Examples with CyTable org.cytoscape.model.CyTable used on opensource projects

Example 21 with CyTable

use of org.cytoscape.model.CyTable in project cytoscape-impl by cytoscape.

the class DefaultTableBrowser method handleEvent.

@Override
public void handleEvent(final TableAboutToBeDeletedEvent e) {
    final CyTable cyTable = e.getTable();
    final BrowserTable table = getBrowserTable(cyTable);
    if (table != null) {
        ((DefaultComboBoxModel<CyTable>) getTableChooser().getModel()).removeElement(cyTable);
        // We need this to happen synchronously or we get royally messed up by the new table selection
        invokeOnEDTAndWait(() -> {
            getToolBar().updateEnableState(getTableChooser());
            removeTable(cyTable);
        });
    }
}

Example 22 with CyTable

use of org.cytoscape.model.CyTable in project cytoscape-impl by cytoscape.

the class FormulaBuilderDialog method updateCells.

private boolean updateCells(final StringBuilder errorMessage) {
    String formula = getFormulaTextField().getText();
    if (formula.charAt(formula.length() - 1) != ')')
        formula = formula + ")";
    final int cellColum = table.convertColumnIndexToModel(table.getSelectedColumn());
    final String attribName = tableModel.getColumnName(cellColum);
    final CyTable attribs = tableModel.getDataTable();
    final Equation equation = compileEquation(attribs, attribName, formula, errorMessage);
    if (equation == null)
        return false;
    switch(applicationDomain) {
        case CURRENT_CELL:
            final int cellRow = table.convertRowIndexToModel(table.getSelectedRow());
            tableModel.setValueAt(formula, cellRow, cellColum);
            break;
        case CURRENT_SELECTION:
            final Collection<CyRow> selectedRows = tableModel.getDataTable().getMatchingRows(CyNetwork.SELECTED, true);
            for (final CyRow selectedRow : selectedRows) {
                if (!setAttribute(selectedRow, attribName, equation, errorMessage))
                    return false;
            }
            break;
        case ENTIRE_ATTRIBUTE:
            final List<CyRow> rows = tableModel.getDataTable().getAllRows();
            for (final CyRow row : rows) {
                if (!setAttribute(row, attribName, equation, errorMessage))
                    return false;
            }
            break;
        default:
            throw new IllegalStateException("unknown application domain: " + applicationDomain + ".");
    }
    return true;
}

Example 23 with CyTable

use of org.cytoscape.model.CyTable in project cytoscape-impl by cytoscape.

the class TableChooserCellRenderer method getListCellRendererComponent.

@Override
public Component getListCellRendererComponent(final JList<?> list, final Object value, final int index, final boolean isSelected, final boolean cellHasFocus) {
    super.getListCellRendererComponent(list, value, index, isSelected, cellHasFocus);
    if (isSelected) {
        setBackground(list.getSelectionBackground());
        setForeground(list.getSelectionForeground());
    } else {
        setBackground(list.getBackground());
        setForeground(list.getForeground());
    }
    if (value instanceof CyTable == false) {
        setText("-- No Table --");
        return this;
    }
    final CyTable table = (CyTable) value;
    String label = tableToStringMap.get(table);
    if (label == null)
        label = table == null ? "-- No Table --" : table.getTitle();
    if (!label.toLowerCase().contains("table"))
        label += " Table";
    if (table != null && !table.isPublic())
        label += " [ PRIVATE ]";
    setText(label);
    if (!isSelected)
        setForeground(table.isPublic() ? list.getForeground() : LookAndFeelUtil.getErrorColor());
    return this;
}

Example 24 with CyTable

use of org.cytoscape.model.CyTable in project cytoscape-impl by cytoscape.

the class BrowserTable method handleEvent.

@Override
public void handleEvent(final ColumnNameChangedEvent e) {
    BrowserTableModel model = (BrowserTableModel) getModel();
    CyTable dataTable = model.getDataTable();
    if (e.getSource() != dataTable)
        return;
    renameColumnName(e.getOldColumnName(), e.getNewColumnName());
    if (SwingUtilities.isEventDispatchThread()) {
        tableHeader.repaint();
    } else {
        SwingUtilities.invokeLater(new Runnable() {

            public void run() {
                tableHeader.repaint();
            }
        });
    }
}

Example 25 with CyTable

use of org.cytoscape.model.CyTable in project cytoscape-impl by cytoscape.

the class BrowserTable method handleEvent.

@Override
public void handleEvent(final RowsSetEvent e) {
    if (isEditing()) {
        getCellEditor().stopCellEditing();
    }
    if (ignoreRowSetEvents)
        return;
    final BrowserTableModel model = (BrowserTableModel) getModel();
    final CyTable dataTable = model.getDataTable();
    if (e.getSource() != dataTable)
        return;
    if (model.getViewMode() == BrowserTableModel.ViewMode.SELECTED || model.getViewMode() == BrowserTableModel.ViewMode.AUTO) {
        model.clearSelectedRows();
        boolean foundANonSelectedColumnName = false;
        for (String column : e.getColumns()) {
            if (!CyNetwork.SELECTED.equals(column)) {
                foundANonSelectedColumnName = true;
                break;
            }
        }
        if (!foundANonSelectedColumnName) {
            model.fireTableDataChanged();
            return;
        }
    }
    final Collection<RowSetRecord> rows = e.getPayloadCollection();
    synchronized (this) {
        if (model.getViewMode() == BrowserTableModel.ViewMode.SELECTED || model.getViewMode() == BrowserTableModel.ViewMode.AUTO) {
            model.fireTableDataChanged();
        } else {
            final CyTableManager tableManager = serviceRegistrar.getService(CyTableManager.class);
            if (!tableManager.getGlobalTables().contains(dataTable))
                bulkUpdate(rows);
        }
    }
}