Examples with CyTable org.cytoscape.model.CyTable used on opensource projects

Example 96 with CyTable

use of org.cytoscape.model.CyTable in project cytoscape-impl by cytoscape.

the class ListTablesTask method run.

@Override
public void run(final TaskMonitor taskMonitor) {
    Set<CyTable> allTables = cyTableManager.getAllTables(includePrivate);
    tables = new ArrayList<CyTable>();
    String requestedType = type.getSelectedValue();
    String requestedNamespace = getNamespace(namespace);
    for (CyTable table : allTables) {
        if (!requestedType.equals("all")) {
            Class<? extends CyIdentifiable> tableClass = networkTableMgr.getTableType(table);
            if (tableClass != null && !requestedType.equals("unattached")) {
                String strClass = DataUtils.getIdentifiableType(tableClass);
                if (!strClass.equalsIgnoreCase(requestedType))
                    continue;
                if (!requestedNamespace.equalsIgnoreCase(networkTableMgr.getTableNamespace(table)))
                    continue;
            } else if (tableClass != null && requestedType.equals("unattached")) {
                continue;
            }
        }
        taskMonitor.showMessage(TaskMonitor.Level.INFO, "Table " + getTableDescription(table));
        tables.add(table);
    }
}

Example 97 with CyTable

use of org.cytoscape.model.CyTable in project cytoscape-impl by cytoscape.

the class CreateEdgeAttributeTask method run.

@Override
public void run(final TaskMonitor taskMonitor) {
    if (network == null)
        network = appMgr.getCurrentNetwork();
    CyTable edgeTable = getNetworkTable(network, CyEdge.class, columnTunable.getNamespace());
    try {
        createColumn(edgeTable, columnTunable.getColumnName(), columnTypeTunable.getColumnType(), columnTypeTunable.getListElementType());
        success = true;
        if (columnTypeTunable.getColumnType() == "list")
            taskMonitor.showMessage(TaskMonitor.Level.INFO, "Created new " + columnTypeTunable.getListElementType() + " list column: " + columnTunable.getColumnName());
        else
            taskMonitor.showMessage(TaskMonitor.Level.INFO, "Created new " + columnTypeTunable.getColumnType() + " column: " + columnTunable.getColumnName());
    } catch (Exception e) {
        taskMonitor.showMessage(TaskMonitor.Level.ERROR, "Unable to create new column: " + e.getMessage());
    }
}

Example 98 with CyTable

use of org.cytoscape.model.CyTable in project cytoscape-impl by cytoscape.

the class ListNetworkAttributesTask method run.

@Override
public void run(final TaskMonitor taskMonitor) {
    if (network == null)
        network = appMgr.getCurrentNetwork();
    CyTable networkTable = getNetworkTable(network, CyNetwork.class, namespace);
    columnList = networkTable.getColumns();
    taskMonitor.showMessage(TaskMonitor.Level.INFO, "   Attributes for network " + DataUtils.getNetworkName(network) + ":");
    for (CyColumn column : columnList) {
        if (column.getType().equals(List.class))
            taskMonitor.showMessage(TaskMonitor.Level.INFO, "        " + column.getName() + ": " + DataUtils.getType(column.getListElementType()) + " list");
        else
            taskMonitor.showMessage(TaskMonitor.Level.INFO, "        " + column.getName() + ": " + DataUtils.getType(column.getType()));
    }
}

Example 99 with CyTable

use of org.cytoscape.model.CyTable in project cytoscape-impl by cytoscape.

the class ListNodeAttributesTask method run.

@Override
public void run(final TaskMonitor taskMonitor) {
    if (network == null)
        network = appMgr.getCurrentNetwork();
    CyTable networkTable = getNetworkTable(network, CyNode.class, namespace);
    columnList = networkTable.getColumns();
    taskMonitor.showMessage(TaskMonitor.Level.INFO, "   Node columns for network " + DataUtils.getNetworkName(network) + ":");
    for (CyColumn column : columnList) {
        if (column.getType().equals(List.class))
            taskMonitor.showMessage(TaskMonitor.Level.INFO, "        " + column.getName() + ": " + DataUtils.getType(column.getListElementType()) + " list");
        else
            taskMonitor.showMessage(TaskMonitor.Level.INFO, "        " + column.getName() + ": " + DataUtils.getType(column.getType()));
    }
}

Example 100 with CyTable

use of org.cytoscape.model.CyTable in project cytoscape-impl by cytoscape.

the class MapGlobalToLocalTableTaskFactoryImpl method createTaskIterator.

@Override
public TaskIterator createTaskIterator(CyTable globalTable, Collection<CyTable> localTables) {
    final Map<String, Object> m = new HashMap<String, Object>();
    List<String> localTableTitles = new ArrayList<String>();
    for (CyTable local : localTables) {
        localTableTitles.add(local.getTitle());
    }
    ListMultipleSelection<String> localTablesTunable = new ListMultipleSelection<String>(localTableTitles);
    localTablesTunable.setSelectedValues(localTableTitles);
    m.put("localTables", localTablesTunable);
    return tunableSetter.createTaskIterator(this.createTaskIterator(globalTable), m);
}