Examples with CyServiceRegistrar org.cytoscape.service.util.CyServiceRegistrar used on opensource projects

Example 41 with CyServiceRegistrar

use of org.cytoscape.service.util.CyServiceRegistrar in project cytoscape-impl by cytoscape.

the class CyActivator method start.

@Override
public void start(BundleContext bc) {
    final CyServiceRegistrar serviceRegistrar = getService(bc, CyServiceRegistrar.class);
    final CySwingApplication cySwingApplicationServiceRef = getService(bc, CySwingApplication.class);
    final CyApplicationManager cyApplicationManagerServiceRef = getService(bc, CyApplicationManager.class);
    final CyNetworkViewManager cyNetworkViewManagerServiceRef = getService(bc, CyNetworkViewManager.class);
    invokeOnEDTAndWait(() -> {
        controlPanel = new ControlPanel(serviceRegistrar);
        controlPanelAction = new ControlPanelAction(controlPanel, cySwingApplicationServiceRef, cyApplicationManagerServiceRef, cyNetworkViewManagerServiceRef);
    }, logger);
    registerAllServices(bc, controlPanelAction, new Properties());
    registerAllServices(bc, controlPanel, new Properties());
}

Example 42 with CyServiceRegistrar

use of org.cytoscape.service.util.CyServiceRegistrar in project cytoscape-impl by cytoscape.

the class CyActivator method start.

@Override
public void start(final BundleContext bc) throws Exception {
    final CyServiceRegistrar serviceRegistrar = getService(bc, CyServiceRegistrar.class);
    invokeOnEDTAndWait(() -> {
        setLookAndFeel(bc);
    }, logger);
    // ////////////
    ConfigDirPropertyWriter configDirPropertyWriter = new ConfigDirPropertyWriter(serviceRegistrar);
    registerService(bc, configDirPropertyWriter, CyShutdownListener.class);
    CyHelpBrokerImpl cyHelpBroker = new CyHelpBrokerImpl();
    registerService(bc, cyHelpBroker, CyHelpBroker.class);
    registerServiceListener(bc, configDirPropertyWriter::addCyProperty, configDirPropertyWriter::removeCyProperty, CyProperty.class);
    SimpleGUITunableHandlerFactory<CyPropertyConfirmationHandler> cyPropConfirmHandlerFactory = new SimpleGUITunableHandlerFactory<>(CyPropertyConfirmationHandler.class, CyPropertyConfirmation.class);
    registerService(bc, cyPropConfirmHandlerFactory, GUITunableHandlerFactory.class);
    invokeOnEDTAndWait(() -> {
        initComponents(bc, serviceRegistrar);
    });
    registerService(bc, undoAction, CyAction.class);
    registerService(bc, redoAction, CyAction.class);
    registerService(bc, printAction, CyAction.class);
    registerService(bc, preferenceAction, CyAction.class);
    // registerService(bc, cy3preferenceAction, CyAction.class);
    registerService(bc, bookmarkAction, CyAction.class);
    registerService(bc, settingsAction, CyAction.class);
    registerService(bc, settingsAction, SetCurrentNetworkViewListener.class);
    registerService(bc, cytoPanelWestAction, CyAction.class);
    registerService(bc, cytoPanelSouthAction, CyAction.class);
    registerService(bc, cytoPanelEastAction, CyAction.class);
    registerService(bc, cytoPanelSouthWestAction, CyAction.class);
    registerService(bc, cytoPanelCommandAction, CyAction.class);
    registerService(bc, starterPanelAction, CyAction.class);
    registerService(bc, detachedViewToolBarAction, CyAction.class);
    registerService(bc, closeWindowAction, CyAction.class);
    registerService(bc, cyDesktopManager, CyNetworkViewDesktopMgr.class);
    registerService(bc, bookmarkDialogFactory, SessionLoadedListener.class);
    {
        Properties props = new Properties();
        props.setProperty(PREFERRED_MENU, "Help");
        props.setProperty(TITLE, "User Manual");
        props.setProperty(MENU_GRAVITY, "1.0");
        props.setProperty(TOOLTIP, "Show User Manual");
        registerService(bc, helpUserManualTaskFactory, TaskFactory.class, props);
    }
    {
        Properties props = new Properties();
        props.setProperty(PREFERRED_MENU, "Help");
        props.setProperty(MENU_GRAVITY, "7.0");
        props.setProperty(TITLE, "Contact Help Desk...");
        registerService(bc, helpContactHelpDeskTaskFactory, TaskFactory.class, props);
    }
    {
        Properties props = new Properties();
        props.setProperty(PREFERRED_MENU, "Help");
        props.setProperty(TITLE, "Report a Bug...");
        props.setProperty(MENU_GRAVITY, "8.0");
        registerService(bc, helpReportABugTaskFactory, TaskFactory.class, props);
    }
    {
        Properties props = new Properties();
        props.setProperty(ServiceProperties.ENABLE_FOR, ENABLE_FOR_NETWORK_AND_VIEW);
        props.setProperty(ACCELERATOR, "cmd g");
        props.setProperty(PREFERRED_MENU, "View.Arrange Network Windows[8]");
        props.setProperty(TITLE, "Grid");
        props.setProperty(MENU_GRAVITY, "1.0");
        registerService(bc, arrangeGridTaskFactory, TaskFactory.class, props);
    }
    {
        Properties props = new Properties();
        props.setProperty(ServiceProperties.ENABLE_FOR, ENABLE_FOR_NETWORK_AND_VIEW);
        props.setProperty(PREFERRED_MENU, "View.Arrange Network Windows[8]");
        props.setProperty(TITLE, "Cascade");
        props.setProperty(MENU_GRAVITY, "2.0");
        registerService(bc, arrangeCascadeTaskFactory, TaskFactory.class, props);
    }
    {
        Properties props = new Properties();
        props.setProperty(ServiceProperties.ENABLE_FOR, ENABLE_FOR_NETWORK_AND_VIEW);
        props.setProperty(PREFERRED_MENU, "View.Arrange Network Windows[8]");
        props.setProperty(TITLE, "Vertical Stack");
        props.setProperty(MENU_GRAVITY, "3.0");
        registerService(bc, arrangeHorizontalTaskFactory, TaskFactory.class, props);
    }
    {
        Properties props = new Properties();
        props.setProperty(ServiceProperties.ENABLE_FOR, ENABLE_FOR_NETWORK_AND_VIEW);
        props.setProperty(PREFERRED_MENU, "View.Arrange Network Windows[8]");
        props.setProperty(TITLE, "Side by Side");
        props.setProperty(MENU_GRAVITY, "4.0");
        registerService(bc, arrangeVerticalTaskFactory, TaskFactory.class, props);
    }
    {
        Properties props = new Properties();
        props.setProperty(IN_NETWORK_PANEL_CONTEXT_MENU, "true");
        registerAllServices(bc, createNetworkViewsAction, props);
    }
    {
        Properties props = new Properties();
        props.setProperty(IN_NETWORK_PANEL_CONTEXT_MENU, "true");
        registerAllServices(bc, destroyNetworkViewsAction, props);
    }
    {
        Properties props = new Properties();
        props.setProperty(IN_NETWORK_PANEL_CONTEXT_MENU, "true");
        registerAllServices(bc, destroyNetworksAction, props);
    }
    {
        Properties props = new Properties();
        props.setProperty(IN_NETWORK_PANEL_CONTEXT_MENU, "true");
        registerAllServices(bc, exportNetworkAction, props);
    }
    {
        Properties props = new Properties();
        props.setProperty(IN_NETWORK_PANEL_CONTEXT_MENU, "true");
        registerAllServices(bc, exportImageAction, props);
    }
    {
        TaskFactory pauseCommand = new PauseCommandTaskFactory(cytoscapeDesktop);
        Properties props = new Properties();
        props.setProperty(COMMAND_NAMESPACE, "command");
        props.setProperty(COMMAND_DESCRIPTION, "Display a message and pause until the user continues.");
        props.setProperty(COMMAND, "pause");
        props.setProperty(COMMAND_LONG_DESCRIPTION, "The **pause** command displays a dialog with the text provided in the *message* argument " + "and waits for the user to click **OK**");
        props.setProperty(COMMAND_SUPPORTS_JSON, "true");
        props.setProperty(COMMAND_EXAMPLE_JSON, "{}");
        registerService(bc, pauseCommand, TaskFactory.class, props);
    }
    registerAllServices(bc, cytoscapeDesktop);
    registerAllServices(bc, netMainPanel);
    registerAllServices(bc, commandToolPanel);
    registerAllServices(bc, netMediator);
    registerAllServices(bc, netViewMediator);
    registerService(bc, undoMonitor, SetCurrentNetworkViewListener.class);
    registerService(bc, undoMonitor, NetworkDestroyedListener.class);
    registerService(bc, undoMonitor, NetworkViewDestroyedListener.class);
    registerAllServices(bc, rowViewTracker);
    registerAllServices(bc, selecteEdgeViewUpdater);
    registerAllServices(bc, selecteNodeViewUpdater);
    registerAllServices(bc, rowsSetViewUpdater);
    registerAllServices(bc, sessionHandler);
    registerAllServices(bc, toolBarEnableUpdater);
    registerAllServices(bc, recentSessionManager);
    registerAllServices(bc, netSelectionMediator);
    registerAllServices(bc, netSearchMediator);
    registerServiceListener(bc, cytoscapeDesktop::addAction, cytoscapeDesktop::removeAction, CyAction.class);
    registerServiceListener(bc, preferenceAction::addCyProperty, preferenceAction::removeCyProperty, CyProperty.class);
    // registerServiceListener(bc, cy3preferenceAction::addCyProperty, cy3preferenceAction::removeCyProperty, CyProperty.class);
    registerServiceListener(bc, cytoscapeDesktop::addCytoPanelComponent, cytoscapeDesktop::removeCytoPanelComponent, CytoPanelComponent.class);
    registerServiceListener(bc, cytoscapeDesktop::addToolBarComponent, cytoscapeDesktop::removeToolBarComponent, ToolBarComponent.class);
    registerServiceListener(bc, cytoscapeMenuPopulator::addTaskFactory, cytoscapeMenuPopulator::removeTaskFactory, TaskFactory.class);
    registerServiceListener(bc, cytoscapeMenuPopulator::addNetworkTaskFactory, cytoscapeMenuPopulator::removeNetworkTaskFactory, NetworkTaskFactory.class);
    registerServiceListener(bc, cytoscapeMenuPopulator::addNetworkViewTaskFactory, cytoscapeMenuPopulator::removeNetworkViewTaskFactory, NetworkViewTaskFactory.class);
    registerServiceListener(bc, cytoscapeMenuPopulator::addNetworkCollectionTaskFactory, cytoscapeMenuPopulator::removeNetworkCollectionTaskFactory, NetworkCollectionTaskFactory.class);
    registerServiceListener(bc, cytoscapeMenuPopulator::addNetworkViewCollectionTaskFactory, cytoscapeMenuPopulator::removeNetworkViewCollectionTaskFactory, NetworkViewCollectionTaskFactory.class);
    registerServiceListener(bc, cytoscapeMenuPopulator::addTableTaskFactory, cytoscapeMenuPopulator::removeTableTaskFactory, TableTaskFactory.class);
    registerServiceListener(bc, layoutSettingsManager::addLayout, layoutSettingsManager::removeLayout, CyLayoutAlgorithm.class);
    registerServiceListener(bc, settingsAction::addLayout, settingsAction::removeLayout, CyLayoutAlgorithm.class);
    // For Network Panel context menu
    registerServiceListener(bc, netMediator::addNetworkViewTaskFactory, netMediator::removeNetworkViewTaskFactory, NetworkViewTaskFactory.class, CONTEXT_MENU_FILTER);
    registerServiceListener(bc, netMediator::addNetworkTaskFactory, netMediator::removeNetworkTaskFactory, NetworkTaskFactory.class, CONTEXT_MENU_FILTER);
    registerServiceListener(bc, netMediator::addNetworkViewCollectionTaskFactory, netMediator::removeNetworkViewCollectionTaskFactory, NetworkViewCollectionTaskFactory.class, CONTEXT_MENU_FILTER);
    registerServiceListener(bc, netMediator::addNetworkCollectionTaskFactory, netMediator::removeNetworkCollectionTaskFactory, NetworkCollectionTaskFactory.class, CONTEXT_MENU_FILTER);
    registerServiceListener(bc, netMediator::addCyAction, netMediator::removeCyAction, CyAction.class, CONTEXT_MENU_FILTER);
    registerServiceListener(bc, netSearchMediator::addNetworkSearchTaskFactory, netSearchMediator::removeNetworkSearchTaskFactory, NetworkSearchTaskFactory.class);
    registerServiceListener(bc, layoutMenuPopulator::addLayout, layoutMenuPopulator::removeLayout, CyLayoutAlgorithm.class);
    if (LookAndFeelUtil.isMac()) {
        try {
            new MacCyActivator().start(bc);
        } catch (Exception e) {
            logger.error("Cannot start MacCyActivator", e);
        }
    } else {
        Properties props = new Properties();
        props.setProperty(PREFERRED_MENU, "Help");
        props.setProperty(TITLE, "About");
        props.setProperty(MENU_GRAVITY, "10.0");
        registerService(bc, helpAboutTaskFactory, TaskFactory.class, props);
        registerService(bc, exitAction, CyAction.class);
    }
    // Full screen actions.  This is platform dependent
    FullScreenAction fullScreenAction = null;
    if (LookAndFeelUtil.isMac() && MacFullScreenEnabler.supportsNativeFullScreenMode())
        fullScreenAction = new FullScreenMacAction(cytoscapeDesktop);
    else
        fullScreenAction = new FullScreenAction(cytoscapeDesktop);
    registerService(bc, fullScreenAction, CyAction.class);
}

Example 43 with CyServiceRegistrar

use of org.cytoscape.service.util.CyServiceRegistrar in project cytoscape-impl by cytoscape.

the class CyActivator method start.

@Override
public void start(BundleContext bc) {
    CyServiceRegistrar serviceRegistrar = getService(bc, CyServiceRegistrar.class);
    PopupMenuHelper popupMenuHelper = new PopupMenuHelper(serviceRegistrar);
    AbstractTableBrowser nodeTableBrowser = new DefaultTableBrowser("Node Table", CyNode.class, serviceRegistrar, popupMenuHelper);
    AbstractTableBrowser edgeTableBrowser = new DefaultTableBrowser("Edge Table", CyEdge.class, serviceRegistrar, popupMenuHelper);
    AbstractTableBrowser networkTableBrowser = new DefaultTableBrowser("Network Table", CyNetwork.class, serviceRegistrar, popupMenuHelper);
    AbstractTableBrowser globalTableBrowser = new GlobalTableBrowser("Unassigned Tables", serviceRegistrar, popupMenuHelper);
    registerAllServices(bc, nodeTableBrowser, new Properties());
    registerAllServices(bc, edgeTableBrowser, new Properties());
    registerAllServices(bc, networkTableBrowser, new Properties());
    final Properties globalTableProp = new Properties();
    registerService(bc, globalTableBrowser, ActionListener.class, globalTableProp);
    registerService(bc, globalTableBrowser, SessionLoadedListener.class, globalTableProp);
    registerService(bc, globalTableBrowser, SessionAboutToBeSavedListener.class, globalTableProp);
    registerService(bc, globalTableBrowser, TableAboutToBeDeletedListener.class, globalTableProp);
    registerService(bc, globalTableBrowser, TableAddedListener.class, globalTableProp);
    registerService(bc, globalTableBrowser, TablePrivacyChangedListener.class, globalTableProp);
    registerService(bc, globalTableBrowser, RowsSetListener.class, globalTableProp);
    registerService(bc, globalTableBrowser, RowsDeletedListener.class, globalTableProp);
    registerServiceListener(bc, popupMenuHelper::addTableColumnTaskFactory, popupMenuHelper::removeTableColumnTaskFactory, TableColumnTaskFactory.class);
    registerServiceListener(bc, popupMenuHelper::addTableCellTaskFactory, popupMenuHelper::removeTableCellTaskFactory, TableCellTaskFactory.class);
    {
        ClearAllErrorsTaskFactory taskFactory = new ClearAllErrorsTaskFactory(serviceRegistrar);
        Properties props = new Properties();
        props.setProperty(TITLE, "Clear all errors");
        registerService(bc, taskFactory, TableColumnTaskFactory.class, props);
    }
    {
        SetColumnFormatTaskFactory taskFactory = new SetColumnFormatTaskFactory(serviceRegistrar);
        Properties props = new Properties();
        props.setProperty(TITLE, "Format column...");
        registerService(bc, taskFactory, TableColumnTaskFactory.class, props);
    }
}

Example 44 with CyServiceRegistrar

use of org.cytoscape.service.util.CyServiceRegistrar in project cytoscape-impl by cytoscape.

the class CyActivator method start.

@Override
public void start(BundleContext bc) {
    final CyServiceRegistrar serviceRegistrar = getService(bc, CyServiceRegistrar.class);
    Bundle rootBundle = bc.getBundle(0);
    ShutdownHandler cytoscapeShutdown = new ShutdownHandler(rootBundle, serviceRegistrar);
    CyVersionImpl cytoscapeVersion = new CyVersionImpl(serviceRegistrar);
    CyApplicationConfigurationImpl cyApplicationConfiguration = new CyApplicationConfigurationImpl(cytoscapeVersion.getVersion());
    CyApplicationManagerImpl cyApplicationManager = new CyApplicationManagerImpl(serviceRegistrar);
    registerAllServices(bc, cyApplicationManager, new Properties());
    registerAllServices(bc, cytoscapeShutdown, new Properties());
    registerAllServices(bc, cytoscapeVersion, new Properties());
    registerAllServices(bc, cyApplicationConfiguration, new Properties());
    registerServiceListener(bc, cyApplicationManager::addNetworkViewRenderer, cyApplicationManager::removeNetworkViewRenderer, NetworkViewRenderer.class);
    DefaultNetworkViewFactory viewFactory = new DefaultNetworkViewFactory(cyApplicationManager);
    Properties viewFactoryProperties = new Properties();
    viewFactoryProperties.put(Constants.SERVICE_RANKING, Integer.MAX_VALUE);
    registerService(bc, viewFactory, CyNetworkViewFactory.class, viewFactoryProperties);
    // For telemetry
    final CyProperty<Properties> cyPropertyServiceRef = getService(bc, CyProperty.class, "(cyPropertyName=cytoscape3.props)");
    checkIsntallOptions(cyApplicationConfiguration, cyPropertyServiceRef);
}

Example 45 with CyServiceRegistrar

use of org.cytoscape.service.util.CyServiceRegistrar in project cytoscape-impl by cytoscape.

the class NewNetworkSelectedNodesOnlyTaskFactoryTest method testObserver.

@Test
public void testObserver() throws Exception {
    NetworkViewTestSupport viewSupport = new NetworkViewTestSupport();
    NetworkTestSupport networkSupport = new NetworkTestSupport();
    CyNetworkFactory networkFactory = networkSupport.getNetworkFactory();
    UndoSupport undoSupport = mock(UndoSupport.class);
    CyRootNetworkManager crnf = new CyRootNetworkManagerImpl();
    CyNetworkViewFactory cnvf = viewSupport.getNetworkViewFactory();
    CyNetworkManager netmgr = mock(CyNetworkManager.class);
    CyNetworkViewManager networkViewManager = mock(CyNetworkViewManager.class);
    CyNetworkNaming naming = mock(CyNetworkNaming.class);
    VisualMappingManager vmm = mock(VisualMappingManager.class);
    CyApplicationManager appManager = mock(CyApplicationManager.class);
    CyEventHelper eventHelper = mock(CyEventHelper.class);
    CyGroupManager groupMgr = mock(CyGroupManager.class);
    RenderingEngineManager renderingEngineMgr = mock(RenderingEngineManager.class);
    CyLayoutAlgorithm defLayout = mock(CyLayoutAlgorithm.class);
    CyLayoutAlgorithmManager layoutMgr = mock(CyLayoutAlgorithmManager.class);
    when(layoutMgr.getDefaultLayout()).thenReturn(defLayout);
    CyServiceRegistrar serviceRegistrar = mock(CyServiceRegistrar.class);
    when(serviceRegistrar.getService(CyLayoutAlgorithmManager.class)).thenReturn(layoutMgr);
    NewNetworkSelectedNodesOnlyTaskFactoryImpl factory = new NewNetworkSelectedNodesOnlyTaskFactoryImpl(undoSupport, crnf, cnvf, netmgr, networkViewManager, naming, vmm, appManager, eventHelper, groupMgr, renderingEngineMgr, serviceRegistrar);
    CyNetwork network = networkFactory.createNetwork();
    CyNode node = network.addNode();
    network.getRow(node).set(CyNetwork.SELECTED, true);
    TaskObserver observer = mock(TaskObserver.class);
    TaskMonitor taskMonitor = mock(TaskMonitor.class);
    TaskIterator iterator = factory.createTaskIterator(network);
    while (iterator.hasNext()) {
        Task t = iterator.next();
        t.run(taskMonitor);
        if (t instanceof ObservableTask)
            observer.taskFinished((ObservableTask) t);
    }
    verify(observer, times(1)).taskFinished(any(ObservableTask.class));
}