Examples with CyApplicationManager org.cytoscape.application.CyApplicationManager used on opensource projects

Example 41 with CyApplicationManager

use of org.cytoscape.application.CyApplicationManager in project cytoscape-impl by cytoscape.

the class BirdsEyeViewPanel method update.

public final void update() {
    final Dimension currentPanelSize = getSize();
    getPresentationPanel().setSize(currentPanelSize);
    getPresentationPanel().setPreferredSize(currentPanelSize);
    if (engine == null) {
        final CyApplicationManager applicationManager = serviceRegistrar.getService(CyApplicationManager.class);
        final NetworkViewRenderer renderer = applicationManager.getNetworkViewRenderer(networkView.getRendererId());
        final RenderingEngineFactory<CyNetwork> bevFactory = renderer.getRenderingEngineFactory(NetworkViewRenderer.BIRDS_EYE_CONTEXT);
        engine = bevFactory.createRenderingEngine(getPresentationPanel(), networkView);
    }
    repaint();
}

Example 42 with CyApplicationManager

use of org.cytoscape.application.CyApplicationManager in project cytoscape-impl by cytoscape.

the class GradientEditorPanel method updateView.

void updateView() {
    final CyApplicationManager appMgr = servicesUtil.get(CyApplicationManager.class);
    style.apply(appMgr.getCurrentNetworkView());
    appMgr.getCurrentNetworkView().updateView();
    getSlider().repaint();
}

Example 43 with CyApplicationManager

use of org.cytoscape.application.CyApplicationManager in project cytoscape-impl by cytoscape.

the class GradientEditorPanel method deleteButtonActionPerformed.

@Override
protected void deleteButtonActionPerformed(final ActionEvent evt) {
    final int selectedIndex = getSlider().getSelectedIndex();
    if (0 <= selectedIndex) {
        getSlider().getModel().removeThumb(selectedIndex);
        mapping.removePoint(selectedIndex);
        updateMap();
        final CyApplicationManager appMgr = servicesUtil.get(CyApplicationManager.class);
        appMgr.getCurrentNetworkView().updateView();
        repaint();
    }
}

Example 44 with CyApplicationManager

use of org.cytoscape.application.CyApplicationManager in project cytoscape-impl by cytoscape.

the class C2DEditor method setValue.

@Override
@SuppressWarnings({ "unchecked", "rawtypes" })
public void setValue(final Object value) {
    if (value instanceof ContinuousMapping == false)
        throw new IllegalArgumentException("Value should be ContinuousMapping: this is " + value);
    final CyApplicationManager appMgr = servicesUtil.get(CyApplicationManager.class);
    final CyNetwork currentNetwork = appMgr.getCurrentNetwork();
    if (currentNetwork == null)
        return;
    ContinuousMapping<?, ?> mTest = (ContinuousMapping<?, ?>) value;
    // TODO: error chekcing
    mapping = (ContinuousMapping<Number, V>) value;
    Class<? extends CyIdentifiable> type = (Class<? extends CyIdentifiable>) mapping.getVisualProperty().getTargetDataType();
    final CyNetworkTableManager netTblMgr = servicesUtil.get(CyNetworkTableManager.class);
    final CyTable attr = netTblMgr.getTable(appMgr.getCurrentNetwork(), type, CyNetwork.DEFAULT_ATTRS);
    final VisualMappingManager vmMgr = servicesUtil.get(VisualMappingManager.class);
    editorPanel = new C2DMappingEditorPanel(vmMgr.getCurrentVisualStyle(), mapping, attr, editorManager, servicesUtil);
}

Example 45 with CyApplicationManager

use of org.cytoscape.application.CyApplicationManager in project cytoscape-impl by cytoscape.

the class LegendDialog method createMappingLegends.

@SuppressWarnings("rawtypes")
private void createMappingLegends(final Collection<VisualMappingFunction<?, ?>> mappings, final JPanel legend) {
    for (VisualMappingFunction<?, ?> map : mappings) {
        final CyApplicationManager appMgr = servicesUtil.get(CyApplicationManager.class);
        final JPanel mappingLegend;
        if (map instanceof ContinuousMapping) {
            mappingLegend = new ContinuousLegendPanel(visualStyle, (ContinuousMapping) map, appMgr.getCurrentNetwork().getDefaultNodeTable(), servicesUtil);
        } else if (map instanceof DiscreteMapping) {
            mappingLegend = new DiscreteLegendPanel((DiscreteMapping<?, ?>) map, servicesUtil);
        } else if (map instanceof DiscreteMapping) {
            mappingLegend = new PassthroughLegendPanel((PassthroughMapping<?, ?>) map, servicesUtil);
        } else {
            continue;
        }
        // display anything besides the title.
        if (map instanceof PassthroughMapping)
            legend.add(mappingLegend, 0);
        else
            legend.add(mappingLegend);
        // Set padding
        mappingLegend.setBorder(new EmptyBorder(15, 30, 15, 30));
    }
}