Examples with SimpleCyProperty org.cytoscape.property.SimpleCyProperty used on opensource projects

Example 1 with SimpleCyProperty

use of org.cytoscape.property.SimpleCyProperty in project cytoscape-impl by cytoscape.

the class DownloadSitesManagerTest method testSaveLoad.

@Test
public void testSaveLoad() {
    // Create new DownloadSitesManager
    Properties properties = new Properties();
    CyProperty<Properties> cyProperty = new SimpleCyProperty<Properties>("TestProperties", properties, properties.getClass(), DO_NOT_SAVE);
    DownloadSitesManager downloadSitesManager = new DownloadSitesManager(cyProperty);
    // Check initially empty, and loading empty list
    assertEquals(0, downloadSitesManager.getDownloadSites().size());
    downloadSitesManager.loadDownloadSites();
    assertEquals(0, downloadSitesManager.getDownloadSites().size());
    // Insert 1, save, check result
    DownloadSite downloadSite = new DownloadSite();
    downloadSite.setSiteName("test1");
    downloadSite.setSiteUrl("http://test1");
    downloadSitesManager.getDownloadSites().add(downloadSite);
    downloadSitesManager.saveDownloadSites();
    assertEquals(1, downloadSitesManager.getDownloadSites().size());
    assertEquals("1", properties.getProperty(DownloadSitesManager.DOWNLOAD_SITES_COUNT_KEY));
    assertEquals("test1", properties.getProperty(DownloadSitesManager.DOWNLOAD_SITE_NAME_KEY_PREFIX + "1"));
    assertEquals("http://test1", properties.getProperty(DownloadSitesManager.DOWNLOAD_SITE_URL_KEY_PREFIX + "1"));
    assertNull(properties.getProperty(DownloadSitesManager.DOWNLOAD_SITE_NAME_KEY_PREFIX + "2"));
    assertNull(properties.getProperty(DownloadSitesManager.DOWNLOAD_SITE_URL_KEY_PREFIX + "2"));
    // Insert another, save, check
    downloadSite = new DownloadSite();
    downloadSite.setSiteName("test2");
    downloadSite.setSiteUrl("http://test2");
    downloadSitesManager.getDownloadSites().add(downloadSite);
    downloadSitesManager.saveDownloadSites();
    assertEquals(2, downloadSitesManager.getDownloadSites().size());
    assertEquals("2", properties.getProperty(DownloadSitesManager.DOWNLOAD_SITES_COUNT_KEY));
    // Old saved value should still be there
    assertEquals("test1", properties.getProperty(DownloadSitesManager.DOWNLOAD_SITE_NAME_KEY_PREFIX + "1"));
    assertEquals("http://test1", properties.getProperty(DownloadSitesManager.DOWNLOAD_SITE_URL_KEY_PREFIX + "1"));
    // Values should be in order of insertion
    assertEquals("test2", properties.getProperty(DownloadSitesManager.DOWNLOAD_SITE_NAME_KEY_PREFIX + "2"));
    assertEquals("http://test2", properties.getProperty(DownloadSitesManager.DOWNLOAD_SITE_URL_KEY_PREFIX + "2"));
    assertNull(properties.getProperty(DownloadSitesManager.DOWNLOAD_SITE_NAME_KEY_PREFIX + "3"));
    assertNull(properties.getProperty(DownloadSitesManager.DOWNLOAD_SITE_URL_KEY_PREFIX + "3"));
    // Test load
    // Clear sites
    downloadSitesManager.getDownloadSites().clear();
    assertEquals(0, downloadSitesManager.getDownloadSites().size());
    assertTrue(downloadSitesManager.loadDownloadSites());
    assertEquals(2, downloadSitesManager.getDownloadSites().size());
    assertEquals("test1", downloadSitesManager.getDownloadSites().get(0).getSiteName());
    assertEquals("http://test1", downloadSitesManager.getDownloadSites().get(0).getSiteUrl());
    assertEquals("test2", downloadSitesManager.getDownloadSites().get(1).getSiteName());
    assertEquals("http://test2", downloadSitesManager.getDownloadSites().get(1).getSiteUrl());
}

Example 2 with SimpleCyProperty

use of org.cytoscape.property.SimpleCyProperty in project cytoscape-impl by cytoscape.

the class Cy2SessionReaderImpl method extractProperties.

private void extractProperties(InputStream is, String entryName) throws Exception {
    CyPropertyReader reader = propertyReaderMgr.getReader(is, entryName);
    if (reader == null)
        return;
    reader.run(taskMonitor);
    final Properties props = (Properties) reader.getProperty();
    final Properties newProps = new Properties();
    if (props != null) {
        // Only add properties that should have the SESSION_FILE save policy
        for (String key : props.stringPropertyNames()) {
            if (isSessionProperty(key)) {
                String value = props.getProperty(key);
                newProps.put(key, value);
            }
        }
        final CyProperty<Properties> cyProps = new SimpleCyProperty<Properties>("session", newProps, Properties.class, CyProperty.SavePolicy.SESSION_FILE);
        properties.add(cyProps);
    }
}

Example 3 with SimpleCyProperty

use of org.cytoscape.property.SimpleCyProperty in project cytoscape-impl by cytoscape.

the class Cy2SessionReaderImpl method extractBookmarks.

private void extractBookmarks(InputStream is, String entryName) throws Exception {
    CyPropertyReader reader = propertyReaderMgr.getReader(is, entryName);
    reader.run(taskMonitor);
    final Bookmarks bookmarks = (Bookmarks) reader.getProperty();
    final CyProperty<Bookmarks> cyProps = new SimpleCyProperty<Bookmarks>("bookmarks", bookmarks, Bookmarks.class, CyProperty.SavePolicy.SESSION_FILE);
    properties.add(cyProps);
}

Example 4 with SimpleCyProperty

use of org.cytoscape.property.SimpleCyProperty in project cytoscape-impl by cytoscape.

the class Cy3SessionReaderImpl method extractProperties.

private void extractProperties(InputStream is, String entryName) throws Exception {
    CyPropertyReader reader = propertyReaderMgr.getReader(is, entryName);
    if (reader == null)
        return;
    reader.run(taskMonitor);
    CyProperty<?> cyProps = null;
    Object obj = reader.getProperty();
    if (obj instanceof Properties) {
        Properties props = (Properties) obj;
        Matcher matcher = PROPERTIES_PATTERN.matcher(entryName);
        if (matcher.matches()) {
            String propsName = matcher.group(2);
            if (propsName != null) {
                cyProps = new SimpleCyProperty<>(propsName, props, Properties.class, CyProperty.SavePolicy.SESSION_FILE);
            }
        }
    } else if (obj instanceof Bookmarks) {
        cyProps = new SimpleCyProperty<>("bookmarks", (Bookmarks) obj, Bookmarks.class, CyProperty.SavePolicy.SESSION_FILE);
    } else {
        // TODO: get name and create the CyProperty for unknown types
        logger.error("Cannot extract CyProperty name from: " + entryName);
    }
    if (cyProps != null)
        properties.add(cyProps);
}

Example 5 with SimpleCyProperty

use of org.cytoscape.property.SimpleCyProperty in project cytoscape-impl by cytoscape.

the class StartupConfig method start.

public void start() {
    // set the properties
    // no need to do this in a task since it's so fast
    // globalProps.putAll(localProps);
    CyProperty<Properties> commandline = new SimpleCyProperty<Properties>("commandline", localProps, Properties.class, CyProperty.SavePolicy.DO_NOT_SAVE);
    Properties cmdlnProps = new Properties();
    cmdlnProps.setProperty("cyPropertyName", "commandline.props");
    registrar.registerService(commandline, CyProperty.class, cmdlnProps);
    // on the command line.
    if (!taskStart)
        return;
    // Since we've set command line args we presumably
    // don't want to see the welcome screen, so we
    // disable it here.
    globalProps.setProperty("tempHideWelcomeScreen", "true");
    ArrayList<TaskIterator> taskIteratorList = new ArrayList<TaskIterator>();
    if (sessionName != null) {
        taskIteratorList.add(loadSession.createTaskIterator(sessionName));
    } else {
        for (File network : networkFiles) taskIteratorList.add(networkFileLoader.createTaskIterator(network));
        for (URL network : networkURLs) taskIteratorList.add(networkURLLoader.loadCyNetworks(network));
        for (File vizmap : vizmapFiles) taskIteratorList.add(visualStylesLoader.createTaskIterator(vizmap));
    }
    Task initTask = new DummyTask();
    TaskIterator taskIterator = new TaskIterator(taskIteratorList.size(), initTask);
    for (int i = taskIteratorList.size() - 1; i >= 0; i--) {
        TaskIterator ti = taskIteratorList.get(i);
        taskIterator.insertTasksAfter(initTask, ti);
    }
    taskManager.execute(taskIterator);
}