Examples with CyServiceRegistrar org.cytoscape.service.util.CyServiceRegistrar used on opensource projects

Example 61 with CyServiceRegistrar

use of org.cytoscape.service.util.CyServiceRegistrar in project PhenomeScape by soulj.

the class CyActivator method start.

@Override
public void start(BundleContext context) throws Exception {
    CyServiceRegistrar cyServiceRegistrar = getService(context, CyServiceRegistrar.class);
    CyApplicationManager cyApplicationManager = getService(context, CyApplicationManager.class);
    LoadHumanNetworkMenuAction loadHumanNetworkMenuAction = new LoadHumanNetworkMenuAction(cyApplicationManager, cyServiceRegistrar);
    LoadMouseNetworkMenuAction loadMouseNetworkMenuAction = new LoadMouseNetworkMenuAction(cyApplicationManager, cyServiceRegistrar);
    TableManager myTableManager = new TableManager(cyServiceRegistrar);
    Properties properties = new Properties();
    registerAllServices(context, loadHumanNetworkMenuAction, properties);
    registerAllServices(context, loadMouseNetworkMenuAction, properties);
    CyTableManager cyTableManager = getService(context, CyTableManager.class);
    ControlPanel myControlPanel = new ControlPanel(cyServiceRegistrar, cyTableManager);
    registerService(context, myControlPanel, CytoPanelComponent.class, properties);
    ResultsPanel myResultsPanel = new ResultsPanel(cyServiceRegistrar);
    registerService(context, myResultsPanel, CytoPanelComponent.class, properties);
}

Example 62 with CyServiceRegistrar

use of org.cytoscape.service.util.CyServiceRegistrar in project PhenomeScape by soulj.

the class NetworkSelectedListener method itemStateChanged.

@Override
public void itemStateChanged(ItemEvent event) {
    if (event.getStateChange() == ItemEvent.SELECTED) {
        CyServiceRegistrar cyServiceRegistrar = controlPanel.cyServiceRegistrar;
        JComboBox comboBox = (JComboBox) event.getSource();
        String item = (String) comboBox.getSelectedItem();
        CommandExecutor.execute("network set current network=" + '"' + item + '"', cyServiceRegistrar);
        CyNetwork selectedNetwork = cyServiceRegistrar.getService(CyApplicationManager.class).getCurrentNetwork();
        CyTable selectedTable = selectedNetwork.getDefaultNodeTable();
        Collection<CyColumn> columns = selectedTable.getColumns();
        DefaultComboBoxModel geneNameComboModel = new DefaultComboBoxModel();
        DefaultComboBoxModel foldChangeComboModel = new DefaultComboBoxModel();
        DefaultComboBoxModel pvalueComboModel = new DefaultComboBoxModel();
        for (CyColumn column : columns) {
            geneNameComboModel.addElement(column.getName());
            foldChangeComboModel.addElement(column.getName());
            pvalueComboModel.addElement(column.getName());
        }
        controlPanel.setGeneName(geneNameComboModel);
        controlPanel.setFoldChange(foldChangeComboModel);
        controlPanel.setPvalue(pvalueComboModel);
    }
}