Examples with CyTable org.cytoscape.model.CyTable used on opensource projects

Example 71 with CyTable

use of org.cytoscape.model.CyTable in project cytoscape-impl by cytoscape.

the class LoadMultipleNetworksTask method getTargetColumns.

private final ListSingleSelection<String> getTargetColumns(final CyNetwork network) {
    final CyTable selectedTable = network.getTable(CyNode.class, CyRootNetwork.SHARED_ATTRS);
    final List<String> colNames = new ArrayList<>();
    for (CyColumn col : selectedTable.getColumns()) {
        // Exclude SUID from the mapping key list
        if (!col.getName().equalsIgnoreCase(CyIdentifiable.SUID) && !col.getName().endsWith(".SUID") && (col.getType() == String.class || col.getType() == Integer.class || col.getType() == Long.class))
            colNames.add(col.getName());
    }
    if (colNames.isEmpty() || (colNames.size() == 1 && colNames.contains(CyRootNetwork.SHARED_NAME)))
        return new ListSingleSelection<>();
    sort(colNames);
    return new ListSingleSelection<>(colNames);
}

Example 72 with CyTable

use of org.cytoscape.model.CyTable in project cytoscape-impl by cytoscape.

the class ModelMonitor method checkType.

public boolean checkType(String name, Class<?> columnType, Class<?> targetType) {
    synchronized (lock) {
        if (network == null) {
            return false;
        }
        CyTable table = getTable(columnType);
        if (table == null) {
            return false;
        }
        CyColumn column = table.getColumn(name);
        if (column == null) {
            return false;
        }
        Class<?> type = column.getType();
        if (List.class.equals(type)) {
            return targetType.equals(column.getListElementType());
        }
        return targetType.equals(type);
    }
}

Example 73 with CyTable

use of org.cytoscape.model.CyTable in project cytoscape-impl by cytoscape.

the class ModelMonitor method updateColumnSliders.

private void updateColumnSliders() {
    for (ColumnFilterController controller : columnViews.values()) {
        ColumnFilter filter = controller.getFilter();
        Class<? extends CyIdentifiable> columnType = filter.getTableType();
        Number[] range;
        String name = filter.getColumnName();
        if (name == null) {
            continue;
        }
        CyTable table;
        if (CyNode.class.equals(columnType)) {
            table = network.getDefaultNodeTable();
            range = getColumnRange(table, name, nodeColumnRanges);
        } else if (CyEdge.class.equals(columnType)) {
            table = network.getDefaultEdgeTable();
            range = getColumnRange(table, name, edgeColumnRanges);
        } else {
            continue;
        }
        CyColumn column = table.getColumn(name);
        if (column == null) {
            continue;
        }
        Class<?> type = column.getType();
        if (List.class.equals(type)) {
            type = column.getListElementType();
        }
        if (Integer.class.equals(type) || Long.class.equals(type)) {
            controller.setSliderBounds(range[0].longValue(), range[1].longValue());
        } else {
            controller.setSliderBounds(range[0].doubleValue(), range[1].doubleValue());
        }
    }
}

Example 74 with CyTable

use of org.cytoscape.model.CyTable in project cytoscape-impl by cytoscape.

the class ModelMonitor method handleEvent.

@Override
public void handleEvent(ColumnNameChangedEvent event) {
    synchronized (lock) {
        if (network == null) {
            return;
        }
        CyTable nodeTable = network.getDefaultNodeTable();
        CyTable edgeTable = network.getDefaultEdgeTable();
        CyTable table = event.getSource();
        CyColumn column = table.getColumn(event.getNewColumnName());
        Class<?> type;
        if (table == nodeTable) {
            type = CyNode.class;
        } else if (table == edgeTable) {
            type = CyEdge.class;
        } else {
            return;
        }
        for (int i = 0; i < columnNames.size(); i++) {
            ColumnElement element = columnNames.get(i);
            if (element.getName().equals(event.getOldColumnName()) && type.equals(element.getTableType())) {
                columnNames.remove(i);
                columnNames.add(new ColumnElement(element.getTableType(), column));
                break;
            }
        }
        Collections.sort(columnNames);
        updateColumnViews();
    }
}

Example 75 with CyTable

use of org.cytoscape.model.CyTable in project cytoscape-impl by cytoscape.

the class ColumnFilter method validate.

@Override
public List<ValidationWarning> validate(CyNetwork context) {
    if (context == null)
        return Collections.emptyList();
    CyTable table;
    String tableType;
    Class<?> type = getTableType();
    if (CyNode.class.equals(type)) {
        table = context.getDefaultNodeTable();
        tableType = "Node";
    } else if (CyEdge.class.equals(type)) {
        table = context.getDefaultEdgeTable();
        tableType = "Edge";
    } else {
        return Collections.emptyList();
    }
    if (columnName != null) {
        CyColumn column = table.getColumn(columnName);
        if (column == null) {
            return warn(tableType + " table does not have column <b>\"" + columnName + "\"</b>");
        }
    }
    if (rawCriterion == null || predicate == null) {
        // This filter is incomplete.
        return Collections.emptyList();
    }
    CyColumn column = table.getColumn(columnName);
    Class<?> columnType = column.getType();
    if (columnType.equals(List.class)) {
        columnType = column.getListElementType();
    }
    if (String.class.equals(columnType) && stringCriterion == null) {
        return warn("Column <b>\"" + columnName + "\"</b> in " + tableType + " table is not a String column");
    } else if (Number.class.isAssignableFrom(columnType) && (lowerBound == null || upperBound == null)) {
        return warn("Column <b>\"" + columnName + "\"</b> in " + tableType + " table is not a Numeric column");
    } else if (Boolean.class.equals(columnType) && booleanCriterion == null) {
        return warn("Column <b>\"" + columnName + "\"</b> in " + tableType + " table is not a Boolean column");
    }
    return Collections.emptyList();
}