Examples with CyServiceRegistrar org.cytoscape.service.util.CyServiceRegistrar used on opensource projects

Example 21 with CyServiceRegistrar

use of org.cytoscape.service.util.CyServiceRegistrar in project cytoscape-impl by cytoscape.

the class CyActivator method start.

@Override
public void start(BundleContext bc) {
    final CyServiceRegistrar serviceRegistrar = getService(bc, CyServiceRegistrar.class);
    // Mapping Factories:
    final DiscreteMappingFactory dmFactory = new DiscreteMappingFactory(serviceRegistrar);
    {
        final Properties props = new Properties();
        props.setProperty("service.type", "factory");
        props.setProperty("mapping.type", "discrete");
        registerService(bc, dmFactory, VisualMappingFunctionFactory.class, props);
    }
    final ContinuousMappingFactory cmFactory = new ContinuousMappingFactory(serviceRegistrar);
    {
        final Properties props = new Properties();
        props.setProperty("service.type", "factory");
        props.setProperty("mapping.type", "continuous");
        registerService(bc, cmFactory, VisualMappingFunctionFactory.class, props);
    }
    final PassthroughMappingFactory pmFactory = new PassthroughMappingFactory(serviceRegistrar);
    {
        final Properties props = new Properties();
        props.setProperty("service.type", "factory");
        props.setProperty("mapping.type", "passthrough");
        registerService(bc, pmFactory, VisualMappingFunctionFactory.class, props);
        registerServiceListener(bc, pmFactory::addValueTranslator, pmFactory::removeValueTranslator, ValueTranslator.class);
    }
    final VisualStyleFactoryImpl visualStyleFactory = new VisualStyleFactoryImpl(serviceRegistrar, pmFactory);
    registerService(bc, visualStyleFactory, VisualStyleFactory.class);
    final VisualMappingManagerImpl visualMappingManager = new VisualMappingManagerImpl(visualStyleFactory, serviceRegistrar);
    registerAllServices(bc, visualMappingManager);
}

Example 22 with CyServiceRegistrar

use of org.cytoscape.service.util.CyServiceRegistrar in project cytoscape-impl by cytoscape.

the class CyActivator method start.

@Override
public void start(BundleContext bc) {
    CyServiceRegistrar serviceRegistrar = getService(bc, CyServiceRegistrar.class);
    // UI for Network Import Clients
    WebServiceImportDialog<NetworkImportWebServiceClient> unifiedNetworkImportDialog = new WebServiceImportDialog<NetworkImportWebServiceClient>(NetworkImportWebServiceClient.class, "Import Network from Public Databases", serviceRegistrar);
    // UI for Table Import Clients
    WebServiceImportDialog<TableImportWebServiceClient> unifiedTableImportDialog = new WebServiceImportDialog<TableImportWebServiceClient>(TableImportWebServiceClient.class, "Import Table from Public Databases", serviceRegistrar);
    WebServiceGUIImpl webServiceGui = new WebServiceGUIImpl();
    webServiceGui.addClient(NetworkImportWebServiceClient.class, unifiedNetworkImportDialog);
    webServiceGui.addClient(TableImportWebServiceClient.class, unifiedTableImportDialog);
    // ALT (for Mac, it's Option)
    final KeyStroke networkImportShortcut = KeyStroke.getKeyStroke(KeyEvent.VK_L, InputEvent.ALT_DOWN_MASK);
    final KeyStroke tableImportShortcut = KeyStroke.getKeyStroke(KeyEvent.VK_T, InputEvent.ALT_DOWN_MASK);
    ShowImportDialogAction showImportNetworkFromWebServiceDialogAction = new ShowImportDialogAction(unifiedNetworkImportDialog, "File.Import.Network", 3.0f, "Public Databases...", networkImportShortcut, "Import Network from Database...", serviceRegistrar);
    ShowImportDialogAction showImportTableFromWebServiceDialogAction = new ShowImportDialogAction(unifiedTableImportDialog, "File.Import.Table", 3.0f, "Public Databases...", tableImportShortcut, serviceRegistrar);
    {
        Properties props = new Properties();
        props.setProperty("id", "showImportNetworkFromWebServiceDialogAction");
        registerService(bc, showImportNetworkFromWebServiceDialogAction, CyAction.class, props);
    }
    registerService(bc, showImportTableFromWebServiceDialogAction, CyAction.class, new Properties());
    registerService(bc, webServiceGui, WebServiceGUI.class, new Properties());
    registerServiceListener(bc, unifiedNetworkImportDialog::addClient, unifiedNetworkImportDialog::removeClient, WebServiceClient.class);
    registerServiceListener(bc, unifiedTableImportDialog::addClient, unifiedTableImportDialog::removeClient, WebServiceClient.class);
}

Example 23 with CyServiceRegistrar

use of org.cytoscape.service.util.CyServiceRegistrar in project cytoscape-impl by cytoscape.

the class CyActivator method start.

@Override
public void start(BundleContext bc) {
    final CyServiceRegistrar serviceRegistrar = getService(bc, CyServiceRegistrar.class);
    {
        // NetworkView (empty space) context menus
        SIFInterpreterTaskFactory factory = new SIFInterpreterTaskFactory(serviceRegistrar);
        Properties props = new Properties();
        props.setProperty(ENABLE_FOR, "networkAndView");
        props.setProperty(PREFERRED_ACTION, "NEW");
        props.setProperty(PREFERRED_MENU, NETWORK_ADD_MENU);
        props.setProperty(MENU_GRAVITY, "1.0");
        props.setProperty(IN_MENU_BAR, "false");
        props.setProperty(TITLE, "Edge (and possibly Nodes) using SIF...");
        registerService(bc, factory, NetworkViewTaskFactory.class, props);
    }
    {
        NetworkViewLocationTaskFactory factory = new AddNodeTaskFactory(serviceRegistrar);
        Properties props = new Properties();
        props.setProperty(PREFERRED_ACTION, "NEW");
        props.setProperty(PREFERRED_MENU, NETWORK_ADD_MENU);
        props.setProperty(MENU_GRAVITY, "1.1");
        props.setProperty(TITLE, "Node");
        registerService(bc, factory, NetworkViewLocationTaskFactory.class, props);
    }
    // We need a place to hold the objects themselves
    ClipboardManagerImpl clipboardManager = new ClipboardManagerImpl(serviceRegistrar);
    {
        // Copy node
        NetworkViewTaskFactory factory = new CopyTaskFactory(clipboardManager);
        Properties props = new Properties();
        props.setProperty(ENABLE_FOR, "networkAndView");
        props.setProperty(PREFERRED_ACTION, "NEW");
        props.setProperty(PREFERRED_MENU, NETWORK_EDIT_MENU);
        props.setProperty(ACCELERATOR, "cmd c");
        props.setProperty(TITLE, "Copy");
        props.setProperty(MENU_GRAVITY, "0.0f");
        registerService(bc, factory, NetworkViewTaskFactory.class, props);
    }
    {
        // Cut node
        NetworkViewTaskFactory factory = new CutTaskFactory(clipboardManager, serviceRegistrar);
        Properties props = new Properties();
        props.setProperty(ENABLE_FOR, "networkAndView");
        props.setProperty(PREFERRED_ACTION, "NEW");
        props.setProperty(PREFERRED_MENU, NETWORK_EDIT_MENU);
        props.setProperty(ACCELERATOR, "cmd x");
        props.setProperty(MENU_GRAVITY, "0.1f");
        props.setProperty(TITLE, "Cut");
        registerService(bc, factory, NetworkViewTaskFactory.class, props);
    }
    {
        // Paste node
        NetworkViewLocationTaskFactory pasteTaskFactory = new PasteTaskFactory(clipboardManager, serviceRegistrar);
        Properties props = new Properties();
        props.setProperty(ENABLE_FOR, "networkAndView");
        props.setProperty(PREFERRED_ACTION, "NEW");
        props.setProperty(PREFERRED_MENU, NETWORK_EDIT_MENU);
        props.setProperty(TITLE, "Paste");
        props.setProperty(MENU_GRAVITY, "0.2f");
        props.setProperty(ACCELERATOR, "cmd v");
        props.setProperty(IN_MENU_BAR, "true");
        registerService(bc, pasteTaskFactory, NetworkViewLocationTaskFactory.class, props);
    }
    // At some point, add Paste Special.  Paste special would allow paste node only, paste copy, etc.
    // NodeView context menus
    {
        // Copy node
        NodeViewTaskFactory factory = new CopyNodeTaskFactory(clipboardManager);
        Properties props = new Properties();
        props.setProperty(PREFERRED_ACTION, "NEW");
        props.setProperty(PREFERRED_MENU, NODE_EDIT_MENU);
        props.setProperty(ACCELERATOR, "cmd c");
        props.setProperty(MENU_GRAVITY, "0.0f");
        props.setProperty(TITLE, "Copy");
        registerService(bc, factory, NodeViewTaskFactory.class, props);
    }
    {
        // Cut node
        NodeViewTaskFactory factory = new CutNodeTaskFactory(clipboardManager, serviceRegistrar);
        Properties props = new Properties();
        props.setProperty(PREFERRED_ACTION, "NEW");
        props.setProperty(PREFERRED_MENU, NODE_EDIT_MENU);
        props.setProperty(ACCELERATOR, "cmd x");
        props.setProperty(MENU_GRAVITY, "0.1f");
        props.setProperty(TITLE, "Cut");
        registerService(bc, factory, NodeViewTaskFactory.class, props);
    }
    {
        // Rename node
        NodeViewTaskFactory factory = new RenameNodeTaskFactory(serviceRegistrar);
        Properties props = new Properties();
        props.setProperty(PREFERRED_ACTION, "NEW");
        props.setProperty(PREFERRED_MENU, NODE_EDIT_MENU);
        props.setProperty(INSERT_SEPARATOR_AFTER, "true");
        props.setProperty(MENU_GRAVITY, "0.2f");
        props.setProperty(TITLE, "Rename Node");
        registerService(bc, factory, NodeViewTaskFactory.class, props);
    }
    {
        NodeViewTaskFactory factory = new AddNestedNetworkTaskFactory(serviceRegistrar);
        Properties props = new Properties();
        props.setProperty(PREFERRED_ACTION, "NEW");
        props.setProperty(PREFERRED_MENU, NODE_NESTED_NETWORKS_MENU);
        props.setProperty(MENU_GRAVITY, "0.1f");
        props.setProperty(TITLE, "Add Nested Network");
        registerService(bc, factory, NodeViewTaskFactory.class, props);
    }
    {
        NodeViewTaskFactory factory = new DeleteNestedNetworkTaskFactory(serviceRegistrar);
        Properties props = new Properties();
        props.setProperty(PREFERRED_ACTION, "NEW");
        props.setProperty(PREFERRED_MENU, NODE_NESTED_NETWORKS_MENU);
        props.setProperty(MENU_GRAVITY, "0.2f");
        props.setProperty(TITLE, "Remove Nested Network");
        registerService(bc, factory, NodeViewTaskFactory.class, props);
    }
    {
        NodeViewTaskFactory factory = new GoToNestedNetworkTaskFactory(serviceRegistrar);
        Properties props = new Properties();
        props.setProperty(PREFERRED_ACTION, "NEW");
        props.setProperty(PREFERRED_MENU, NODE_NESTED_NETWORKS_MENU);
        props.setProperty(MENU_GRAVITY, "0.3f");
        props.setProperty(TITLE, "Go to Nested Network");
        registerService(bc, factory, NodeViewTaskFactory.class, props);
    }
    // EdgeView context menus
    {
        // Copy node
        EdgeViewTaskFactory factory = new CopyEdgeTaskFactory(clipboardManager);
        Properties props = new Properties();
        props.setProperty(PREFERRED_ACTION, "NEW");
        props.setProperty(PREFERRED_MENU, EDGE_EDIT_MENU);
        props.setProperty(ACCELERATOR, "cmd c");
        props.setProperty(MENU_GRAVITY, "0.0f");
        props.setProperty(TITLE, "Copy");
        registerService(bc, factory, EdgeViewTaskFactory.class, props);
    }
    {
        // Cut edge
        EdgeViewTaskFactory factory = new CutEdgeTaskFactory(clipboardManager, serviceRegistrar);
        Properties props = new Properties();
        props.setProperty(PREFERRED_ACTION, "NEW");
        props.setProperty(PREFERRED_MENU, EDGE_EDIT_MENU);
        props.setProperty(ACCELERATOR, "cmd x");
        props.setProperty(MENU_GRAVITY, "0.1f");
        props.setProperty(TITLE, "Cut");
        registerService(bc, factory, EdgeViewTaskFactory.class, props);
    }
}

Example 24 with CyServiceRegistrar

use of org.cytoscape.service.util.CyServiceRegistrar in project cytoscape-impl by cytoscape.

the class Cy3SessionReaderImplTest method setUp.

@Before
public void setUp() {
    InputStream is = mock(InputStream.class);
    GroupUtil groupUtil = mock(GroupUtil.class);
    SUIDUpdater suidUpdater = mock(SUIDUpdater.class);
    CyNetworkReaderManager netReaderMgr = mock(CyNetworkReaderManager.class);
    CyPropertyReaderManager propReaderMgr = mock(CyPropertyReaderManager.class);
    VizmapReaderManager vizmapReaderMgr = mock(VizmapReaderManager.class);
    CSVCyReaderFactory csvCyReaderFactory = mock(CSVCyReaderFactory.class);
    CyNetworkTableManager netTblMgr = mock(CyNetworkTableManager.class);
    CyRootNetworkManager rootNetMgr = mock(CyRootNetworkManager.class);
    EquationCompiler compiler = mock(EquationCompiler.class);
    CyServiceRegistrar serviceRegistrar = mock(CyServiceRegistrar.class);
    when(serviceRegistrar.getService(CyNetworkTableManager.class)).thenReturn(netTblMgr);
    when(serviceRegistrar.getService(CyRootNetworkManager.class)).thenReturn(rootNetMgr);
    when(serviceRegistrar.getService(EquationCompiler.class)).thenReturn(compiler);
    ReadCache cache = new ReadCache(serviceRegistrar);
    reader = new Cy3SessionReaderImpl(is, cache, groupUtil, suidUpdater, netReaderMgr, propReaderMgr, vizmapReaderMgr, csvCyReaderFactory, serviceRegistrar);
    tblTestSupport = new TableTestSupport();
}

Example 25 with CyServiceRegistrar

use of org.cytoscape.service.util.CyServiceRegistrar in project cytoscape-impl by cytoscape.

the class GenericXGMMLFileFilterTest method setUp.

@Before
public void setUp() {
    Set<String> extensions = new HashSet<String>();
    Set<String> contentTypes = new HashSet<String>();
    String description = "XGMML";
    Properties props = new Properties();
    CyProperty<Properties> cyProperties = new SimpleCyProperty<Properties>("test", props, Properties.class, SavePolicy.DO_NOT_SAVE);
    CyServiceRegistrar serviceRegistrar = mock(CyServiceRegistrar.class);
    when(serviceRegistrar.getService(CyProperty.class, "(cyPropertyName=cytoscape3.props)")).thenReturn(cyProperties);
    filter = new GenericXGMMLFileFilter(extensions, contentTypes, description, DataCategory.NETWORK, new StreamUtilImpl(serviceRegistrar));
}