Examples with AuthzToken org.apache.airavata.model.security.AuthzToken used on opensource projects

Example 76 with AuthzToken

use of org.apache.airavata.model.security.AuthzToken in project airavata by apache.

the class CreateLaunchExperiment method createExperimentForTrestlesAmber.

public static String createExperimentForTrestlesAmber(Airavata.Client client) throws TException {
    try {
        List<InputDataObjectType> exInputs = client.getApplicationInputs(new AuthzToken(""), amberAppId);
        // }
        for (InputDataObjectType inputDataObjectType : exInputs) {
            if (inputDataObjectType.getName().equalsIgnoreCase("Heat_Restart_File")) {
                inputDataObjectType.setValue("/Users/chathuri/dev/airavata/source/php/inputs/AMBER_FILES/02_Heat.rst");
            } else if (inputDataObjectType.getName().equalsIgnoreCase("Production_Control_File")) {
                inputDataObjectType.setValue("/Users/chathuri/dev/airavata/source/php/inputs/AMBER_FILES/03_Prod.in");
            } else if (inputDataObjectType.getName().equalsIgnoreCase("Parameter_Topology_File")) {
                inputDataObjectType.setValue("/Users/chathuri/dev/airavata/source/php/inputs/AMBER_FILES/prmtop");
            }
        }
        List<OutputDataObjectType> exOut = client.getApplicationOutputs(new AuthzToken(""), amberAppId);
        Project project = ProjectModelUtil.createProject("default", "admin", "test project");
        String projectId = client.createProject(new AuthzToken(""), DEFAULT_GATEWAY, project);
        ExperimentModel simpleExperiment = ExperimentModelUtil.createSimpleExperiment(DEFAULT_GATEWAY, projectId, "admin", "sshEchoExperiment", "SimpleEchoBR", amberAppId, exInputs);
        simpleExperiment.setExperimentOutputs(exOut);
        simpleExperiment.setEnableEmailNotification(true);
        // simpleExperiment.addToEmailAddresses("raman@ogce.org");
        Map<String, String> computeResources = airavataClient.getAvailableAppInterfaceComputeResources(new AuthzToken(""), amberAppId);
        if (computeResources != null && computeResources.size() != 0) {
            for (String id : computeResources.keySet()) {
                String resourceName = computeResources.get(id);
                if (resourceName.equals(trestlesHostName)) {
                    ComputationalResourceSchedulingModel scheduling = ExperimentModelUtil.createComputationResourceScheduling(id, 4, 1, 1, "normal", 20, 1);
                    UserConfigurationDataModel userConfigurationData = new UserConfigurationDataModel();
                    userConfigurationData.setAiravataAutoSchedule(false);
                    userConfigurationData.setOverrideManualScheduledParams(false);
                    userConfigurationData.setComputationalResourceScheduling(scheduling);
                    simpleExperiment.setUserConfigurationData(userConfigurationData);
                    return client.createExperiment(new AuthzToken(""), DEFAULT_GATEWAY, simpleExperiment);
                }
            }
        }
    } catch (AiravataSystemException e) {
        logger.error("Error occured while creating the experiment...", e.getMessage());
        throw new AiravataSystemException(e);
    } catch (InvalidRequestException e) {
        logger.error("Error occured while creating the experiment...", e.getMessage());
        throw new InvalidRequestException(e);
    } catch (AiravataClientException e) {
        logger.error("Error occured while creating the experiment...", e.getMessage());
        throw new AiravataClientException(e);
    } catch (TException e) {
        logger.error("Error occured while creating the experiment...", e.getMessage());
        throw new TException(e);
    }
    return null;
}

Example 77 with AuthzToken

use of org.apache.airavata.model.security.AuthzToken in project airavata by apache.

the class CreateLaunchExperiment method getGateway.

public static void getGateway(String gatewayId) {
    try {
        Gateway gateway = airavataClient.getGateway(new AuthzToken(""), gatewayId);
        gateway.setDomain("testDomain");
        airavataClient.updateGateway(new AuthzToken(""), gatewayId, gateway);
        List<Gateway> allGateways = airavataClient.getAllGateways(new AuthzToken(""));
        System.out.println(allGateways.size());
        if (airavataClient.isGatewayExist(new AuthzToken(""), gatewayId)) {
            Gateway gateway1 = airavataClient.getGateway(new AuthzToken(""), gatewayId);
            System.out.println(gateway1.getGatewayName());
        }
        boolean b = airavataClient.deleteGateway(new AuthzToken(""), "testGatewayId2");
        System.out.println(b);
    } catch (AiravataSystemException e) {
        e.printStackTrace();
    } catch (InvalidRequestException e) {
        e.printStackTrace();
    } catch (AiravataClientException e) {
        e.printStackTrace();
    } catch (TException e) {
        e.printStackTrace();
    }
}

Example 78 with AuthzToken

use of org.apache.airavata.model.security.AuthzToken in project airavata by apache.

the class CreateLaunchExperiment method createExperimentForLSF.

public static String createExperimentForLSF(Airavata.Client client) throws TException {
    try {
        List<InputDataObjectType> exInputs = client.getApplicationInputs(new AuthzToken(""), echoAppId);
        for (InputDataObjectType inputDataObjectType : exInputs) {
            inputDataObjectType.setValue("Hello World");
        }
        List<OutputDataObjectType> exOut = client.getApplicationOutputs(new AuthzToken(""), echoAppId);
        Project project = ProjectModelUtil.createProject("default", "lg11w", "test project");
        String projectId = client.createProject(new AuthzToken(""), DEFAULT_GATEWAY, project);
        ExperimentModel simpleExperiment = ExperimentModelUtil.createSimpleExperiment(DEFAULT_GATEWAY, projectId, "lg11w", "sshEchoExperiment", "StressMem", echoAppId, exInputs);
        simpleExperiment.setExperimentOutputs(exOut);
        simpleExperiment.setExperimentInputs(exInputs);
        Map<String, String> computeResources = airavataClient.getAvailableAppInterfaceComputeResources(new AuthzToken(""), echoAppId);
        if (computeResources != null && computeResources.size() != 0) {
            for (String id : computeResources.keySet()) {
                String resourceName = computeResources.get(id);
                if (resourceName.equals(umassrcHostName)) {
                    ComputationalResourceSchedulingModel scheduling = ExperimentModelUtil.createComputationResourceScheduling(id, 10, 1, 1, "long", 60, 1000);
                    UserConfigurationDataModel userConfigurationData = new UserConfigurationDataModel();
                    userConfigurationData.setAiravataAutoSchedule(false);
                    userConfigurationData.setOverrideManualScheduledParams(false);
                    userConfigurationData.setComputationalResourceScheduling(scheduling);
                    simpleExperiment.setUserConfigurationData(userConfigurationData);
                    simpleExperiment.setEmailAddresses(Arrays.asList(new String[] { "test@umassmed.edu" }));
                    return client.createExperiment(new AuthzToken(""), DEFAULT_GATEWAY, simpleExperiment);
                }
            }
        }
    } catch (AiravataSystemException e) {
        logger.error("Error occured while creating the experiment...", e.getMessage());
        throw new AiravataSystemException(e);
    } catch (InvalidRequestException e) {
        logger.error("Error occured while creating the experiment...", e.getMessage());
        throw new InvalidRequestException(e);
    } catch (AiravataClientException e) {
        logger.error("Error occured while creating the experiment...", e.getMessage());
        throw new AiravataClientException(e);
    } catch (TException e) {
        logger.error("Error occured while creating the experiment...", e.getMessage());
        throw new TException(e);
    }
    return null;
}

Example 79 with AuthzToken

use of org.apache.airavata.model.security.AuthzToken in project airavata by apache.

the class CreateLaunchExperiment method createExperimentForBR2Amber.

public static String createExperimentForBR2Amber(Airavata.Client client) throws TException {
    try {
        List<InputDataObjectType> exInputs = client.getApplicationInputs(new AuthzToken(""), amberAppId);
        // }
        for (InputDataObjectType inputDataObjectType : exInputs) {
            if (inputDataObjectType.getName().equalsIgnoreCase("Heat_Restart_File")) {
                inputDataObjectType.setValue("file://root@test-drive.airavata.org:/var/www/experimentData/admin101a290e6330f15a91349159553ae8b6bb1/02_Heat.rst");
            } else if (inputDataObjectType.getName().equalsIgnoreCase("Production_Control_File")) {
                inputDataObjectType.setValue("file://root@test-drive.airavata.org:/var/www/experimentData/admin101a290e6330f15a91349159553ae8b6bb1/03_Prod.in");
            } else if (inputDataObjectType.getName().equalsIgnoreCase("Parameter_Topology_File")) {
                inputDataObjectType.setValue("file://root@test-drive.airavata.org:/var/www/experimentData/admin101a290e6330f15a91349159553ae8b6bb1/prmtop");
            }
        }
        List<OutputDataObjectType> exOut = client.getApplicationOutputs(new AuthzToken(""), amberAppId);
        Project project = ProjectModelUtil.createProject("default", "admin", "test project");
        String projectId = client.createProject(new AuthzToken(""), DEFAULT_GATEWAY, project);
        ExperimentModel simpleExperiment = ExperimentModelUtil.createSimpleExperiment(DEFAULT_GATEWAY, projectId, "admin", "sshEchoExperiment", "SimpleEchoBR", amberAppId, exInputs);
        simpleExperiment.setExperimentOutputs(exOut);
        Map<String, String> computeResources = airavataClient.getAvailableAppInterfaceComputeResources(new AuthzToken(""), amberAppId);
        if (computeResources != null && computeResources.size() != 0) {
            for (String id : computeResources.keySet()) {
                String resourceName = computeResources.get(id);
                if (resourceName.equals(br2HostName)) {
                    ComputationalResourceSchedulingModel scheduling = ExperimentModelUtil.createComputationResourceScheduling(id, 4, 1, 1, "cpu", 20, 1);
                    UserConfigurationDataModel userConfigurationData = new UserConfigurationDataModel();
                    userConfigurationData.setAiravataAutoSchedule(false);
                    userConfigurationData.setOverrideManualScheduledParams(false);
                    userConfigurationData.setComputationalResourceScheduling(scheduling);
                    simpleExperiment.setUserConfigurationData(userConfigurationData);
                    return client.createExperiment(new AuthzToken(""), DEFAULT_GATEWAY, simpleExperiment);
                }
            }
        }
    } catch (AiravataSystemException e) {
        logger.error("Error occured while creating the experiment...", e.getMessage());
        throw new AiravataSystemException(e);
    } catch (InvalidRequestException e) {
        logger.error("Error occured while creating the experiment...", e.getMessage());
        throw new InvalidRequestException(e);
    } catch (AiravataClientException e) {
        logger.error("Error occured while creating the experiment...", e.getMessage());
        throw new AiravataClientException(e);
    } catch (TException e) {
        logger.error("Error occured while creating the experiment...", e.getMessage());
        throw new TException(e);
    }
    return null;
}

Example 80 with AuthzToken

use of org.apache.airavata.model.security.AuthzToken in project airavata by apache.

the class CreateLaunchExperiment method createExperimentLAMMPSForLSF.

public static String createExperimentLAMMPSForLSF(Airavata.Client client) throws TException {
    try {
        List<InputDataObjectType> exInputs = client.getApplicationInputs(new AuthzToken(""), lammpsAppId);
        for (InputDataObjectType inputDataObjectType : exInputs) {
            inputDataObjectType.setName("Friction_Simulation_Input");
            inputDataObjectType.setValue("/Users/lginnali/Downloads/data/in.friction");
            inputDataObjectType.setType(DataType.URI);
        }
        List<OutputDataObjectType> exOut = client.getApplicationOutputs(new AuthzToken(""), echoAppId);
        /*OutputDataObjectType outputDataObjectType = exOut.get(0);
            outputDataObjectType.setName("LAMMPS_Simulation_Log");
            outputDataObjectType.setType(DataType.URI);
            outputDataObjectType.setValue("");

            OutputDataObjectType output1 = exOut.get(1);
            output1.setName("LAMMPS.oJobID");
            output1.setType(DataType.URI);
            output1.setValue("");

            exOut.add(outputDataObjectType);
            exOut.add(output1);*/
        ExperimentModel simpleExperiment = ExperimentModelUtil.createSimpleExperiment(DEFAULT_GATEWAY, "default", "lg11w", "LAMMPSExperiment", "Testing", lammpsAppId, exInputs);
        simpleExperiment.setExperimentOutputs(exOut);
        Map<String, String> computeResources = airavataClient.getAvailableAppInterfaceComputeResources(new AuthzToken(""), lammpsAppId);
        if (computeResources != null && computeResources.size() != 0) {
            for (String id : computeResources.keySet()) {
                String resourceName = computeResources.get(id);
                if (resourceName.equals(umassrcHostName)) {
                    ComputationalResourceSchedulingModel scheduling = ExperimentModelUtil.createComputationResourceScheduling(id, 10, 16, 1, "long", 60, 1000);
                    UserConfigurationDataModel userConfigurationData = new UserConfigurationDataModel();
                    userConfigurationData.setAiravataAutoSchedule(false);
                    userConfigurationData.setOverrideManualScheduledParams(false);
                    userConfigurationData.setComputationalResourceScheduling(scheduling);
                    simpleExperiment.setUserConfigurationData(userConfigurationData);
                    return client.createExperiment(new AuthzToken(""), DEFAULT_GATEWAY, simpleExperiment);
                }
            }
        }
    } catch (AiravataSystemException e) {
        logger.error("Error occured while creating the experiment...", e.getMessage());
        throw new AiravataSystemException(e);
    } catch (InvalidRequestException e) {
        logger.error("Error occured while creating the experiment...", e.getMessage());
        throw new InvalidRequestException(e);
    } catch (AiravataClientException e) {
        logger.error("Error occured while creating the experiment...", e.getMessage());
        throw new AiravataClientException(e);
    } catch (TException e) {
        logger.error("Error occured while creating the experiment...", e.getMessage());
        throw new TException(e);
    }
    return null;
}