Examples with CyTable org.cytoscape.model.CyTable used on opensource projects

Example 91 with CyTable

use of org.cytoscape.model.CyTable in project cytoscape-impl by cytoscape.

the class ImportTableDataTask method getResults.

@Override
public Object getResults(Class requestedType) {
    if (requestedType.equals(List.class))
        return mappedTables;
    if (requestedType.equals(String.class)) {
        String str = "Mapped to tables:\n";
        for (CyTable table : mappedTables) {
            str += "   " + table.toString() + "\n";
        }
        return str;
    }
    if (requestedType.equals(JSONResult.class)) {
        CyJSONUtil cyJSONUtil = serviceRegistrar.getService(CyJSONUtil.class);
        JSONResult res = () -> {
            if (mappedTables.isEmpty())
                return "{}";
            return "{\"mappedTables\":" + cyJSONUtil.cyIdentifiablesToJson(mappedTables) + "}";
        };
        return res;
    }
    return null;
}

Example 92 with CyTable

use of org.cytoscape.model.CyTable in project cytoscape-impl by cytoscape.

the class ImportTableDataTask method addTable.

private void addTable() {
    final CyTableManager tableMgr = serviceRegistrar.getService(CyTableManager.class);
    if (byReader) {
        if (this.reader != null && this.reader.getTables() != null) {
            for (CyTable table : reader.getTables()) {
                if (!newTableName.isEmpty())
                    table.setTitle(newTableName);
                tableMgr.addTable(table);
            }
        } else {
            if (reader == null)
                logger.warn("reader is null.");
            else
                logger.warn("No tables in reader.");
        }
    } else {
        if (tableMgr.getTable(globalTable.getSUID()) != null) {
            tableMgr.deleteTable(globalTable.getSUID());
            globalTable.setPublic(true);
        }
        if (!newTableName.isEmpty())
            globalTable.setTitle(newTableName);
        tableMgr.addTable(globalTable);
        mappedTables.add(globalTable);
    }
}

Example 93 with CyTable

use of org.cytoscape.model.CyTable in project cytoscape-impl by cytoscape.

the class JoinTablesTask method applyMapping.

private void applyMapping(CyTable targetTable) {
    if (byReader) {
        if (reader.getTables() != null && reader.getTables().length > 0) {
            for (CyTable sourceTable : reader.getTables()) {
                copyColumns(sourceTable, targetTable);
                copyRows(sourceTable, targetTable);
            }
        }
    } else {
        copyColumns(globalTable, targetTable);
        copyRows(globalTable, targetTable);
    }
}

Example 94 with CyTable

use of org.cytoscape.model.CyTable in project cytoscape-impl by cytoscape.

the class ListColumnsTask method run.

@Override
public void run(final TaskMonitor taskMonitor) {
    CyTable requestedTable = table.getTable();
    if (requestedTable == null) {
        taskMonitor.showMessage(TaskMonitor.Level.ERROR, "Unable to find table '" + table.getTableString() + "'");
        return;
    }
    columns = new ArrayList<CyColumn>(requestedTable.getColumns());
    taskMonitor.showMessage(TaskMonitor.Level.INFO, "Columns for table " + getTableDescription(requestedTable) + ":");
    for (CyColumn column : columns) taskMonitor.showMessage(TaskMonitor.Level.INFO, "         " + column.toString());
}

Example 95 with CyTable

use of org.cytoscape.model.CyTable in project cytoscape-impl by cytoscape.

the class ListEdgeAttributesTask method run.

@Override
public void run(final TaskMonitor taskMonitor) {
    if (network == null)
        network = appMgr.getCurrentNetwork();
    CyTable networkTable = getNetworkTable(network, CyEdge.class, namespace);
    columnList = networkTable.getColumns();
    taskMonitor.showMessage(TaskMonitor.Level.INFO, "   Edge columns for network " + DataUtils.getNetworkName(network) + ":");
    for (CyColumn column : columnList) {
        if (column.getType().equals(List.class))
            taskMonitor.showMessage(TaskMonitor.Level.INFO, "        " + column.getName() + ": " + DataUtils.getType(column.getListElementType()) + " list");
        else
            taskMonitor.showMessage(TaskMonitor.Level.INFO, "        " + column.getName() + ": " + DataUtils.getType(column.getType()));
    }
}