Examples with CyServiceRegistrar org.cytoscape.service.util.CyServiceRegistrar used on opensource projects

Example 6 with CyServiceRegistrar

use of org.cytoscape.service.util.CyServiceRegistrar in project cytoscape-impl by cytoscape.

the class NewNetworkSelectedNodesEdgesTaskFactoryTest method testObserver.

@Test
public void testObserver() throws Exception {
    NetworkViewTestSupport viewSupport = new NetworkViewTestSupport();
    NetworkTestSupport networkSupport = new NetworkTestSupport();
    CyNetworkFactory networkFactory = networkSupport.getNetworkFactory();
    UndoSupport undoSupport = mock(UndoSupport.class);
    CyRootNetworkManager crnf = new CyRootNetworkManagerImpl();
    CyNetworkViewFactory cnvf = viewSupport.getNetworkViewFactory();
    CyNetworkManager netmgr = mock(CyNetworkManager.class);
    CyNetworkViewManager networkViewManager = mock(CyNetworkViewManager.class);
    CyNetworkNaming naming = mock(CyNetworkNaming.class);
    VisualMappingManager vmm = mock(VisualMappingManager.class);
    CyApplicationManager appManager = mock(CyApplicationManager.class);
    CyEventHelper eventHelper = mock(CyEventHelper.class);
    CyGroupManager groupMgr = mock(CyGroupManager.class);
    RenderingEngineManager renderingEngineMgr = mock(RenderingEngineManager.class);
    CyLayoutAlgorithm defLayout = mock(CyLayoutAlgorithm.class);
    CyLayoutAlgorithmManager layoutMgr = mock(CyLayoutAlgorithmManager.class);
    when(layoutMgr.getDefaultLayout()).thenReturn(defLayout);
    CyServiceRegistrar serviceRegistrar = mock(CyServiceRegistrar.class);
    when(serviceRegistrar.getService(CyLayoutAlgorithmManager.class)).thenReturn(layoutMgr);
    NewNetworkSelectedNodesEdgesTaskFactoryImpl factory = new NewNetworkSelectedNodesEdgesTaskFactoryImpl(undoSupport, crnf, cnvf, netmgr, networkViewManager, naming, vmm, appManager, eventHelper, groupMgr, renderingEngineMgr, serviceRegistrar);
    CyNetwork network = networkFactory.createNetwork();
    CyNode node = network.addNode();
    network.getRow(node).set(CyNetwork.SELECTED, true);
    TaskObserver observer = mock(TaskObserver.class);
    TaskMonitor taskMonitor = mock(TaskMonitor.class);
    TaskIterator iterator = factory.createTaskIterator(network);
    while (iterator.hasNext()) {
        Task t = iterator.next();
        t.run(taskMonitor);
        if (t instanceof ObservableTask)
            observer.taskFinished((ObservableTask) t);
    }
    verify(observer, times(1)).taskFinished(any(ObservableTask.class));
}

Example 7 with CyServiceRegistrar

use of org.cytoscape.service.util.CyServiceRegistrar in project cytoscape-impl by cytoscape.

the class ViewWriterTest method setUp.

@Before
@SuppressWarnings("rawtypes")
public void setUp() throws Exception {
    final PresentationWriterManager viewWriterMgr = mock(PresentationWriterManager.class);
    final CyApplicationManager applicationManager = mock(CyApplicationManager.class);
    final RenderingEngineManager engineManager = mock(RenderingEngineManager.class);
    final CyNetworkView view = mock(CyNetworkView.class);
    final CyNetwork network = mock(CyNetwork.class);
    final CyRow row = mock(CyRow.class);
    final RenderingEngine re = mock(RenderingEngine.class);
    final CyServiceRegistrar serviceRegistrar = mock(CyServiceRegistrar.class);
    when(serviceRegistrar.getService(CyApplicationManager.class)).thenReturn(applicationManager);
    when(serviceRegistrar.getService(RenderingEngineManager.class)).thenReturn(engineManager);
    when(serviceRegistrar.getService(PresentationWriterManager.class)).thenReturn(viewWriterMgr);
    fileFilter = mock(CyFileFilter.class);
    when(fileFilter.getDescription()).thenReturn("A dummy filter");
    when(fileFilter.getExtensions()).thenReturn(Collections.singleton("dummy"));
    final List<CyFileFilter> filters = new ArrayList<>();
    filters.add(fileFilter);
    when(viewWriterMgr.getAvailableWriterFilters()).thenReturn(filters);
    when(view.getModel()).thenReturn(network);
    when(network.getRow(network)).thenReturn(row);
    cyWriter = new ViewWriter(view, re, serviceRegistrar);
    final CyWriter aWriter = mock(CyWriter.class);
    when(viewWriterMgr.getWriter(eq(view), eq(re), eq(fileFilter), argThat(new AnyOutputStreamMatcher()))).thenReturn(aWriter);
}

Example 8 with CyServiceRegistrar

use of org.cytoscape.service.util.CyServiceRegistrar in project cytoscape-impl by cytoscape.

the class UnHideAllEdgesTaskFactoryTest method testRun.

@Test
public void testRun() throws Exception {
    UndoSupport undoSupport = mock(UndoSupport.class);
    CyEventHelper eventHelper = mock(CyEventHelper.class);
    VisualMappingManager vmMgr = mock(VisualMappingManager.class);
    CyServiceRegistrar serviceRegistrar = mock(CyServiceRegistrar.class);
    when(serviceRegistrar.getService(UndoSupport.class)).thenReturn(undoSupport);
    when(serviceRegistrar.getService(CyEventHelper.class)).thenReturn(eventHelper);
    when(serviceRegistrar.getService(VisualMappingManager.class)).thenReturn(vmMgr);
    UnHideAllEdgesTaskFactoryImpl factory = new UnHideAllEdgesTaskFactoryImpl(serviceRegistrar);
    CyNetworkView view = mock(CyNetworkView.class);
    TaskIterator ti = factory.createTaskIterator(view);
    assertNotNull(ti);
    assertTrue(ti.hasNext());
    Task t = ti.next();
    assertNotNull(t);
}

Example 9 with CyServiceRegistrar

use of org.cytoscape.service.util.CyServiceRegistrar in project cytoscape-impl by cytoscape.

the class CyActivator method start.

@Override
public void start(BundleContext bc) {
    CyServiceRegistrar serviceRegistrar = getService(bc, CyServiceRegistrar.class);
    CyNetworkNamingImpl networkNaming = new CyNetworkNamingImpl(serviceRegistrar);
    registerService(bc, networkNaming, CyNetworkNaming.class, new Properties());
    CySessionManagerImpl cySessionManager = new CySessionManagerImpl(serviceRegistrar);
    registerAllServices(bc, cySessionManager, new Properties());
    registerServiceListener(bc, cySessionManager::addCyProperty, cySessionManager::removeCyProperty, CyProperty.class);
}

Example 10 with CyServiceRegistrar

use of org.cytoscape.service.util.CyServiceRegistrar in project cytoscape-impl by cytoscape.

the class CyActivator method start.

@Override
public void start(BundleContext bc) {
    final CyServiceRegistrar serviceRegistrar = getService(bc, CyServiceRegistrar.class);
    RenderingEngineManagerImpl renderingEngineManager = new RenderingEngineManagerImpl(serviceRegistrar);
    Properties renderingEngineManagerProps = new Properties();
    renderingEngineManagerProps.setProperty("service.type", "manager");
    registerAllServices(bc, renderingEngineManager, renderingEngineManagerProps);
    registerServiceListener(bc, renderingEngineManager::addRenderingEngineFactory, renderingEngineManager::removeRenderingEngineFactory, RenderingEngineFactory.class);
    CyColumnIdentifierFactory cyColumnIdentifierFactory = new CyColumnIdentifierFactoryImpl();
    registerAllServices(bc, cyColumnIdentifierFactory, new Properties());
}