Examples with BTree org.apache.hyracks.storage.am.btree.impls.BTree used on opensource projects

Example 26 with BTree

use of org.apache.hyracks.storage.am.btree.impls.BTree in project asterixdb by apache.

the class LSMRTreeUtils method createLSMTree.

public static LSMRTree createLSMTree(IIOManager ioManager, List<IVirtualBufferCache> virtualBufferCaches, FileReference file, IBufferCache diskBufferCache, IFileMapProvider diskFileMapProvider, ITypeTraits[] typeTraits, IBinaryComparatorFactory[] rtreeCmpFactories, IBinaryComparatorFactory[] btreeCmpFactories, IPrimitiveValueProviderFactory[] valueProviderFactories, RTreePolicyType rtreePolicyType, double bloomFilterFalsePositiveRate, ILSMMergePolicy mergePolicy, ILSMOperationTracker opTracker, ILSMIOOperationScheduler ioScheduler, ILSMIOOperationCallback ioOpCallback, ILinearizeComparatorFactory linearizeCmpFactory, int[] rtreeFields, int[] buddyBTreeFields, ITypeTraits[] filterTypeTraits, IBinaryComparatorFactory[] filterCmpFactories, int[] filterFields, boolean durable, boolean isPointMBR, IMetadataPageManagerFactory freePageManagerFactory) throws HyracksDataException {
    int valueFieldCount = buddyBTreeFields.length;
    int keyFieldCount = typeTraits.length - valueFieldCount;
    ITypeTraits[] btreeTypeTraits = new ITypeTraits[valueFieldCount];
    for (int i = 0; i < valueFieldCount; i++) {
        btreeTypeTraits[i] = typeTraits[buddyBTreeFields[i]];
    }
    ITreeIndexTupleWriterFactory rtreeInteriorFrameTupleWriterFactory = new LSMTypeAwareTupleWriterFactory(typeTraits, false);
    ITreeIndexTupleWriterFactory rtreeLeafFrameTupleWriterFactory = null;
    if (isPointMBR) {
        rtreeLeafFrameTupleWriterFactory = new LSMRTreeTupleWriterFactoryForPointMBR(typeTraits, keyFieldCount, valueFieldCount, false, false);
    } else {
        rtreeLeafFrameTupleWriterFactory = rtreeInteriorFrameTupleWriterFactory;
    }
    ITreeIndexTupleWriterFactory btreeTupleWriterFactory = new LSMTypeAwareTupleWriterFactory(btreeTypeTraits, true);
    ITreeIndexFrameFactory rtreeInteriorFrameFactory = new RTreeNSMInteriorFrameFactory(rtreeInteriorFrameTupleWriterFactory, valueProviderFactories, rtreePolicyType, isPointMBR);
    ITreeIndexFrameFactory rtreeLeafFrameFactory = new RTreeNSMLeafFrameFactory(rtreeLeafFrameTupleWriterFactory, valueProviderFactories, rtreePolicyType, isPointMBR);
    ITreeIndexFrameFactory btreeInteriorFrameFactory = new BTreeNSMInteriorFrameFactory(btreeTupleWriterFactory);
    ITreeIndexFrameFactory btreeLeafFrameFactory = new BTreeNSMLeafFrameFactory(btreeTupleWriterFactory);
    TreeIndexFactory<RTree> diskRTreeFactory = new RTreeFactory(ioManager, diskBufferCache, diskFileMapProvider, freePageManagerFactory, rtreeInteriorFrameFactory, rtreeLeafFrameFactory, rtreeCmpFactories, typeTraits.length, isPointMBR);
    TreeIndexFactory<BTree> diskBTreeFactory = new BTreeFactory(ioManager, diskBufferCache, diskFileMapProvider, freePageManagerFactory, btreeInteriorFrameFactory, btreeLeafFrameFactory, btreeCmpFactories, btreeTypeTraits.length);
    int[] comparatorFields = { 0 };
    IBinaryComparatorFactory[] linearizerArray = { linearizeCmpFactory };
    int[] bloomFilterKeyFields = new int[btreeCmpFactories.length];
    for (int i = 0; i < btreeCmpFactories.length; i++) {
        bloomFilterKeyFields[i] = i;
    }
    BloomFilterFactory bloomFilterFactory = new BloomFilterFactory(diskBufferCache, diskFileMapProvider, bloomFilterKeyFields);
    ComponentFilterHelper filterHelper = null;
    LSMComponentFilterFrameFactory filterFrameFactory = null;
    LSMComponentFilterManager filterManager = null;
    if (filterCmpFactories != null) {
        TypeAwareTupleWriterFactory filterTupleWriterFactory = new TypeAwareTupleWriterFactory(filterTypeTraits);
        filterHelper = new ComponentFilterHelper(filterTupleWriterFactory, filterCmpFactories);
        filterFrameFactory = new LSMComponentFilterFrameFactory(filterTupleWriterFactory);
        filterManager = new LSMComponentFilterManager(filterFrameFactory);
    }
    ILSMIndexFileManager fileNameManager = new LSMRTreeFileManager(ioManager, diskFileMapProvider, file, diskRTreeFactory, diskBTreeFactory);
    return new LSMRTree(ioManager, virtualBufferCaches, rtreeInteriorFrameFactory, rtreeLeafFrameFactory, btreeInteriorFrameFactory, btreeLeafFrameFactory, fileNameManager, diskRTreeFactory, diskBTreeFactory, bloomFilterFactory, filterHelper, filterFrameFactory, filterManager, bloomFilterFalsePositiveRate, diskFileMapProvider, typeTraits.length, rtreeCmpFactories, btreeCmpFactories, linearizeCmpFactory, comparatorFields, linearizerArray, mergePolicy, opTracker, ioScheduler, ioOpCallback, rtreeFields, buddyBTreeFields, filterFields, durable, isPointMBR);
}

Example 27 with BTree

use of org.apache.hyracks.storage.am.btree.impls.BTree in project asterixdb by apache.

the class LSMRTreeDeletedKeysBTreeMergeCursor method open.

@Override
public void open(ICursorInitialState initialState, ISearchPredicate searchPred) throws HyracksDataException {
    LSMRTreeCursorInitialState lsmInitialState = (LSMRTreeCursorInitialState) initialState;
    cmp = lsmInitialState.getBTreeCmp();
    operationalComponents = lsmInitialState.getOperationalComponents();
    // We intentionally set the lsmHarness to null so that we don't call lsmHarness.endSearch() because we already do that when we merge r-trees.
    lsmHarness = null;
    int numBTrees = operationalComponents.size();
    rangeCursors = new IIndexCursor[numBTrees];
    RangePredicate btreePredicate = new RangePredicate(null, null, true, true, cmp, cmp);
    IIndexAccessor[] btreeAccessors = new ITreeIndexAccessor[numBTrees];
    for (int i = 0; i < numBTrees; i++) {
        ILSMComponent component = operationalComponents.get(i);
        IBTreeLeafFrame leafFrame = (IBTreeLeafFrame) lsmInitialState.getBTreeLeafFrameFactory().createFrame();
        rangeCursors[i] = new BTreeRangeSearchCursor(leafFrame, false);
        BTree btree = ((LSMRTreeDiskComponent) component).getBTree();
        btreeAccessors[i] = btree.createAccessor(NoOpOperationCallback.INSTANCE, NoOpOperationCallback.INSTANCE);
        btreeAccessors[i].search(rangeCursors[i], btreePredicate);
    }
    setPriorityQueueComparator();
    initPriorityQueue();
}

Example 28 with BTree

use of org.apache.hyracks.storage.am.btree.impls.BTree in project asterixdb by apache.

the class BTreeStatsTest method test01.

@Test
public void test01() throws Exception {
    TestStorageManagerComponentHolder.init(PAGE_SIZE, NUM_PAGES, MAX_OPEN_FILES);
    IBufferCache bufferCache = harness.getBufferCache();
    IFileMapProvider fmp = harness.getFileMapProvider();
    // declare fields
    int fieldCount = 2;
    ITypeTraits[] typeTraits = new ITypeTraits[fieldCount];
    typeTraits[0] = IntegerPointable.TYPE_TRAITS;
    typeTraits[1] = IntegerPointable.TYPE_TRAITS;
    // declare keys
    int keyFieldCount = 1;
    IBinaryComparatorFactory[] cmpFactories = new IBinaryComparatorFactory[keyFieldCount];
    cmpFactories[0] = PointableBinaryComparatorFactory.of(IntegerPointable.FACTORY);
    TypeAwareTupleWriterFactory tupleWriterFactory = new TypeAwareTupleWriterFactory(typeTraits);
    ITreeIndexFrameFactory leafFrameFactory = new BTreeNSMLeafFrameFactory(tupleWriterFactory);
    ITreeIndexFrameFactory interiorFrameFactory = new BTreeNSMInteriorFrameFactory(tupleWriterFactory);
    ITreeIndexMetadataFrameFactory metaFrameFactory = new LIFOMetaDataFrameFactory();
    IBTreeLeafFrame leafFrame = (IBTreeLeafFrame) leafFrameFactory.createFrame();
    IBTreeInteriorFrame interiorFrame = (IBTreeInteriorFrame) interiorFrameFactory.createFrame();
    ITreeIndexMetadataFrame metaFrame = metaFrameFactory.createFrame();
    IMetadataPageManager freePageManager = new LinkedMetaDataPageManager(bufferCache, metaFrameFactory);
    BTree btree = new BTree(bufferCache, fmp, freePageManager, interiorFrameFactory, leafFrameFactory, cmpFactories, fieldCount, harness.getFileReference());
    btree.create();
    btree.activate();
    Random rnd = new Random();
    rnd.setSeed(50);
    long start = System.currentTimeMillis();
    if (LOGGER.isLoggable(Level.INFO)) {
        LOGGER.info("INSERTING INTO TREE");
    }
    IFrame frame = new VSizeFrame(ctx);
    FrameTupleAppender appender = new FrameTupleAppender();
    ArrayTupleBuilder tb = new ArrayTupleBuilder(fieldCount);
    DataOutput dos = tb.getDataOutput();
    ISerializerDeserializer[] recDescSers = { IntegerSerializerDeserializer.INSTANCE, IntegerSerializerDeserializer.INSTANCE };
    RecordDescriptor recDesc = new RecordDescriptor(recDescSers);
    IFrameTupleAccessor accessor = new FrameTupleAccessor(recDesc);
    accessor.reset(frame.getBuffer());
    FrameTupleReference tuple = new FrameTupleReference();
    ITreeIndexAccessor indexAccessor = btree.createAccessor(TestOperationCallback.INSTANCE, TestOperationCallback.INSTANCE);
    // 10000
    for (int i = 0; i < 100000; i++) {
        int f0 = rnd.nextInt() % 100000;
        int f1 = 5;
        tb.reset();
        IntegerSerializerDeserializer.INSTANCE.serialize(f0, dos);
        tb.addFieldEndOffset();
        IntegerSerializerDeserializer.INSTANCE.serialize(f1, dos);
        tb.addFieldEndOffset();
        appender.reset(frame, true);
        appender.append(tb.getFieldEndOffsets(), tb.getByteArray(), 0, tb.getSize());
        tuple.reset(accessor, 0);
        if (LOGGER.isLoggable(Level.INFO)) {
            if (i % 10000 == 0) {
                long end = System.currentTimeMillis();
                LOGGER.info("INSERTING " + i + " : " + f0 + " " + f1 + " " + (end - start));
            }
        }
        try {
            indexAccessor.insert(tuple);
        } catch (HyracksDataException e) {
            if (e.getErrorCode() != ErrorCode.DUPLICATE_KEY) {
                e.printStackTrace();
                throw e;
            }
        }
    }
    int fileId = fmp.lookupFileId(harness.getFileReference());
    TreeIndexStatsGatherer statsGatherer = new TreeIndexStatsGatherer(bufferCache, freePageManager, fileId, btree.getRootPageId());
    TreeIndexStats stats = statsGatherer.gatherStats(leafFrame, interiorFrame, metaFrame);
    if (LOGGER.isLoggable(Level.INFO)) {
        LOGGER.info("\n" + stats.toString());
    }
    TreeIndexBufferCacheWarmup bufferCacheWarmup = new TreeIndexBufferCacheWarmup(bufferCache, freePageManager, fileId);
    bufferCacheWarmup.warmup(leafFrame, metaFrame, new int[] { 1, 2 }, new int[] { 2, 5 });
    btree.deactivate();
    btree.destroy();
    bufferCache.close();
}

Example 29 with BTree

use of org.apache.hyracks.storage.am.btree.impls.BTree in project asterixdb by apache.

the class BTreeUpdateSearchTest method test01.

// Update scan test on fixed-length tuples.
@Test
public void test01() throws Exception {
    IBufferCache bufferCache = harness.getBufferCache();
    // declare fields
    int fieldCount = 2;
    ITypeTraits[] typeTraits = new ITypeTraits[fieldCount];
    typeTraits[0] = IntegerPointable.TYPE_TRAITS;
    typeTraits[1] = IntegerPointable.TYPE_TRAITS;
    // declare keys
    int keyFieldCount = 1;
    IBinaryComparatorFactory[] cmpFactories = new IBinaryComparatorFactory[keyFieldCount];
    cmpFactories[0] = PointableBinaryComparatorFactory.of(IntegerPointable.FACTORY);
    @SuppressWarnings("rawtypes") ISerializerDeserializer[] recDescSers = { IntegerSerializerDeserializer.INSTANCE, IntegerSerializerDeserializer.INSTANCE };
    TypeAwareTupleWriterFactory tupleWriterFactory = new TypeAwareTupleWriterFactory(typeTraits);
    ITreeIndexFrameFactory leafFrameFactory = new BTreeNSMLeafFrameFactory(tupleWriterFactory);
    ITreeIndexFrameFactory interiorFrameFactory = new BTreeNSMInteriorFrameFactory(tupleWriterFactory);
    ITreeIndexMetadataFrameFactory metaFrameFactory = new LIFOMetaDataFrameFactory();
    IBTreeLeafFrame leafFrame = (IBTreeLeafFrame) leafFrameFactory.createFrame();
    IMetadataPageManager freePageManager = new LinkedMetaDataPageManager(bufferCache, metaFrameFactory);
    BTree btree = new BTree(bufferCache, harness.getFileMapProvider(), freePageManager, interiorFrameFactory, leafFrameFactory, cmpFactories, fieldCount, harness.getFileReference());
    btree.create();
    btree.activate();
    Random rnd = new Random();
    rnd.setSeed(50);
    long start = System.currentTimeMillis();
    if (LOGGER.isLoggable(Level.INFO)) {
        LOGGER.info("INSERTING INTO TREE");
    }
    ArrayTupleBuilder tb = new ArrayTupleBuilder(fieldCount);
    ArrayTupleReference insertTuple = new ArrayTupleReference();
    ITreeIndexAccessor indexAccessor = btree.createAccessor(TestOperationCallback.INSTANCE, TestOperationCallback.INSTANCE);
    int numInserts = 10000;
    for (int i = 0; i < numInserts; i++) {
        int f0 = rnd.nextInt() % 10000;
        int f1 = 5;
        TupleUtils.createIntegerTuple(tb, insertTuple, f0, f1);
        if (LOGGER.isLoggable(Level.INFO)) {
            if (i % 10000 == 0) {
                long end = System.currentTimeMillis();
                LOGGER.info("INSERTING " + i + " : " + f0 + " " + f1 + " " + (end - start));
            }
        }
        try {
            indexAccessor.insert(insertTuple);
        } catch (HyracksDataException hde) {
            if (hde.getErrorCode() != ErrorCode.DUPLICATE_KEY) {
                hde.printStackTrace();
                throw hde;
            }
        }
    }
    long end = System.currentTimeMillis();
    long duration = end - start;
    if (LOGGER.isLoggable(Level.INFO)) {
        LOGGER.info("DURATION: " + duration);
    }
    // Update scan.
    if (LOGGER.isLoggable(Level.INFO)) {
        LOGGER.info("UPDATE SCAN:");
    }
    // Set the cursor to X latch nodes.
    ITreeIndexCursor updateScanCursor = new BTreeRangeSearchCursor(leafFrame, true);
    RangePredicate nullPred = new RangePredicate(null, null, true, true, null, null);
    indexAccessor.search(updateScanCursor, nullPred);
    try {
        while (updateScanCursor.hasNext()) {
            updateScanCursor.next();
            ITupleReference tuple = updateScanCursor.getTuple();
            // Change the value field.
            IntegerPointable.setInteger(tuple.getFieldData(1), tuple.getFieldStart(1), 10);
        }
    } catch (Exception e) {
        e.printStackTrace();
    } finally {
        updateScanCursor.close();
    }
    // Ordered scan to verify the values.
    if (LOGGER.isLoggable(Level.INFO)) {
        LOGGER.info("ORDERED SCAN:");
    }
    // Set the cursor to X latch nodes.
    ITreeIndexCursor scanCursor = new BTreeRangeSearchCursor(leafFrame, true);
    indexAccessor.search(scanCursor, nullPred);
    try {
        while (scanCursor.hasNext()) {
            scanCursor.next();
            ITupleReference tuple = scanCursor.getTuple();
            String rec = TupleUtils.printTuple(tuple, recDescSers);
            if (LOGGER.isLoggable(Level.INFO)) {
                LOGGER.info(rec);
            }
        }
    } catch (Exception e) {
        e.printStackTrace();
    } finally {
        scanCursor.close();
    }
    btree.deactivate();
    btree.destroy();
}

Example 30 with BTree

use of org.apache.hyracks.storage.am.btree.impls.BTree in project asterixdb by apache.

the class BTreeSearchCursorTest method nonUniqueFieldPrefixIndexTest.

@Test
public void nonUniqueFieldPrefixIndexTest() throws Exception {
    if (LOGGER.isLoggable(Level.INFO)) {
        LOGGER.info("TESTING RANGE SEARCH CURSOR ON NONUNIQUE FIELD-PREFIX COMPRESSED INDEX");
    }
    IBufferCache bufferCache = harness.getBufferCache();
    // declare keys
    int keyFieldCount = 2;
    IBinaryComparatorFactory[] cmpFactories = new IBinaryComparatorFactory[keyFieldCount];
    cmpFactories[0] = PointableBinaryComparatorFactory.of(IntegerPointable.FACTORY);
    cmpFactories[1] = PointableBinaryComparatorFactory.of(IntegerPointable.FACTORY);
    ITreeIndexFrameFactory leafFrameFactory = new BTreeNSMLeafFrameFactory(tupleWriterFactory);
    ITreeIndexFrameFactory interiorFrameFactory = new BTreeNSMInteriorFrameFactory(tupleWriterFactory);
    IBTreeLeafFrame leafFrame = (IBTreeLeafFrame) leafFrameFactory.createFrame();
    IBTreeInteriorFrame interiorFrame = (IBTreeInteriorFrame) interiorFrameFactory.createFrame();
    IMetadataPageManager freePageManager = new LinkedMetaDataPageManager(bufferCache, metaFrameFactory);
    BTree btree = new BTree(bufferCache, harness.getFileMapProvider(), freePageManager, interiorFrameFactory, leafFrameFactory, cmpFactories, fieldCount, harness.getFileReference());
    btree.create();
    btree.activate();
    ArrayTupleBuilder tupleBuilder = new ArrayTupleBuilder(fieldCount);
    ArrayTupleReference tuple = new ArrayTupleReference();
    ITreeIndexAccessor indexAccessor = btree.createAccessor(TestOperationCallback.INSTANCE, TestOperationCallback.INSTANCE);
    // generate keys
    int numKeys = 50;
    int maxKey = 10;
    ArrayList<Integer> keys = new ArrayList<>();
    for (int i = 0; i < numKeys; i++) {
        int k = rnd.nextInt() % maxKey;
        keys.add(k);
    }
    Collections.sort(keys);
    // insert keys into btree
    for (int i = 0; i < keys.size(); i++) {
        TupleUtils.createIntegerTuple(tupleBuilder, tuple, keys.get(i), i);
        tuple.reset(tupleBuilder.getFieldEndOffsets(), tupleBuilder.getByteArray());
        try {
            indexAccessor.insert(tuple);
        } catch (Exception e) {
            e.printStackTrace();
        }
    }
    int minSearchKey = -100;
    int maxSearchKey = 100;
    // forward searches
    Assert.assertTrue(performSearches(keys, btree, leafFrame, interiorFrame, minSearchKey, maxSearchKey, true, true, false));
    Assert.assertTrue(performSearches(keys, btree, leafFrame, interiorFrame, minSearchKey, maxSearchKey, false, true, false));
    Assert.assertTrue(performSearches(keys, btree, leafFrame, interiorFrame, minSearchKey, maxSearchKey, true, false, false));
    Assert.assertTrue(performSearches(keys, btree, leafFrame, interiorFrame, minSearchKey, maxSearchKey, true, true, false));
    btree.deactivate();
    btree.destroy();
}