Examples with ReadUtils org.cytoscape.io.internal.util.ReadUtils used on opensource projects

Example 1 with ReadUtils

use of org.cytoscape.io.internal.util.ReadUtils in project cytoscape-impl by cytoscape.

the class AbstractNetworkReaderTest method setUp.

@Before
public void setUp() throws Exception {
    taskMonitor = mock(TaskMonitor.class);
    CyLayoutAlgorithm def = mock(CyLayoutAlgorithm.class);
    Object context = new Object();
    when(def.createLayoutContext()).thenReturn(context);
    when(def.getDefaultLayoutContext()).thenReturn(context);
    when(def.createTaskIterator(Mockito.any(CyNetworkView.class), Mockito.any(Object.class), Mockito.anySet(), Mockito.any(String.class))).thenReturn(new TaskIterator(new SimpleTask()));
    layouts = mock(CyLayoutAlgorithmManager.class);
    when(layouts.getDefaultLayout()).thenReturn(def);
    NetworkTestSupport nts = new NetworkTestSupport();
    netFactory = nts.getNetworkFactory();
    netManager = nts.getNetworkManager();
    rootNetManager = nts.getRootNetworkFactory();
    netTableManager = nts.getNetworkTableManager();
    TableTestSupport tblTestSupport = new TableTestSupport();
    tableFactory = tblTestSupport.getTableFactory();
    tableManager = mock(CyTableManager.class);
    GroupTestSupport groupTestSupport = new GroupTestSupport();
    groupManager = groupTestSupport.getGroupManager();
    groupFactory = groupTestSupport.getGroupFactory();
    properties = new Properties();
    CyProperty<Properties> cyProperties = new SimpleCyProperty<>("Test", properties, Properties.class, SavePolicy.DO_NOT_SAVE);
    NetworkViewTestSupport nvts = new NetworkViewTestSupport();
    setViewThreshold(DEF_THRESHOLD);
    viewFactory = nvts.getNetworkViewFactory();
    readUtil = new ReadUtils(new StreamUtilImpl(serviceRegistrar));
    defRenderer = mock(NetworkViewRenderer.class);
    when(defRenderer.getNetworkViewFactory()).thenReturn(viewFactory);
    lexicon = new BasicVisualLexicon(new NullVisualProperty("MINIMAL_ROOT", "Minimal Root Visual Property"));
    renderingEngineManager = mock(RenderingEngineManager.class);
    when(renderingEngineManager.getDefaultVisualLexicon()).thenReturn(lexicon);
    applicationManager = mock(CyApplicationManager.class);
    when(applicationManager.getDefaultNetworkViewRenderer()).thenReturn(defRenderer);
    serviceRegistrar = mock(CyServiceRegistrar.class);
    when(serviceRegistrar.getService(CyProperty.class, "(cyPropertyName=cytoscape3.props)")).thenReturn(cyProperties);
    when(serviceRegistrar.getService(CyApplicationManager.class)).thenReturn(applicationManager);
    when(serviceRegistrar.getService(CyNetworkFactory.class)).thenReturn(netFactory);
    when(serviceRegistrar.getService(CyNetworkViewFactory.class)).thenReturn(viewFactory);
    when(serviceRegistrar.getService(CyNetworkManager.class)).thenReturn(netManager);
    when(serviceRegistrar.getService(CyNetworkTableManager.class)).thenReturn(netTableManager);
    when(serviceRegistrar.getService(CyRootNetworkManager.class)).thenReturn(rootNetManager);
    when(serviceRegistrar.getService(CyLayoutAlgorithmManager.class)).thenReturn(layouts);
    when(serviceRegistrar.getService(CyTableManager.class)).thenReturn(tableManager);
    when(serviceRegistrar.getService(CyTableFactory.class)).thenReturn(tableFactory);
    when(serviceRegistrar.getService(CyGroupManager.class)).thenReturn(groupManager);
    when(serviceRegistrar.getService(CyGroupFactory.class)).thenReturn(groupFactory);
    when(serviceRegistrar.getService(RenderingEngineManager.class)).thenReturn(renderingEngineManager);
}