Examples with AuthzToken org.apache.airavata.model.security.AuthzToken used on opensource projects

Example 71 with AuthzToken

use of org.apache.airavata.model.security.AuthzToken in project airavata by apache.

the class CreateLaunchExperiment method createExperimentEchoForLocalHost.

public static String createExperimentEchoForLocalHost(Airavata.Client client) throws TException {
    try {
        List<InputDataObjectType> exInputs = client.getApplicationInputs(new AuthzToken(""), echoAppId);
        for (InputDataObjectType inputDataObjectType : exInputs) {
            if (inputDataObjectType.getName().equalsIgnoreCase("Input_to_Echo")) {
                inputDataObjectType.setValue("Hello World");
            }
        }
        List<OutputDataObjectType> exOut = client.getApplicationOutputs(new AuthzToken(""), echoAppId);
        Project project = ProjectModelUtil.createProject("project1", "admin", "test project");
        String projectId = client.createProject(new AuthzToken(""), DEFAULT_GATEWAY, project);
        ExperimentModel simpleExperiment = ExperimentModelUtil.createSimpleExperiment(DEFAULT_GATEWAY, projectId, "admin", "echoExperiment", "Echo Test", echoAppId, exInputs);
        simpleExperiment.setExperimentOutputs(exOut);
        Map<String, String> computeResources = airavataClient.getAvailableAppInterfaceComputeResources(new AuthzToken(""), echoAppId);
        if (computeResources != null && computeResources.size() != 0) {
            for (String id : computeResources.keySet()) {
                String resourceName = computeResources.get(id);
                if (resourceName.equals(localHost)) {
                    ComputationalResourceSchedulingModel scheduling = ExperimentModelUtil.createComputationResourceScheduling(id, 1, 1, 1, "normal", 30, 1);
                    UserConfigurationDataModel userConfigurationData = new UserConfigurationDataModel();
                    userConfigurationData.setAiravataAutoSchedule(false);
                    userConfigurationData.setOverrideManualScheduledParams(false);
                    userConfigurationData.setComputationalResourceScheduling(scheduling);
                    simpleExperiment.setUserConfigurationData(userConfigurationData);
                    return client.createExperiment(new AuthzToken(""), DEFAULT_GATEWAY, simpleExperiment);
                }
            }
        }
    } catch (AiravataSystemException e) {
        logger.error("Error occured while creating the experiment...", e.getMessage());
        throw new AiravataSystemException(e);
    } catch (InvalidRequestException e) {
        logger.error("Error occured while creating the experiment...", e.getMessage());
        throw new InvalidRequestException(e);
    } catch (AiravataClientException e) {
        logger.error("Error occured while creating the experiment...", e.getMessage());
        throw new AiravataClientException(e);
    } catch (TException e) {
        logger.error("Error occured while creating the experiment...", e.getMessage());
        throw new TException(e);
    }
    return null;
}

Example 72 with AuthzToken

use of org.apache.airavata.model.security.AuthzToken in project airavata by apache.

the class CreateLaunchExperiment method createExperimentGROMACSStampede.

public static String createExperimentGROMACSStampede(Airavata.Client client) throws TException {
    try {
        List<InputDataObjectType> exInputs = client.getApplicationInputs(new AuthzToken(""), gromacsAppId);
        setGROMACSInputs(exInputs);
        List<OutputDataObjectType> exOut = client.getApplicationOutputs(new AuthzToken(""), gromacsAppId);
        ExperimentModel simpleExperiment = ExperimentModelUtil.createSimpleExperiment(DEFAULT_GATEWAY, "default", "admin", "GromacsExperiment", "Testing", gromacsAppId, exInputs);
        simpleExperiment.setExperimentOutputs(exOut);
        Map<String, String> computeResources = airavataClient.getAvailableAppInterfaceComputeResources(new AuthzToken(""), gromacsAppId);
        if (computeResources != null && computeResources.size() != 0) {
            for (String id : computeResources.keySet()) {
                String resourceName = computeResources.get(id);
                if (resourceName.equals(stampedeHostName)) {
                    ComputationalResourceSchedulingModel scheduling = ExperimentModelUtil.createComputationResourceScheduling(id, 1, 16, 1, "development", 30, 1);
                    UserConfigurationDataModel userConfigurationData = new UserConfigurationDataModel();
                    userConfigurationData.setAiravataAutoSchedule(false);
                    userConfigurationData.setOverrideManualScheduledParams(false);
                    userConfigurationData.setComputationalResourceScheduling(scheduling);
                    simpleExperiment.setUserConfigurationData(userConfigurationData);
                    return client.createExperiment(new AuthzToken(""), DEFAULT_GATEWAY, simpleExperiment);
                }
            }
        }
    } catch (AiravataSystemException e) {
        logger.error("Error occured while creating the experiment...", e.getMessage());
        throw new AiravataSystemException(e);
    } catch (InvalidRequestException e) {
        logger.error("Error occured while creating the experiment...", e.getMessage());
        throw new InvalidRequestException(e);
    } catch (AiravataClientException e) {
        logger.error("Error occured while creating the experiment...", e.getMessage());
        throw new AiravataClientException(e);
    } catch (TException e) {
        logger.error("Error occured while creating the experiment...", e.getMessage());
        throw new TException(e);
    }
    return null;
}

Example 73 with AuthzToken

use of org.apache.airavata.model.security.AuthzToken in project airavata by apache.

the class CreateLaunchExperiment method createExperimentLAMMPSStampede.

public static String createExperimentLAMMPSStampede(Airavata.Client client) throws TException {
    try {
        List<InputDataObjectType> exInputs = client.getApplicationInputs(new AuthzToken(""), lammpsAppId);
        setLAMMPSInputs(exInputs);
        List<OutputDataObjectType> exOut = client.getApplicationOutputs(new AuthzToken(""), lammpsAppId);
        ExperimentModel simpleExperiment = ExperimentModelUtil.createSimpleExperiment(DEFAULT_GATEWAY, "default", "admin", "LAMMPSExperiment", "Testing", lammpsAppId, exInputs);
        simpleExperiment.setExperimentOutputs(exOut);
        Map<String, String> computeResources = airavataClient.getAvailableAppInterfaceComputeResources(new AuthzToken(""), lammpsAppId);
        if (computeResources != null && computeResources.size() != 0) {
            for (String id : computeResources.keySet()) {
                String resourceName = computeResources.get(id);
                if (resourceName.equals(stampedeHostName)) {
                    ComputationalResourceSchedulingModel scheduling = ExperimentModelUtil.createComputationResourceScheduling(id, 1, 16, 1, "development", 30, 1);
                    UserConfigurationDataModel userConfigurationData = new UserConfigurationDataModel();
                    userConfigurationData.setAiravataAutoSchedule(false);
                    userConfigurationData.setOverrideManualScheduledParams(false);
                    userConfigurationData.setComputationalResourceScheduling(scheduling);
                    simpleExperiment.setUserConfigurationData(userConfigurationData);
                    return client.createExperiment(new AuthzToken(""), DEFAULT_GATEWAY, simpleExperiment);
                }
            }
        }
    } catch (AiravataSystemException e) {
        logger.error("Error occured while creating the experiment...", e.getMessage());
        throw new AiravataSystemException(e);
    } catch (InvalidRequestException e) {
        logger.error("Error occured while creating the experiment...", e.getMessage());
        throw new InvalidRequestException(e);
    } catch (AiravataClientException e) {
        logger.error("Error occured while creating the experiment...", e.getMessage());
        throw new AiravataClientException(e);
    } catch (TException e) {
        logger.error("Error occured while creating the experiment...", e.getMessage());
        throw new TException(e);
    }
    return null;
}

Example 74 with AuthzToken

use of org.apache.airavata.model.security.AuthzToken in project airavata by apache.

the class CreateLaunchExperiment method createExperimentForBR2.

// public static String createEchoExperimentForLonestar(Airavata.Client client) throws TException {
// try {
// List<OutputDataObjectType> exInputs = new ArrayList<OutputDataObjectType>();
// OutputDataObjectType input = new OutputDataObjectType();
// input.setName("echo_input");
// input.setType(DataType.STRING);
// input.setValue("Echoed_Output=Hello World");
// exInputs.add(input);
// 
// List<OutputDataObjectType> exOut = new ArrayList<OutputDataObjectType>();
// OutputDataObjectType output = new OutputDataObjectType();
// output.setName("Echoed_Output");
// output.setType(DataType.STRING);
// output.setValue("");
// exOut.add(output);
// 
// Project project = ProjectModelUtil.createProject("default", "admin", "test project");
// String projectId = client.createProject(project);
// 
// ExperimentModel simpleExperiment =
// ExperimentModelUtil.createSimpleExperiment(projectId, "admin", "echoExperiment", "SimpleEcho4", echoAppId, exInputs);
// simpleExperiment.setExperimentOutputs(exOut);
// 
// Map<String, String> computeResources = airavataClient.getAvailableAppInterfaceComputeResources(echoAppId);
// if (computeResources != null && computeResources.size() != 0){
// for (String id : computeResources.keySet()){
// String resourceName = computeResources.get(id);
// if (resourceName.equals(stampedeHostName)){
// ComputationalResourceSchedulingModel scheduling = ExperimentModelUtil.createComputationResourceScheduling(id, 1, 1, 1, "normal", 1, 0, 1, "TG-STA110014S");
// UserConfigurationDataModel userConfigurationData = new UserConfigurationDataModel();
// userConfigurationData.setAiravataAutoSchedule(false);
// userConfigurationData.setOverrideManualScheduledParams(false);
// userConfigurationData.setComputationalResourceScheduling(scheduling);
// simpleExperiment.setUserConfigurationData(userConfigurationData);
// return client.createExperiment(simpleExperiment);
// }
// }
// }
// ComputationalResourceSchedulingModel scheduling =
// ExperimentModelUtil.createComputationResourceScheduling(sgeAppId.split(",")[0], 1, 1, 1, "normal", 1, 0, 1, "TG-STA110014S");
// UserConfigurationDataModel userConfigurationData = new UserConfigurationDataModel();
// userConfigurationData.setAiravataAutoSchedule(false);
// userConfigurationData.setOverrideManualScheduledParams(false);
// userConfigurationData.setComputationalResourceScheduling(scheduling);
// simpleExperiment.setUserConfigurationData(userConfigurationData);
// return client.createExperiment(simpleExperiment);
// } catch (AiravataSystemException e) {
// logger.error("Error occured while creating the experiment...", e.getMessage());
// throw new AiravataSystemException(e);
// } catch (InvalidRequestException e) {
// logger.error("Error occured while creating the experiment...", e.getMessage());
// throw new InvalidRequestException(e);
// } catch (AiravataClientException e) {
// logger.error("Error occured while creating the experiment...", e.getMessage());
// throw new AiravataClientException(e);
// } catch (LaunchValidationException e) {
// logger.error("Validation failed" + e.getErrorMessage());
// org.apache.airavata.model.error.ValidationResults validationResult = e.getValidationResult();
// for (org.apache.airavata.model.error.ValidatorResult vResult : validationResult.getValidationResultList()) {
// if (!vResult.isSetResult()) {
// System.out.println("Error:" + vResult.getErrorDetails());
// }
// }
// throw e;
// } catch (TException e) {
// logger.error("Error occured while creating the experiment...", e.getMessage());
// throw new TException(e);
// }
// }
public static String createExperimentForBR2(Airavata.Client client) throws TException {
    try {
        List<InputDataObjectType> exInputs = client.getApplicationInputs(new AuthzToken(""), echoAppId);
        for (InputDataObjectType inputDataObjectType : exInputs) {
            if (inputDataObjectType.getName().equalsIgnoreCase("Input_to_Echo")) {
                inputDataObjectType.setValue("Hello World");
            }
        }
        List<OutputDataObjectType> exOut = client.getApplicationOutputs(new AuthzToken(""), echoAppId);
        Project project = ProjectModelUtil.createProject("default", "lahiru", "test project");
        String projectId = client.createProject(new AuthzToken(""), DEFAULT_GATEWAY, project);
        ExperimentModel simpleExperiment = ExperimentModelUtil.createSimpleExperiment(DEFAULT_GATEWAY, projectId, "lahiru", "sshEchoExperiment", "SimpleEchoBR", echoAppId, exInputs);
        simpleExperiment.setExperimentOutputs(exOut);
        Map<String, String> computeResources = airavataClient.getAvailableAppInterfaceComputeResources(new AuthzToken(""), echoAppId);
        if (computeResources != null && computeResources.size() != 0) {
            for (String id : computeResources.keySet()) {
                String resourceName = computeResources.get(id);
                if (resourceName.equals(br2HostName)) {
                    ComputationalResourceSchedulingModel scheduling = ExperimentModelUtil.createComputationResourceScheduling(id, 1, 1, 1, "normal", 30, 1);
                    UserConfigurationDataModel userConfigurationData = new UserConfigurationDataModel();
                    userConfigurationData.setAiravataAutoSchedule(false);
                    userConfigurationData.setOverrideManualScheduledParams(false);
                    userConfigurationData.setComputationalResourceScheduling(scheduling);
                    simpleExperiment.setUserConfigurationData(userConfigurationData);
                    return client.createExperiment(new AuthzToken(""), DEFAULT_GATEWAY, simpleExperiment);
                }
            }
        }
    } catch (AiravataSystemException e) {
        logger.error("Error occured while creating the experiment...", e.getMessage());
        throw new AiravataSystemException(e);
    } catch (InvalidRequestException e) {
        logger.error("Error occured while creating the experiment...", e.getMessage());
        throw new InvalidRequestException(e);
    } catch (AiravataClientException e) {
        logger.error("Error occured while creating the experiment...", e.getMessage());
        throw new AiravataClientException(e);
    } catch (TException e) {
        logger.error("Error occured while creating the experiment...", e.getMessage());
        throw new TException(e);
    }
    return null;
}

Example 75 with AuthzToken

use of org.apache.airavata.model.security.AuthzToken in project airavata by apache.

the class CreateLaunchExperiment method registerUnicoreEndpoint.

public static String registerUnicoreEndpoint(String hostName, String hostDesc, JobSubmissionProtocol protocol, SecurityProtocol securityProtocol) throws TException {
    ComputeResourceDescription computeResourceDescription = RegisterSampleApplicationsUtils.createComputeResourceDescription(hostName, hostDesc, null, null);
    fsdResourceId = airavataClient.registerComputeResource(new AuthzToken(""), computeResourceDescription);
    if (fsdResourceId.isEmpty())
        throw new AiravataClientException();
    System.out.println("FSD Compute ResourceID: " + fsdResourceId);
    JobSubmissionInterface jobSubmission = RegisterSampleApplicationsUtils.createJobSubmissionInterface(fsdResourceId, protocol, 2);
    UnicoreJobSubmission ucrJobSubmission = new UnicoreJobSubmission();
    ucrJobSubmission.setSecurityProtocol(securityProtocol);
    ucrJobSubmission.setUnicoreEndPointURL(unicoreEndPointURL);
    return jobSubmission.getJobSubmissionInterfaceId();
}