Examples with CyApplicationManager org.cytoscape.application.CyApplicationManager used on opensource projects

Example 6 with CyApplicationManager

use of org.cytoscape.application.CyApplicationManager in project cytoscape-impl by cytoscape.

the class CyNetworkViewWriterTest method setUp.

@Before
public void setUp() throws Exception {
    writerManager = mock(CyNetworkViewWriterManager.class);
    cyApplicationManager = mock(CyApplicationManager.class);
    view = viewSupport.getNetworkView();
    final List<CyFileFilter> filters = new ArrayList<CyFileFilter>();
    final CyFileFilter dummyFilter = mock(CyFileFilter.class);
    filters.add(dummyFilter);
    when(dummyFilter.getDescription()).thenReturn("dummy description");
    when(dummyFilter.getExtensions()).thenReturn(Collections.singleton("dummy"));
    when(writerManager.getAvailableWriterFilters()).thenReturn(filters);
    final CyNetworkViewWriter writer = new CyNetworkViewWriter(writerManager, cyApplicationManager, view);
    this.cyWriter = writer;
    when(writerManager.getWriter(eq(view), eq(dummyFilter), any(File.class))).thenReturn(writer, writer);
}

Example 7 with CyApplicationManager

use of org.cytoscape.application.CyApplicationManager in project cytoscape-impl by cytoscape.

the class ViewWriterTest method setUp.

@Before
@SuppressWarnings("rawtypes")
public void setUp() throws Exception {
    final PresentationWriterManager viewWriterMgr = mock(PresentationWriterManager.class);
    final CyApplicationManager applicationManager = mock(CyApplicationManager.class);
    final RenderingEngineManager engineManager = mock(RenderingEngineManager.class);
    final CyNetworkView view = mock(CyNetworkView.class);
    final CyNetwork network = mock(CyNetwork.class);
    final CyRow row = mock(CyRow.class);
    final RenderingEngine re = mock(RenderingEngine.class);
    final CyServiceRegistrar serviceRegistrar = mock(CyServiceRegistrar.class);
    when(serviceRegistrar.getService(CyApplicationManager.class)).thenReturn(applicationManager);
    when(serviceRegistrar.getService(RenderingEngineManager.class)).thenReturn(engineManager);
    when(serviceRegistrar.getService(PresentationWriterManager.class)).thenReturn(viewWriterMgr);
    fileFilter = mock(CyFileFilter.class);
    when(fileFilter.getDescription()).thenReturn("A dummy filter");
    when(fileFilter.getExtensions()).thenReturn(Collections.singleton("dummy"));
    final List<CyFileFilter> filters = new ArrayList<>();
    filters.add(fileFilter);
    when(viewWriterMgr.getAvailableWriterFilters()).thenReturn(filters);
    when(view.getModel()).thenReturn(network);
    when(network.getRow(network)).thenReturn(row);
    cyWriter = new ViewWriter(view, re, serviceRegistrar);
    final CyWriter aWriter = mock(CyWriter.class);
    when(viewWriterMgr.getWriter(eq(view), eq(re), eq(fileFilter), argThat(new AnyOutputStreamMatcher()))).thenReturn(aWriter);
}

Example 8 with CyApplicationManager

use of org.cytoscape.application.CyApplicationManager in project cytoscape-impl by cytoscape.

the class ExportVizmapTaskFactoryImpl method createTaskIterator.

@Override
public TaskIterator createTaskIterator() {
    final VizmapWriterManager writerManager = serviceRegistrar.getService(VizmapWriterManager.class);
    final CyApplicationManager cyApplicationManager = serviceRegistrar.getService(CyApplicationManager.class);
    return new TaskIterator(2, new VizmapWriter(writerManager, cyApplicationManager, serviceRegistrar));
}

Example 9 with CyApplicationManager

use of org.cytoscape.application.CyApplicationManager in project cytoscape-impl by cytoscape.

the class CySessionManagerImpl method restoreNetworkSelection.

private void restoreNetworkSelection(final CySession sess, final List<CyNetwork> selectedNets) {
    // If the current view/network was not set, set the first selected network as current
    if (!selectedNets.isEmpty()) {
        final CyNetwork cn = selectedNets.get(0);
        final CyApplicationManager appMgr = serviceRegistrar.getService(CyApplicationManager.class);
        appMgr.setCurrentNetwork(cn);
        // Also set the current view, if there is one
        final CyNetworkViewManager nvMgr = serviceRegistrar.getService(CyNetworkViewManager.class);
        final Collection<CyNetworkView> cnViews = nvMgr.getNetworkViews(cn);
        final CyNetworkView cv = cnViews.isEmpty() ? null : cnViews.iterator().next();
        appMgr.setCurrentNetworkView(cv);
        // The selected networks must be set after setting the current one!
        appMgr.setSelectedNetworks(selectedNets);
    }
}

Example 10 with CyApplicationManager

use of org.cytoscape.application.CyApplicationManager in project cytoscape-impl by cytoscape.

the class CySessionManagerImpl method restoreCurrentVisualStyle.

private void restoreCurrentVisualStyle() {
    // Make sure the current visual style is the one applied to the current network view
    final CyEventHelper eventHelper = serviceRegistrar.getService(CyEventHelper.class);
    eventHelper.flushPayloadEvents();
    final CyApplicationManager appMgr = serviceRegistrar.getService(CyApplicationManager.class);
    final CyNetworkView cv = appMgr.getCurrentNetworkView();
    if (cv != null) {
        final VisualMappingManager vmMgr = serviceRegistrar.getService(VisualMappingManager.class);
        final VisualStyle style = vmMgr.getVisualStyle(cv);
        if (style != null && !style.equals(vmMgr.getCurrentVisualStyle()))
            vmMgr.setCurrentVisualStyle(style);
    }
}