Examples with VirtualColumnInfo org.cytoscape.model.VirtualColumnInfo used on opensource projects

Example 1 with VirtualColumnInfo

use of org.cytoscape.model.VirtualColumnInfo in project cytoscape-impl by cytoscape.

the class CloneNetworkTask method addVirtualColumn.

private void addVirtualColumn(CyColumn col, CyTable subTable) {
    VirtualColumnInfo colInfo = col.getVirtualColumnInfo();
    CyColumn checkCol = subTable.getColumn(col.getName());
    if (checkCol == null)
        subTable.addVirtualColumn(col.getName(), colInfo.getSourceColumn(), colInfo.getSourceTable(), colInfo.getTargetJoinKey(), true);
    else if (!checkCol.getVirtualColumnInfo().isVirtual() || !checkCol.getVirtualColumnInfo().getSourceTable().equals(colInfo.getSourceTable()) || !checkCol.getVirtualColumnInfo().getSourceColumn().equals(colInfo.getSourceColumn()))
        subTable.addVirtualColumn(col.getName(), colInfo.getSourceColumn(), colInfo.getSourceTable(), colInfo.getTargetJoinKey(), true);
}

Example 2 with VirtualColumnInfo

use of org.cytoscape.model.VirtualColumnInfo in project cytoscape-impl by cytoscape.

the class AbstractNetworkFromSelectionTask method addVirtualColumn.

private void addVirtualColumn(CyColumn col, CyTable subTable) {
    VirtualColumnInfo colInfo = col.getVirtualColumnInfo();
    CyColumn checkCol = subTable.getColumn(col.getName());
    if (checkCol == null)
        subTable.addVirtualColumn(col.getName(), colInfo.getSourceColumn(), colInfo.getSourceTable(), colInfo.getTargetJoinKey(), col.isImmutable());
    else if (!checkCol.getVirtualColumnInfo().isVirtual() || !checkCol.getVirtualColumnInfo().getSourceTable().equals(colInfo.getSourceTable()) || !checkCol.getVirtualColumnInfo().getSourceColumn().equals(colInfo.getSourceColumn()))
        subTable.addVirtualColumn(col.getName(), colInfo.getSourceColumn(), colInfo.getSourceTable(), colInfo.getTargetJoinKey(), col.isImmutable());
}

Example 3 with VirtualColumnInfo

use of org.cytoscape.model.VirtualColumnInfo in project cytoscape-impl by cytoscape.

the class CyTableImpl method createListColumn.

@Override
public <T> void createListColumn(final String columnName, final Class<T> listElementType, final boolean isImmutable, final List<T> defaultValue) {
    synchronized (lock) {
        if (columnName == null)
            throw new NullPointerException("column name is null");
        final String normalizedColName = normalizeColumnName(columnName);
        if (types.containsKey(normalizedColName))
            throw new IllegalArgumentException("column already exists with name: '" + columnName + "' with type: " + types.get(normalizedColName).getType());
        if (listElementType == null)
            throw new NullPointerException("listElementType is null");
        checkClass(listElementType);
        VirtualColumnInfo virtualInfo = NonVirtualColumnInfo.create(isImmutable);
        types.put(normalizedColName, new CyColumnImpl(this, columnName, List.class, listElementType, virtualInfo, /* isPrimaryKey = */
        false, isImmutable, defaultValue));
        attributes.put(normalizedColName, columnFactory.create(primaryKeyType, List.class, listElementType, defaultInitSize));
        colList.add(types.get(normalizedColName));
    }
    eventHelper.fireEvent(new ColumnCreatedEvent(this, columnName));
}

Example 4 with VirtualColumnInfo

use of org.cytoscape.model.VirtualColumnInfo in project cytoscape-impl by cytoscape.

the class CyTableImpl method fireVirtualColumnRowSetEvent.

private void fireVirtualColumnRowSetEvent(CyTableImpl table, Object key, String columnName, Object newValue, Object newRawValue, Set<VirtualColumnInfo> seen) {
    // Fire an event for this table
    CyRow row = table.getRowNoCreate(key);
    if (row == null) {
        return;
    }
    eventHelper.addEventPayload((CyTable) table, new RowSetRecord(row, columnName, newValue, newRawValue), RowsSetEvent.class);
    // ...then fire events for all dependents
    Set<CyColumn> columnDependents;
    synchronized (lock) {
        String normalizedColumnName = normalizeColumnName(columnName);
        columnDependents = dependents.get(normalizedColumnName);
        if (columnDependents == null) {
            return;
        }
    }
    for (CyColumn dependent : columnDependents) {
        VirtualColumnInfo info = dependent.getVirtualColumnInfo();
        if (seen.contains(info)) {
            continue;
        }
        seen.add(info);
        CyTableImpl table2 = (CyTableImpl) dependent.getTable();
        String targetJoinKey = info.getTargetJoinKey();
        if (targetJoinKey.equals(table2.getPrimaryKey().getName())) {
            fireVirtualColumnRowSetEvent(table2, key, dependent.getName(), newValue, newRawValue, seen);
        } else {
            String normalizedTargetJoinKey = table2.normalizeColumnName(targetJoinKey);
            ColumnData keyToValueMap = table2.attributes.get(normalizedTargetJoinKey);
            if (keyToValueMap != null) {
                for (Object key2 : keyToValueMap.keySet()) {
                    if (keyToValueMap.get(key2).equals(key)) {
                        fireVirtualColumnRowSetEvent(table2, key2, dependent.getName(), newValue, newRawValue, seen);
                    }
                }
            }
        }
    }
}

Example 5 with VirtualColumnInfo

use of org.cytoscape.model.VirtualColumnInfo in project cytoscape-impl by cytoscape.

the class CyTableImpl method createColumn.

@Override
public <T> void createColumn(final String columnName, final Class<? extends T> type, final boolean isImmutable, final T defaultValue) {
    synchronized (lock) {
        if (columnName == null)
            throw new NullPointerException("column name is null");
        final String normalizedColName = normalizeColumnName(columnName);
        if (types.containsKey(normalizedColName))
            throw new IllegalArgumentException("column already exists with name: '" + columnName + "' with type: " + types.get(normalizedColName).getType());
        if (type == null)
            throw new NullPointerException("type is null");
        if (type == List.class)
            throw new IllegalArgumentException("use createListColumn() to create List columns instead of createColumn for column '" + columnName + "'.");
        checkClass(type);
        VirtualColumnInfo virtualInfo = NonVirtualColumnInfo.create(isImmutable);
        types.put(normalizedColName, new CyColumnImpl(this, columnName, type, /* listElementType = */
        null, virtualInfo, /* isPrimaryKey = */
        false, isImmutable, defaultValue));
        attributes.put(normalizedColName, columnFactory.create(primaryKeyType, type, null, defaultInitSize));
        colList.add(types.get(normalizedColName));
    }
    eventHelper.fireEvent(new ColumnCreatedEvent(this, columnName));
}