavata by apache.

the class RegisterSampleApplications method registerLocalEchoInterface.

public void registerLocalEchoInterface() {
    try {
        System.out.println("#### Registering Echo Interface #### \n");
        List<String> appModules = new ArrayList<String>();
        appModules.add(echoModuleId);
        InputDataObjectType input1 = RegisterSampleApplicationsUtils.createAppInput("echo_input", "echo_output=Hello World", DataType.STRING, null, 1, false, false, false, "A test string to Echo", null);
        List<InputDataObjectType> applicationInputs = new ArrayList<InputDataObjectType>();
        applicationInputs.add(input1);
        OutputDataObjectType output1 = RegisterSampleApplicationsUtils.createAppOutput("STDOUT", "", DataType.STDOUT, false, false, null);
        OutputDataObjectType output2 = RegisterSampleApplicationsUtils.createAppOutput("STDERR", "", DataType.STDERR, false, false, null);
        List<OutputDataObjectType> applicationOutputs = new ArrayList<OutputDataObjectType>();
        applicationOutputs.add(output1);
        applicationOutputs.add(output2);
        echoLocalInterfaceId = airavataClient.registerApplicationInterface(new AuthzToken(""), DEFAULT_GATEWAY, RegisterSampleApplicationsUtils.createApplicationInterfaceDescription(echoName, echoDescription, appModules, applicationInputs, applicationOutputs));
        System.out.println("Local Echo Application Interface Id " + echoLocalInterfaceId);
    } catch (TException e) {
        e.printStackTrace();
    }
}