Examples with CySubNetwork org.cytoscape.model.subnetwork.CySubNetwork used on opensource projects

Example 51 with CySubNetwork

use of org.cytoscape.model.subnetwork.CySubNetwork in project cytoscape-impl by cytoscape.

the class NetworkMainPanel method maybeShowViewPopup.

private void maybeShowViewPopup(final SubNetworkPanel item) {
    final CySubNetwork network = item.getModel().getNetwork();
    if (viewDialog != null) {
        if (// Clicking the same item--will probably never happen
        viewDialog.getNetwork().equals(network))
            return;
        viewDialog.dispose();
    }
    if (item.getModel().getViewCount() > 0) {
        final Window windowAncestor = SwingUtilities.getWindowAncestor(item);
        final CyNetworkView currentView = serviceRegistrar.getService(CyApplicationManager.class).getCurrentNetworkView();
        viewDialog = new NetworkViewPreviewDialog(network, currentView, windowAncestor, serviceRegistrar);
        viewDialog.addWindowFocusListener(new WindowFocusListener() {

            @Override
            public void windowLostFocus(WindowEvent e) {
                viewDialog.dispose();
            }

            @Override
            public void windowGainedFocus(WindowEvent e) {
            }
        });
        viewDialog.addWindowListener(new WindowAdapter() {

            @Override
            public void windowClosed(WindowEvent e) {
                viewDialog = null;
            }
        });
        viewDialog.addKeyListener(new KeyAdapter() {

            @Override
            public void keyPressed(KeyEvent e) {
                if (e.getKeyCode() == KeyEvent.VK_ESCAPE)
                    viewDialog.dispose();
            }
        });
        viewDialog.addPropertyChangeListener("currentNetworkView", (PropertyChangeEvent evt) -> {
            // TODO Move to NetworkSelectionMediator
            serviceRegistrar.getService(CyApplicationManager.class).setCurrentNetworkView((CyNetworkView) evt.getNewValue());
        });
        final Point screenPt = item.getViewIconLabel().getLocationOnScreen();
        final Point compPt = item.getViewIconLabel().getLocation();
        int xOffset = screenPt.x - compPt.x - item.getViewIconLabel().getWidth() / 2;
        int yOffset = screenPt.y - compPt.y + item.getViewIconLabel().getBounds().height - 2;
        final Point pt = item.getViewIconLabel().getBounds().getLocation();
        pt.translate(xOffset, yOffset);
        viewDialog.setLocation(pt);
        viewDialog.setVisible(true);
        viewDialog.requestFocusInWindow();
    }
}

Example 52 with CySubNetwork

use of org.cytoscape.model.subnetwork.CySubNetwork in project cytoscape-impl by cytoscape.

the class RootNetworkPanel method getDepth.

private int getDepth(final CySubNetwork net) {
    int depth = -1;
    CySubNetwork parent = net;
    do {
        parent = ViewUtil.getParent(parent, serviceRegistrar);
        depth++;
    } while (parent != null);
    return depth;
}

Example 53 with CySubNetwork

use of org.cytoscape.model.subnetwork.CySubNetwork in project cytoscape-impl by cytoscape.

the class RootNetworkPanel method addItem.

public SubNetworkPanel addItem(final CySubNetwork network) {
    if (!getItems().containsKey(network)) {
        final SubNetworkPanelModel model = new SubNetworkPanelModel(network, serviceRegistrar);
        final SubNetworkPanel subNetPanel = new SubNetworkPanel(model, showIndentation, serviceRegistrar);
        subNetPanel.setAlignmentX(LEFT_ALIGNMENT);
        final CySubNetwork parentNet = ViewUtil.getParent(network, serviceRegistrar);
        if (parentNet == null) {
            // No parent network? So just add it to the end of the list...
            getSubNetListPanel().add(subNetPanel);
            getItems().put(network, subNetPanel);
        } else {
            // It has a parent network, so let's find the position where it must be inserted...
            final LinkedHashMap<CySubNetwork, SubNetworkPanel> newItems = new LinkedHashMap<>();
            // New item added to the map?
            boolean newItemAdded = false;
            boolean parentItemFound = false;
            for (Entry<CySubNetwork, SubNetworkPanel> entry : getItems().entrySet()) {
                if (!newItemAdded) {
                    if (!parentItemFound && entry.getKey().equals(parentNet)) {
                        // We found the parent of the new item
                        parentItemFound = true;
                    } else if (parentItemFound) {
                        // we know this is the position where the new item must be inserted
                        if (!entry.getValue().isDescendantOf(parentNet)) {
                            newItems.put(network, subNetPanel);
                            newItemAdded = true;
                        }
                    }
                }
                newItems.put(entry.getKey(), entry.getValue());
            }
            if (!newItemAdded) {
                // Just add the new item to the end...
                getSubNetListPanel().add(subNetPanel);
                getItems().put(network, subNetPanel);
            } else {
                // Rebuild the whole list...
                getSubNetListPanel().removeAll();
                getItems().clear();
                for (Entry<CySubNetwork, SubNetworkPanel> entry : newItems.entrySet()) {
                    getSubNetListPanel().add(entry.getValue());
                    getItems().put(entry.getKey(), entry.getValue());
                }
            }
        }
        updateRootPanel();
    }
    return getItems().get(network);
}

Example 54 with CySubNetwork

use of org.cytoscape.model.subnetwork.CySubNetwork in project cytoscape-impl by cytoscape.

the class NetworkMediator method handleEvent.

@Override
public void handleEvent(final NetworkAddedEvent e) {
    if (loadingSession)
        return;
    final CyNetwork net = e.getNetwork();
    invokeOnEDT(() -> {
        if (net instanceof CySubNetwork) {
            networkMainPanel.addNetwork((CySubNetwork) net);
            networkMainPanel.updateNodeEdgeCount();
        }
    });
}

Example 55 with CySubNetwork

use of org.cytoscape.model.subnetwork.CySubNetwork in project cytoscape-impl by cytoscape.

the class NetworkLineParser method createNode.

private CyNode createNode(final String[] parts, final Integer nodeIndex) {
    CyNode node = null;
    if (nodeIndex.equals(-1) == false && (nodeIndex <= (parts.length - 1)) && (parts[nodeIndex] != null)) {
        if (this.nMap.get(parts[nodeIndex]) == null) {
            // Node does not exist yet, create it
            node = network.addNode();
            network.getRow(node).set("name", parts[nodeIndex]);
            nMap.put(parts[nodeIndex], rootNetwork.getNode(node.getSUID()));
            nodeList.add(node.getSUID());
        } else {
            // Node already exists in parent network
            CyNode parentNode = this.nMap.get(parts[nodeIndex]);
            CySubNetwork subnet = (CySubNetwork) network;
            subnet.addNode(parentNode);
            node = subnet.getNode(parentNode.getSUID());
        }
    }
    return node;
}