Examples with OutputDataObjectType org.apache.airavata.model.application.io.OutputDataObjectType used on opensource projects

Example 66 with OutputDataObjectType

use of org.apache.airavata.model.application.io.OutputDataObjectType in project airavata by apache.

the class AiravataServerHandler method cloneExperimentInternal.

private String cloneExperimentInternal(RegistryService.Client regClient, SharingRegistryService.Client sharingClient, AuthzToken authzToken, String existingExperimentID, String newExperimentName, String newExperimentProjectId, ExperimentModel existingExperiment) throws ExperimentNotFoundException, ProjectNotFoundException, TException, AuthorizationException, ApplicationSettingsException {
    if (existingExperiment == null) {
        logger.error(existingExperimentID, "Error while cloning experiment {}, experiment doesn't exist.", existingExperimentID);
        throw new ExperimentNotFoundException("Requested experiment id " + existingExperimentID + " does not exist in the system..");
    }
    if (newExperimentProjectId != null) {
        // getProject will apply sharing permissions
        Project project = this.getProject(authzToken, newExperimentProjectId);
        if (project == null) {
            logger.error("Error while cloning experiment {}, project {} doesn't exist.", existingExperimentID, newExperimentProjectId);
            throw new ProjectNotFoundException("Requested project id " + newExperimentProjectId + " does not exist in the system..");
        }
        existingExperiment.setProjectId(project.getProjectID());
    }
    // make sure user has write access to the project
    String gatewayId = authzToken.getClaimsMap().get(Constants.GATEWAY_ID);
    String userId = authzToken.getClaimsMap().get(Constants.USER_NAME);
    if (!sharingClient.userHasAccess(gatewayId, userId + "@" + gatewayId, existingExperiment.getProjectId(), gatewayId + ":WRITE")) {
        logger.error("Error while cloning experiment {}, user doesn't have write access to project {}", existingExperimentID, existingExperiment.getProjectId());
        throw new AuthorizationException("User does not have permission to clone an experiment in this project");
    }
    existingExperiment.setCreationTime(AiravataUtils.getCurrentTimestamp().getTime());
    if (existingExperiment.getExecutionId() != null) {
        List<OutputDataObjectType> applicationOutputs = regClient.getApplicationOutputs(existingExperiment.getExecutionId());
        existingExperiment.setExperimentOutputs(applicationOutputs);
    }
    if (validateString(newExperimentName)) {
        existingExperiment.setExperimentName(newExperimentName);
    }
    if (existingExperiment.getErrors() != null) {
        existingExperiment.getErrors().clear();
    }
    if (existingExperiment.getUserConfigurationData() != null && existingExperiment.getUserConfigurationData().getComputationalResourceScheduling() != null) {
        String compResourceId = existingExperiment.getUserConfigurationData().getComputationalResourceScheduling().getResourceHostId();
        ComputeResourceDescription computeResourceDescription = regClient.getComputeResource(compResourceId);
        if (!computeResourceDescription.isEnabled()) {
            existingExperiment.getUserConfigurationData().setComputationalResourceScheduling(null);
        }
    }
    logger.debug("Airavata cloned experiment with experiment id : " + existingExperimentID);
    existingExperiment.setUserName(userId);
    String expId = regClient.createExperiment(gatewayId, existingExperiment);
    if (ServerSettings.isEnableSharing()) {
        try {
            Entity entity = new Entity();
            entity.setEntityId(expId);
            entity.setDomainId(existingExperiment.getGatewayId());
            entity.setEntityTypeId(existingExperiment.getGatewayId() + ":" + "EXPERIMENT");
            entity.setOwnerId(existingExperiment.getUserName() + "@" + existingExperiment.getGatewayId());
            entity.setName(existingExperiment.getExperimentName());
            entity.setDescription(existingExperiment.getDescription());
            sharingClient.createEntity(entity);
        } catch (Exception ex) {
            logger.error(ex.getMessage(), ex);
            logger.error("rolling back experiment creation Exp ID : " + expId);
            regClient.deleteExperiment(expId);
        }
    }
    return expId;
}

Example 67 with OutputDataObjectType

use of org.apache.airavata.model.application.io.OutputDataObjectType in project airavata by apache.

the class CreateLaunchBES method createEchoExperimentForFSD.

public static String createEchoExperimentForFSD(Airavata.Client client) throws TException {
    try {
        List<InputDataObjectType> exInputs = client.getApplicationInputs(new AuthzToken(""), echoAppId);
        for (InputDataObjectType inputDataObjectType : exInputs) {
            if (inputDataObjectType.getName().equalsIgnoreCase("Input_to_Echo")) {
                inputDataObjectType.setValue("Hello World");
            } else if (inputDataObjectType.getName().equalsIgnoreCase("Input_to_Echo2")) {
                inputDataObjectType.setValue("http://www.textfiles.com/100/ad.txt");
            } else if (inputDataObjectType.getName().equalsIgnoreCase("Input_to_Echo3")) {
                inputDataObjectType.setValue("file:///tmp/test.txt");
            }
        }
        List<OutputDataObjectType> exOut = client.getApplicationOutputs(new AuthzToken(""), echoAppId);
        ExperimentModel simpleExperiment = ExperimentModelUtil.createSimpleExperiment(DEFAULT_GATEWAY, "default", "admin", "echoExperiment", "SimpleEcho2", echoAppId, exInputs);
        simpleExperiment.setExperimentOutputs(exOut);
        Map<String, String> computeResources = airavataClient.getAvailableAppInterfaceComputeResources(new AuthzToken(""), echoAppId);
        if (computeResources != null && computeResources.size() != 0) {
            for (String id : computeResources.keySet()) {
                String resourceName = computeResources.get(id);
                if (resourceName.equals(unicoreHostName)) {
                    ComputationalResourceSchedulingModel scheduling = ExperimentModelUtil.createComputationResourceScheduling(id, 1, 1, 1, "normal", 30, 1048576);
                    UserConfigurationDataModel userConfigurationData = new UserConfigurationDataModel();
                    userConfigurationData.setAiravataAutoSchedule(false);
                    userConfigurationData.setOverrideManualScheduledParams(false);
                    userConfigurationData.setComputationalResourceScheduling(scheduling);
                    userConfigurationData.setGenerateCert(false);
                    userConfigurationData.setUserDN("");
                    return client.createExperiment(new AuthzToken(""), DEFAULT_GATEWAY, simpleExperiment);
                }
            }
        }
    } catch (AiravataSystemException e) {
        logger.error("Error occured while creating the experiment...", e.getMessage());
        throw new AiravataSystemException(e);
    } catch (InvalidRequestException e) {
        logger.error("Error occured while creating the experiment...", e.getMessage());
        throw new InvalidRequestException(e);
    } catch (AiravataClientException e) {
        logger.error("Error occured while creating the experiment...", e.getMessage());
        throw new AiravataClientException(e);
    } catch (TException e) {
        logger.error("Error occured while creating the experiment...", e.getMessage());
        throw new TException(e);
    }
    return null;
}

Example 68 with OutputDataObjectType

use of org.apache.airavata.model.application.io.OutputDataObjectType in project airavata by apache.

the class CreateLaunchExperiment method createExperimentEchoForLocalHost.

public static String createExperimentEchoForLocalHost(Airavata.Client client) throws TException {
    try {
        List<InputDataObjectType> exInputs = client.getApplicationInputs(new AuthzToken(""), echoAppId);
        for (InputDataObjectType inputDataObjectType : exInputs) {
            if (inputDataObjectType.getName().equalsIgnoreCase("Input_to_Echo")) {
                inputDataObjectType.setValue("Hello World");
            }
        }
        List<OutputDataObjectType> exOut = client.getApplicationOutputs(new AuthzToken(""), echoAppId);
        Project project = ProjectModelUtil.createProject("project1", "admin", "test project");
        String projectId = client.createProject(new AuthzToken(""), DEFAULT_GATEWAY, project);
        ExperimentModel simpleExperiment = ExperimentModelUtil.createSimpleExperiment(DEFAULT_GATEWAY, projectId, "admin", "echoExperiment", "Echo Test", echoAppId, exInputs);
        simpleExperiment.setExperimentOutputs(exOut);
        Map<String, String> computeResources = airavataClient.getAvailableAppInterfaceComputeResources(new AuthzToken(""), echoAppId);
        if (computeResources != null && computeResources.size() != 0) {
            for (String id : computeResources.keySet()) {
                String resourceName = computeResources.get(id);
                if (resourceName.equals(localHost)) {
                    ComputationalResourceSchedulingModel scheduling = ExperimentModelUtil.createComputationResourceScheduling(id, 1, 1, 1, "normal", 30, 1);
                    UserConfigurationDataModel userConfigurationData = new UserConfigurationDataModel();
                    userConfigurationData.setAiravataAutoSchedule(false);
                    userConfigurationData.setOverrideManualScheduledParams(false);
                    userConfigurationData.setComputationalResourceScheduling(scheduling);
                    simpleExperiment.setUserConfigurationData(userConfigurationData);
                    return client.createExperiment(new AuthzToken(""), DEFAULT_GATEWAY, simpleExperiment);
                }
            }
        }
    } catch (AiravataSystemException e) {
        logger.error("Error occured while creating the experiment...", e.getMessage());
        throw new AiravataSystemException(e);
    } catch (InvalidRequestException e) {
        logger.error("Error occured while creating the experiment...", e.getMessage());
        throw new InvalidRequestException(e);
    } catch (AiravataClientException e) {
        logger.error("Error occured while creating the experiment...", e.getMessage());
        throw new AiravataClientException(e);
    } catch (TException e) {
        logger.error("Error occured while creating the experiment...", e.getMessage());
        throw new TException(e);
    }
    return null;
}

Example 69 with OutputDataObjectType

use of org.apache.airavata.model.application.io.OutputDataObjectType in project airavata by apache.

the class CreateLaunchExperiment method createExperimentGROMACSStampede.

public static String createExperimentGROMACSStampede(Airavata.Client client) throws TException {
    try {
        List<InputDataObjectType> exInputs = client.getApplicationInputs(new AuthzToken(""), gromacsAppId);
        setGROMACSInputs(exInputs);
        List<OutputDataObjectType> exOut = client.getApplicationOutputs(new AuthzToken(""), gromacsAppId);
        ExperimentModel simpleExperiment = ExperimentModelUtil.createSimpleExperiment(DEFAULT_GATEWAY, "default", "admin", "GromacsExperiment", "Testing", gromacsAppId, exInputs);
        simpleExperiment.setExperimentOutputs(exOut);
        Map<String, String> computeResources = airavataClient.getAvailableAppInterfaceComputeResources(new AuthzToken(""), gromacsAppId);
        if (computeResources != null && computeResources.size() != 0) {
            for (String id : computeResources.keySet()) {
                String resourceName = computeResources.get(id);
                if (resourceName.equals(stampedeHostName)) {
                    ComputationalResourceSchedulingModel scheduling = ExperimentModelUtil.createComputationResourceScheduling(id, 1, 16, 1, "development", 30, 1);
                    UserConfigurationDataModel userConfigurationData = new UserConfigurationDataModel();
                    userConfigurationData.setAiravataAutoSchedule(false);
                    userConfigurationData.setOverrideManualScheduledParams(false);
                    userConfigurationData.setComputationalResourceScheduling(scheduling);
                    simpleExperiment.setUserConfigurationData(userConfigurationData);
                    return client.createExperiment(new AuthzToken(""), DEFAULT_GATEWAY, simpleExperiment);
                }
            }
        }
    } catch (AiravataSystemException e) {
        logger.error("Error occured while creating the experiment...", e.getMessage());
        throw new AiravataSystemException(e);
    } catch (InvalidRequestException e) {
        logger.error("Error occured while creating the experiment...", e.getMessage());
        throw new InvalidRequestException(e);
    } catch (AiravataClientException e) {
        logger.error("Error occured while creating the experiment...", e.getMessage());
        throw new AiravataClientException(e);
    } catch (TException e) {
        logger.error("Error occured while creating the experiment...", e.getMessage());
        throw new TException(e);
    }
    return null;
}

Example 70 with OutputDataObjectType

use of org.apache.airavata.model.application.io.OutputDataObjectType in project airavata by apache.

the class CreateLaunchExperiment method createExperimentLAMMPSStampede.

public static String createExperimentLAMMPSStampede(Airavata.Client client) throws TException {
    try {
        List<InputDataObjectType> exInputs = client.getApplicationInputs(new AuthzToken(""), lammpsAppId);
        setLAMMPSInputs(exInputs);
        List<OutputDataObjectType> exOut = client.getApplicationOutputs(new AuthzToken(""), lammpsAppId);
        ExperimentModel simpleExperiment = ExperimentModelUtil.createSimpleExperiment(DEFAULT_GATEWAY, "default", "admin", "LAMMPSExperiment", "Testing", lammpsAppId, exInputs);
        simpleExperiment.setExperimentOutputs(exOut);
        Map<String, String> computeResources = airavataClient.getAvailableAppInterfaceComputeResources(new AuthzToken(""), lammpsAppId);
        if (computeResources != null && computeResources.size() != 0) {
            for (String id : computeResources.keySet()) {
                String resourceName = computeResources.get(id);
                if (resourceName.equals(stampedeHostName)) {
                    ComputationalResourceSchedulingModel scheduling = ExperimentModelUtil.createComputationResourceScheduling(id, 1, 16, 1, "development", 30, 1);
                    UserConfigurationDataModel userConfigurationData = new UserConfigurationDataModel();
                    userConfigurationData.setAiravataAutoSchedule(false);
                    userConfigurationData.setOverrideManualScheduledParams(false);
                    userConfigurationData.setComputationalResourceScheduling(scheduling);
                    simpleExperiment.setUserConfigurationData(userConfigurationData);
                    return client.createExperiment(new AuthzToken(""), DEFAULT_GATEWAY, simpleExperiment);
                }
            }
        }
    } catch (AiravataSystemException e) {
        logger.error("Error occured while creating the experiment...", e.getMessage());
        throw new AiravataSystemException(e);
    } catch (InvalidRequestException e) {
        logger.error("Error occured while creating the experiment...", e.getMessage());
        throw new InvalidRequestException(e);
    } catch (AiravataClientException e) {
        logger.error("Error occured while creating the experiment...", e.getMessage());
        throw new AiravataClientException(e);
    } catch (TException e) {
        logger.error("Error occured while creating the experiment...", e.getMessage());
        throw new TException(e);
    }
    return null;
}