Examples with CyTable org.cytoscape.model.CyTable used on opensource projects

Example 81 with CyTable

use of org.cytoscape.model.CyTable in project cytoscape-impl by cytoscape.

the class JoinTablesTaskTest method createTable.

private final CyTable createTable(String col, String listCol) {
    CyTable table1 = new CyTableImpl("dummy table", "ID", String.class, true, true, SavePolicy.DO_NOT_SAVE, eventHelper, ColumnDataFactory.createDefaultFactory(), new InterpreterImpl(), 2);
    table1.createColumn(col, String.class, false);
    CyRow row1 = table1.getRow(node1Name);
    row1.set(col, "col1 row1");
    CyRow row2 = table1.getRow(node2Name);
    row2.set(col, "col1 row2");
    List<String> s = new ArrayList<String>();
    s.add("listRow1-1");
    s.add("listRow1-2");
    List<String> s2 = new ArrayList<String>();
    s2.add("listRow2-1");
    s2.add("listRow2-2");
    table1.createListColumn(listCol, String.class, false);
    CyRow listRow1 = table1.getRow(node1Name);
    listRow1.set(listCol, s);
    CyRow listRow2 = table1.getRow(node2Name);
    listRow2.set(listCol, s2);
    return table1;
}

Example 82 with CyTable

use of org.cytoscape.model.CyTable in project cytoscape-impl by cytoscape.

the class JoinTablesTaskTest method testJoinTableToSubNetwork.

@Test
public void testJoinTableToSubNetwork() throws Exception {
    stm.addTunableHandlerFactory(syncTunableHandlerFactory, syncFactoryProp);
    creatNetwork();
    final CyTable table2 = createTable("col2", "listCol2");
    join(table2, net1, null, net1.getDefaultNodeTable().getColumn(CyNetwork.NAME), true);
    testJoinTableToSubNetworkColumns();
    testJoinTableToSubNetworkListColumns();
    testSubnetworkAfterJointoSub();
}

Example 83 with CyTable

use of org.cytoscape.model.CyTable in project cytoscape-impl by cytoscape.

the class CyGroupImpl method updateCountAttributes.

public void updateCountAttributes(CyNetwork net) {
    CyTable nodeTable = net.getDefaultNodeTable();
    CyColumn childrenColumn = nodeTable.getColumn(CHILDREN_ATTR);
    if (childrenColumn == null) {
        nodeTable.createColumn(CHILDREN_ATTR, Integer.class, true);
    }
    if (!nodeTable.rowExists(groupNode.getSUID())) {
        // Shouldn't happen!
        return;
    }
    CyRow groupRow = nodeTable.getRow(groupNode.getSUID());
    // Fix up the NAME
    if (neverCollapsed) {
        groupRow.set(CyNetwork.NAME, groupRow.get(CyRootNetwork.SHARED_NAME, String.class));
        neverCollapsed = false;
    }
    groupRow.set(CHILDREN_ATTR, getGroupNetwork().getNodeCount());
    CyColumn descendentsColumn = nodeTable.getColumn(DESCENDENTS_ATTR);
    if (descendentsColumn == null) {
        nodeTable.createColumn(DESCENDENTS_ATTR, Integer.class, true);
    }
    int nDescendents = getGroupNetwork().getNodeCount();
    for (CyNode node : getGroupNetwork().getNodeList()) {
        if (mgr.isGroup(node, rootNetwork)) {
            Integer d = nodeTable.getRow(node.getSUID()).get(DESCENDENTS_ATTR, Integer.class);
            if (d != null)
                nDescendents += d.intValue();
        }
    }
    groupRow.set(DESCENDENTS_ATTR, nDescendents);
}

Example 84 with CyTable

use of org.cytoscape.model.CyTable in project cytoscape-impl by cytoscape.

the class ViewUtils method getLocation.

/**
 * Get the saved location of the group node
 */
public static Dimension getLocation(CyNetwork network, CyGroup group) {
    CyNetwork groupNetwork = group.getGroupNetwork();
    CyTable netTable = groupNetwork.getTable(CyNetwork.class, CyNetwork.HIDDEN_ATTRS);
    Dimension dim = getNodeLocation(netTable, network, groupNetwork.getSUID());
    // System.out.println("Group node should be at: "+dim);
    return dim;
}

Example 85 with CyTable

use of org.cytoscape.model.CyTable in project cytoscape-impl by cytoscape.

the class ViewUtils method updateNodeOffset.

public static void updateNodeOffset(CyNetwork network, CyGroup group, CyNode node, Dimension offset) {
    CyTable nodeTable = group.getGroupNetwork().getTable(CyNode.class, CyNetwork.HIDDEN_ATTRS);
    updateNodeLocation(nodeTable, network, node.getSUID(), offset);
}