Examples with CyApplicationManager org.cytoscape.application.CyApplicationManager used on opensource projects

Example 31 with CyApplicationManager

use of org.cytoscape.application.CyApplicationManager in project cytoscape-impl by cytoscape.

the class VisualMappingManagerImpl method getAllVisualLexicon.

@Override
public Set<VisualLexicon> getAllVisualLexicon() {
    final Set<VisualLexicon> set = new LinkedHashSet<>();
    final CyApplicationManager appManager = serviceRegistrar.getService(CyApplicationManager.class);
    for (final NetworkViewRenderer nvRenderer : appManager.getNetworkViewRendererSet()) {
        final VisualLexicon lexicon = nvRenderer.getRenderingEngineFactory(NetworkViewRenderer.DEFAULT_CONTEXT).getVisualLexicon();
        if (lexicon != null)
            set.add(lexicon);
    }
    return set;
}

Example 32 with CyApplicationManager

use of org.cytoscape.application.CyApplicationManager in project cytoscape-impl by cytoscape.

the class VisualMappingManagerImpl method setVisualStyle.

@Override
public void setVisualStyle(final VisualStyle vs, final CyNetworkView nv) {
    if (nv == null)
        throw new NullPointerException("Network view is null.");
    boolean changed = false;
    synchronized (lock) {
        if (vs == null) {
            changed = network2VisualStyleMap.remove(nv) != null;
        } else {
            final VisualStyle previousStyle = network2VisualStyleMap.put(nv, vs);
            changed = !vs.equals(previousStyle);
        }
        if (this.visualStyles.contains(vs) == false)
            this.visualStyles.add(vs);
    }
    if (changed) {
        final CyEventHelper eventHelper = serviceRegistrar.getService(CyEventHelper.class);
        eventHelper.fireEvent(new VisualStyleSetEvent(this, vs, nv));
        final CyApplicationManager appManager = serviceRegistrar.getService(CyApplicationManager.class);
        if (appManager != null && nv.equals(appManager.getCurrentNetworkView()))
            setCurrentVisualStyle(vs);
    }
}

Example 33 with CyApplicationManager

use of org.cytoscape.application.CyApplicationManager in project cytoscape-impl by cytoscape.

the class ApplyToNetworkHandler method apply.

@Override
public void apply(final CyRow row, final View<CyNetwork> view) {
    final CyNetworkView netView = (CyNetworkView) view;
    final Collection<View<CyNode>> nodeViews = netView.getNodeViews();
    final Collection<View<CyEdge>> edgeViews = netView.getEdgeViews();
    final Collection<View<CyNetwork>> networkViewSet = new HashSet<View<CyNetwork>>();
    networkViewSet.add(netView);
    // Make sure the dependency maps are up to date
    updateDependencyMaps();
    // Clear visual properties from all views first
    view.clearVisualProperties();
    for (final View<?> v : nodeViews) v.clearVisualProperties();
    for (final View<?> v : edgeViews) v.clearVisualProperties();
    // Get current Visual Lexicon
    final CyApplicationManager appMgr = serviceRegistrar.getService(CyApplicationManager.class);
    final VisualLexicon lexicon = appMgr.getCurrentNetworkViewRenderer().getRenderingEngineFactory(NetworkViewRenderer.DEFAULT_CONTEXT).getVisualLexicon();
    applyDefaultsInParallel(netView, lexicon.getVisualLexiconNode(BasicVisualLexicon.NODE));
    applyDefaultsInParallel(netView, lexicon.getVisualLexiconNode(BasicVisualLexicon.EDGE));
    applyDefaultsInParallel(netView, lexicon.getVisualLexiconNode(BasicVisualLexicon.NETWORK));
    applyDependencies(netView);
    final ExecutorService exe = Executors.newCachedThreadPool();
    exe.submit(new ApplyMappingsTask(netView, nodeViews, BasicVisualLexicon.NODE, lexicon));
    exe.submit(new ApplyMappingsTask(netView, edgeViews, BasicVisualLexicon.EDGE, lexicon));
    exe.submit(new ApplyMappingsTask(netView, networkViewSet, BasicVisualLexicon.NETWORK, lexicon));
    try {
        exe.shutdown();
        exe.awaitTermination(15, TimeUnit.MINUTES);
    } catch (Exception ex) {
        logger.warn("Create apply operation failed.", ex);
    }
}

Example 34 with CyApplicationManager

use of org.cytoscape.application.CyApplicationManager in project cytoscape-impl by cytoscape.

the class VisualStyleFactoryImpl method copyDependencies.

@SuppressWarnings({ "rawtypes", "unchecked" })
private void copyDependencies(final VisualStyle original, final VisualStyle copy) {
    final Set<VisualPropertyDependency<?>> allDep1 = original.getAllVisualPropertyDependencies();
    final CyApplicationManager appMgr = serviceRegistrar.getService(CyApplicationManager.class);
    final VisualLexicon lexicon = appMgr.getCurrentNetworkViewRenderer().getRenderingEngineFactory(NetworkViewRenderer.DEFAULT_CONTEXT).getVisualLexicon();
    final Set<VisualPropertyDependency<?>> allDep2 = copy.getAllVisualPropertyDependencies();
    final Map<String, VisualPropertyDependency<?>> depMap = new HashMap<>();
    for (VisualPropertyDependency<?> dep : allDep2) depMap.put(dep.getIdString(), dep);
    for (VisualPropertyDependency<?> dep1 : allDep1) {
        try {
            VisualPropertyDependency<?> dep2 = depMap.get(dep1.getIdString());
            if (dep2 == null) {
                // Just in case the new Style does not have this dependency...
                dep2 = new VisualPropertyDependency(dep1.getIdString(), dep1.getDisplayName(), dep1.getVisualProperties(), lexicon);
                dep2.setDependency(dep1.isDependencyEnabled());
                copy.addVisualPropertyDependency(dep2);
            } else {
                // The new Style probably has the same dependency already;
                // in this case, just update the enabled state.
                dep2.setDependency(dep1.isDependencyEnabled());
            }
        } catch (Exception e) {
            logger.warn("Cannot copy VisualPropertyDependency " + dep1.getIdString(), e);
        }
    }
}

Example 35 with CyApplicationManager

use of org.cytoscape.application.CyApplicationManager in project cytoscape-impl by cytoscape.

the class DiscreteValueEditor method getSupportedValues.

@SuppressWarnings("unchecked")
private <S extends T> Set<T> getSupportedValues(final VisualProperty<S> vp) {
    if (vp == null)
        return values;
    final CyApplicationManager appMgr = servicesUtil.get(CyApplicationManager.class);
    final VisualLexicon lexicon = appMgr.getCurrentNetworkViewRenderer().getRenderingEngineFactory(NetworkViewRenderer.DEFAULT_CONTEXT).getVisualLexicon();
    return (Set<T>) lexicon.getSupportedValueRange(vp);
}