Examples with DataSetProperty org.broadinstitute.consent.http.models.DataSetProperty used on opensource projects

Example 1 with DataSetProperty

use of org.broadinstitute.consent.http.models.DataSetProperty in project consent by DataBiosphere.

the class DatasetService method getDatasetWithPropertiesById.

public DataSet getDatasetWithPropertiesById(Integer datasetId) {
    DataSet dataset = datasetDAO.findDataSetById(datasetId);
    Set<DataSetProperty> properties = getDatasetProperties(datasetId);
    dataset.setProperties(properties);
    return dataset;
}

Example 2 with DataSetProperty

use of org.broadinstitute.consent.http.models.DataSetProperty in project consent by DataBiosphere.

the class DatasetService method processDatasetProperties.

public List<DataSetProperty> processDatasetProperties(Integer datasetId, List<DataSetPropertyDTO> properties) {
    Date now = new Date();
    List<Dictionary> dictionaries = datasetDAO.getMappedFieldsOrderByReceiveOrder();
    List<String> keys = dictionaries.stream().map(Dictionary::getKey).collect(Collectors.toList());
    return properties.stream().filter(p -> keys.contains(p.getPropertyName()) && !p.getPropertyName().equals(DATASET_NAME_KEY)).map(p -> new DataSetProperty(datasetId, dictionaries.get(keys.indexOf(p.getPropertyName())).getKeyId(), p.getPropertyValue(), now)).collect(Collectors.toList());
}

Example 3 with DataSetProperty

use of org.broadinstitute.consent.http.models.DataSetProperty in project consent by DataBiosphere.

the class DatasetService method createDatasetWithConsent.

public DatasetDTO createDatasetWithConsent(DatasetDTO dataset, String name, Integer userId) throws Exception {
    if (Objects.nonNull(getDatasetByName(name))) {
        throw new IllegalArgumentException("Dataset name: " + name + " is already in use");
    }
    Timestamp now = new Timestamp(new Date().getTime());
    Integer createdDatasetId = datasetDAO.inTransaction(h -> {
        try {
            Integer id = h.insertDatasetV2(name, now, userId, dataset.getObjectId(), dataset.getActive());
            List<DataSetProperty> propertyList = processDatasetProperties(id, dataset.getProperties());
            h.insertDatasetProperties(propertyList);
            h.updateDatasetNeedsApproval(id, dataset.getNeedsApproval());
            return id;
        } catch (Exception e) {
            if (Objects.nonNull(h)) {
                h.rollback();
            }
            logger.error("Exception creating dataset with consent: " + e.getMessage());
            throw e;
        }
    });
    dataset.setDataSetId(createdDatasetId);
    try {
        createConsentForDataset(dataset);
    } catch (Exception e) {
        logger.error("Exception creating consent for dataset: " + e.getMessage());
        deleteDataset(createdDatasetId, userId);
        throw e;
    }
    return getDatasetDTO(createdDatasetId);
}

Example 4 with DataSetProperty

use of org.broadinstitute.consent.http.models.DataSetProperty in project consent by DataBiosphere.

the class DatasetDAOTest method testDeleteDatasetPropertyByKey.

@Test
public void testDeleteDatasetPropertyByKey() {
    DataSet d = createDataset();
    Set<DataSetProperty> properties = dataSetDAO.findDatasetPropertiesByDatasetId(d.getDataSetId());
    DataSetProperty propertyToDelete = properties.stream().collect(Collectors.toList()).get(0);
    dataSetDAO.deleteDatasetPropertyByKey(d.getDataSetId(), propertyToDelete.getPropertyKey());
    Set<DataSetProperty> returnedProperties = dataSetDAO.findDatasetPropertiesByDatasetId(d.getDataSetId());
    assertNotEquals(properties.size(), returnedProperties.size());
}

Example 5 with DataSetProperty

use of org.broadinstitute.consent.http.models.DataSetProperty in project consent by DataBiosphere.

the class DatasetDAOTest method testFindDatasetPropertiesByDatasetId.

@Test
public void testFindDatasetPropertiesByDatasetId() {
    DataSet d = createDataset();
    Set<DataSetProperty> properties = dataSetDAO.findDatasetPropertiesByDatasetId(d.getDataSetId());
    assertEquals(properties.size(), 1);
}