Examples with CyTable org.cytoscape.model.CyTable used on opensource projects

Example 76 with CyTable

use of org.cytoscape.model.CyTable in project cytoscape-impl by cytoscape.

the class ViewUtil method getParent.

public static CySubNetwork getParent(final CySubNetwork net, final CyServiceRegistrar serviceRegistrar) {
    final CyTable hiddenTable = net.getTable(CyNetwork.class, CyNetwork.HIDDEN_ATTRS);
    final CyRow row = hiddenTable != null ? hiddenTable.getRow(net.getSUID()) : null;
    final Long suid = row != null ? row.get(PARENT_NETWORK_COLUMN, Long.class) : null;
    if (suid != null) {
        final CyNetwork parent = serviceRegistrar.getService(CyNetworkManager.class).getNetwork(suid);
        if (parent instanceof CySubNetwork)
            return (CySubNetwork) parent;
    }
    return null;
}

Example 77 with CyTable

use of org.cytoscape.model.CyTable in project cytoscape-impl by cytoscape.

the class DynamicLayoutMenu method addNodeAttributeMenus.

private void addNodeAttributeMenus(final JMenu parent, final boolean selectedOnly) {
    CyNetwork network = networkRef.get();
    if (network != null) {
        final CyTable nodeAttributes = network.getDefaultNodeTable();
        addAttributeMenus(parent, nodeAttributes, layout.getSupportedNodeAttributeTypes(), selectedOnly);
    }
}

Example 78 with CyTable

use of org.cytoscape.model.CyTable in project cytoscape-impl by cytoscape.

the class DynamicLayoutMenu method addEdgeAttributeMenus.

private void addEdgeAttributeMenus(final JMenu parent, final boolean selectedOnly) {
    CyNetwork network = networkRef.get();
    if (network != null) {
        final CyTable edgeAttributes = network.getDefaultEdgeTable();
        addAttributeMenus(parent, edgeAttributes, layout.getSupportedEdgeAttributeTypes(), selectedOnly);
    }
}

Example 79 with CyTable

use of org.cytoscape.model.CyTable in project cytoscape-impl by cytoscape.

the class LayoutSettingsDialog method getAttributeList.

private List<String> getAttributeList(CyNetwork network, Set<Class<?>> allowedNodeAttributeTypes, Set<Class<?>> allowedEdgeAttributeTypes) {
    List<String> attributes = new ArrayList<String>();
    Set<Class<?>> allowedTypes;
    CyTable table;
    if (allowedNodeAttributeTypes.size() > 0) {
        allowedTypes = allowedNodeAttributeTypes;
        table = network.getDefaultNodeTable();
    } else if (allowedEdgeAttributeTypes.size() > 0) {
        allowedTypes = allowedEdgeAttributeTypes;
        table = network.getDefaultEdgeTable();
    } else {
        return attributes;
    }
    for (final CyColumn column : table.getColumns()) {
        if (column.getName().equals(CyNetwork.SELECTED) || column.getName().equals(CyNetwork.SUID))
            continue;
        if (allowedTypes.contains(column.getType())) {
            attributes.add(column.getName());
        }
    }
    Collections.sort(attributes);
    if (attributes.size() > 0)
        attributes.add(0, UNWEIGHTED);
    return attributes;
}

Example 80 with CyTable

use of org.cytoscape.model.CyTable in project cytoscape-impl by cytoscape.

the class LayoutSettingsDialog method hasSelectedNodes.

private boolean hasSelectedNodes(final CyNetworkView view) {
    if (view == null)
        return false;
    final CyNetwork network = view.getModel();
    final CyTable table = network.getDefaultNodeTable();
    return table.countMatchingRows(CyNetwork.SELECTED, Boolean.TRUE) > 0;
}