Examples with CyServiceRegistrar org.cytoscape.service.util.CyServiceRegistrar used on opensource projects

Example 16 with CyServiceRegistrar

use of org.cytoscape.service.util.CyServiceRegistrar in project cytoscape-impl by cytoscape.

the class CyActivator method start.

@Override
public void start(BundleContext bc) {
    final CyServiceRegistrar serviceRegistrar = getService(bc, CyServiceRegistrar.class);
    {
        UndoSupportImpl undoSupport = new UndoSupportImpl();
        Properties props = new Properties();
        registerService(bc, undoSupport, UndoSupport.class, props);
        registerService(bc, undoSupport, SwingUndoSupport.class, props);
    }
    JDialogTunableMutator jDialogTunableMutator = new JDialogTunableMutator();
    JPanelTunableMutator jPanelTunableMutator = new JPanelTunableMutator();
    final TaskStatusBar taskStatusBar = new TaskStatusBar(serviceRegistrar);
    final TaskHistory taskHistory = new TaskHistory();
    taskStatusBar.addPropertyChangeListener(TaskStatusBar.TASK_HISTORY_CLICK, new PropertyChangeListener() {

        TaskHistoryWindow window = null;

        // don't need to wrap this method in a SwingUtilities.invokeLater -- it will only be called on the EDT anyway
        @Override
        public void propertyChange(PropertyChangeEvent e) {
            if (window == null)
                window = new TaskHistoryWindow(taskHistory);
            window.open();
        }
    });
    {
        Properties props = new Properties();
        props.setProperty("type", "TaskStatus");
        registerService(bc, taskStatusBar, StatusBarPanelFactory.class, props);
    }
    registerService(bc, new CyUserLogAppender(taskStatusBar, taskHistory), PaxAppender.class, ezProps("org.ops4j.pax.logging.appender.name", "CyUserLog"));
    JDialogTaskManager jDialogTaskManager = new JDialogTaskManager(jDialogTunableMutator, taskStatusBar, taskHistory, serviceRegistrar);
    PanelTaskManager jPanelTaskManager = new JPanelTaskManager(jPanelTunableMutator, jDialogTaskManager);
    SupportedFileTypesManager supportedFileTypesManager = new SupportedFileTypesManager();
    SimpleGUITunableHandlerFactory<BooleanHandler> booleanHandlerFactory = new SimpleGUITunableHandlerFactory<>(BooleanHandler.class, Boolean.class, boolean.class);
    SimpleGUITunableHandlerFactory<IntegerHandler> integerHandlerFactory = new SimpleGUITunableHandlerFactory<>(IntegerHandler.class, Integer.class, int.class);
    SimpleGUITunableHandlerFactory<FloatHandler> floatHandlerFactory = new SimpleGUITunableHandlerFactory<>(FloatHandler.class, Float.class, float.class);
    SimpleGUITunableHandlerFactory<DoubleHandler> doubleHandlerFactory = new SimpleGUITunableHandlerFactory<>(DoubleHandler.class, Double.class, double.class);
    SimpleGUITunableHandlerFactory<LongHandler> longHandlerFactory = new SimpleGUITunableHandlerFactory<>(LongHandler.class, Long.class, long.class);
    SimpleGUITunableHandlerFactory<StringHandler> stringHandlerFactory = new SimpleGUITunableHandlerFactory<>(StringHandler.class, String.class);
    SimpleGUITunableHandlerFactory<BoundedHandler> boundedIntegerHandlerFactory = new SimpleGUITunableHandlerFactory<>(BoundedHandler.class, BoundedInteger.class);
    SimpleGUITunableHandlerFactory<BoundedHandler> boundedFloatHandlerFactory = new SimpleGUITunableHandlerFactory<>(BoundedHandler.class, BoundedFloat.class);
    SimpleGUITunableHandlerFactory<BoundedHandler> boundedDoubleHandlerFactory = new SimpleGUITunableHandlerFactory<>(BoundedHandler.class, BoundedDouble.class);
    SimpleGUITunableHandlerFactory<BoundedHandler> boundedLongHandlerFactory = new SimpleGUITunableHandlerFactory<>(BoundedHandler.class, BoundedLong.class);
    SimpleGUITunableHandlerFactory<ListSingleHandler> listSingleSelectionHandlerFactory = new SimpleGUITunableHandlerFactory<>(ListSingleHandler.class, ListSingleSelection.class);
    SimpleGUITunableHandlerFactory<ListMultipleHandler> listMultipleSelectionHandlerFactory = new SimpleGUITunableHandlerFactory<>(ListMultipleHandler.class, ListMultipleSelection.class);
    SimpleGUITunableHandlerFactory<UserActionHandler> userActionHandlerFactory = new SimpleGUITunableHandlerFactory<>(UserActionHandler.class, UserAction.class);
    URLHandlerFactory urlHandlerFactory = new URLHandlerFactory(serviceRegistrar);
    registerService(bc, urlHandlerFactory, GUITunableHandlerFactory.class);
    FileHandlerFactory fileHandlerFactory = new FileHandlerFactory(supportedFileTypesManager, serviceRegistrar);
    registerService(bc, fileHandlerFactory, GUITunableHandlerFactory.class);
    registerService(bc, jDialogTaskManager, DialogTaskManager.class);
    registerService(bc, jDialogTaskManager, TaskManager.class);
    registerService(bc, jPanelTaskManager, PanelTaskManager.class);
    registerService(bc, integerHandlerFactory, GUITunableHandlerFactory.class);
    registerService(bc, floatHandlerFactory, GUITunableHandlerFactory.class);
    registerService(bc, doubleHandlerFactory, GUITunableHandlerFactory.class);
    registerService(bc, longHandlerFactory, GUITunableHandlerFactory.class);
    registerService(bc, booleanHandlerFactory, GUITunableHandlerFactory.class);
    registerService(bc, stringHandlerFactory, GUITunableHandlerFactory.class);
    registerService(bc, boundedIntegerHandlerFactory, GUITunableHandlerFactory.class);
    registerService(bc, boundedFloatHandlerFactory, GUITunableHandlerFactory.class);
    registerService(bc, boundedDoubleHandlerFactory, GUITunableHandlerFactory.class);
    registerService(bc, boundedLongHandlerFactory, GUITunableHandlerFactory.class);
    registerService(bc, listSingleSelectionHandlerFactory, GUITunableHandlerFactory.class);
    registerService(bc, listMultipleSelectionHandlerFactory, GUITunableHandlerFactory.class);
    registerService(bc, userActionHandlerFactory, GUITunableHandlerFactory.class);
    registerServiceListener(bc, supportedFileTypesManager::addInputStreamTaskFactory, supportedFileTypesManager::removeInputStreamTaskFactory, InputStreamTaskFactory.class);
    registerServiceListener(bc, supportedFileTypesManager::addCyWriterTaskFactory, supportedFileTypesManager::removeCyWriterTaskFactory, CyWriterFactory.class);
    registerServiceListener(bc, jDialogTaskManager::addTunableRecorder, jDialogTaskManager::removeTunableRecorder, TunableRecorder.class);
    registerServiceListener(bc, jPanelTunableMutator::addTunableHandlerFactory, jPanelTunableMutator::removeTunableHandlerFactory, GUITunableHandlerFactory.class);
    registerServiceListener(bc, jDialogTunableMutator::addTunableHandlerFactory, jDialogTunableMutator::removeTunableHandlerFactory, GUITunableHandlerFactory.class);
}

Example 17 with CyServiceRegistrar

use of org.cytoscape.service.util.CyServiceRegistrar in project cytoscape-impl by cytoscape.

the class CyActivator method start.

@Override
public void start(BundleContext bc) {
    final CyServiceRegistrar serviceRegistrar = getService(bc, CyServiceRegistrar.class);
    DataSourceManagerImpl dataSourceManager = new DataSourceManagerImpl();
    registerService(bc, dataSourceManager, DataSourceManager.class, new Properties());
    registerServiceListener(bc, dataSourceManager::addDataSource, dataSourceManager::removeDataSource, DataSource.class);
    BookmarkDataSourceBuilder bkBuilder = new BookmarkDataSourceBuilder(serviceRegistrar);
    final Set<DataSource> bkDataSources = bkBuilder.getDataSources();
    for (final DataSource ds : bkDataSources) registerService(bc, ds, DataSource.class, new Properties());
}

Example 18 with CyServiceRegistrar

use of org.cytoscape.service.util.CyServiceRegistrar in project cytoscape-impl by cytoscape.

the class CyActivator method start.

@Override
public void start(BundleContext bc) {
    final CyServiceRegistrar serviceRegistrar = getService(bc, CyServiceRegistrar.class);
    LockedVisualPropertiesManager lockedVisualPropertiesManager = new LockedVisualPropertiesManager(serviceRegistrar);
    CyGroupManagerImpl cyGroupManager = new CyGroupManagerImpl(serviceRegistrar);
    CyGroupFactoryImpl cyGroupFactory = new CyGroupFactoryImpl(cyGroupManager, lockedVisualPropertiesManager);
    registerService(bc, cyGroupManager, CyGroupManager.class);
    registerService(bc, cyGroupManager, AddedEdgesListener.class);
    registerService(bc, cyGroupManager, AboutToRemoveEdgesListener.class);
    registerService(bc, cyGroupFactory, CyGroupFactory.class);
    // Create the aggregation manager
    CyGroupAggregationManagerImpl cyAggMgr = new CyGroupAggregationManagerImpl(cyGroupManager);
    registerService(bc, cyAggMgr, CyGroupAggregationManager.class, new Properties());
    // Get our Settings object
    CyGroupSettingsImpl cyGroupSettings = new CyGroupSettingsImpl(cyGroupManager, cyAggMgr, serviceRegistrar);
    GroupIO groupIO = new GroupIO(cyGroupManager, lockedVisualPropertiesManager, cyGroupSettings);
    registerAllServices(bc, groupIO);
    // Register our settings menu
    CyGroupSettingsTaskFactory settingsFactory = new CyGroupSettingsTaskFactory(cyGroupManager, cyAggMgr, cyGroupSettings);
    Properties settingsProps = new Properties();
    settingsProps.setProperty(ID, "settingsFactory");
    settingsProps.setProperty(PREFERRED_MENU, "Edit.Preferences");
    settingsProps.setProperty(TITLE, "Group Preferences...");
    settingsProps.setProperty(MENU_GRAVITY, "4.0");
    settingsProps.setProperty(TOOL_BAR_GRAVITY, "4");
    settingsProps.setProperty(IN_TOOL_BAR, "false");
    registerService(bc, settingsFactory, TaskFactory.class, settingsProps);
    // Now register our node-specific settings menu
    CyGroupNodeSettingsTaskFactory nodeSettingsFactory = new CyGroupNodeSettingsTaskFactory(cyGroupManager, cyAggMgr, cyGroupSettings);
    settingsProps = new Properties();
    settingsProps.setProperty(ID, "groupNodeSettingsFactory");
    settingsProps.setProperty(PREFERRED_MENU, NODE_PREFERENCES_MENU);
    settingsProps.setProperty(MENU_GRAVITY, "-1");
    settingsProps.setProperty(TITLE, "Group Preferences...");
    settingsProps.setProperty(PREFERRED_ACTION, "NEW");
    settingsProps.setProperty(COMMAND, "group-node-settings");
    settingsProps.setProperty(COMMAND_NAMESPACE, "network-view");
    registerService(bc, nodeSettingsFactory, NodeViewTaskFactory.class, settingsProps);
    // Make the settings available to consumers
    registerService(bc, cyGroupSettings, GroupAddedListener.class, new Properties());
    registerService(bc, cyGroupSettings, NetworkAddedListener.class, new Properties());
    registerService(bc, cyGroupSettings, CyGroupSettingsManager.class, new Properties());
    registerService(bc, cyGroupSettings, PropertyUpdatedListener.class, new Properties());
    // Set up listener for node movement
    NodeChangeListener nodeChangeListener = new NodeChangeListener(cyGroupManager, cyGroupSettings);
    registerService(bc, nodeChangeListener, ViewChangedListener.class, new Properties());
    settingsProps = new Properties();
    settingsProps.setProperty(ID, "groupViewCollapseFactory");
    settingsProps.setProperty(TITLE, "Collapse Group View");
    settingsProps.setProperty(COMMAND, "groupViewCollapseFactory");
    settingsProps.setProperty(COMMAND_NAMESPACE, "network-view");
    settingsProps.setProperty(COMMAND_SUPPORTS_JSON, "true");
    GroupViewCollapseHandler gvcHandler = new GroupViewCollapseHandler(cyGroupManager, cyGroupSettings, nodeChangeListener);
    registerService(bc, gvcHandler, GroupAboutToCollapseListener.class, settingsProps);
    registerService(bc, gvcHandler, GroupAboutToBeDestroyedListener.class, settingsProps);
    registerService(bc, gvcHandler, GroupCollapsedListener.class, settingsProps);
    registerService(bc, gvcHandler, SessionLoadedListener.class, settingsProps);
    registerService(bc, gvcHandler, GroupAddedListener.class, settingsProps);
    registerService(bc, gvcHandler, GroupViewTypeChangedListener.class, settingsProps);
    GroupDataCollapseHandler gdcHandler = new GroupDataCollapseHandler(cyGroupManager, cyGroupSettings);
    registerService(bc, gdcHandler, GroupAboutToCollapseListener.class, new Properties());
    // Listen for double-click
    GroupViewDoubleClickListener gvsListener = new GroupViewDoubleClickListener(cyGroupManager, cyGroupSettings);
    Properties doubleClickProperties = new Properties();
    doubleClickProperties.setProperty(PREFERRED_ACTION, "OPEN");
    doubleClickProperties.setProperty(TITLE, "Expand/Collapse Group");
    registerService(bc, gvsListener, NodeViewTaskFactory.class, doubleClickProperties);
}

Example 19 with CyServiceRegistrar

use of org.cytoscape.service.util.CyServiceRegistrar in project cytoscape-impl by cytoscape.

the class CyActivator method start.

public void start(BundleContext bc) {
    CommandLineArgs args = getService(bc, CommandLineArgs.class);
    CyVersion cyVersion = getService(bc, CyVersion.class);
    CyShutdown cyShutdown = getService(bc, CyShutdown.class);
    StreamUtil streamUtil = getService(bc, StreamUtil.class);
    OpenSessionTaskFactory loadSession = getService(bc, OpenSessionTaskFactory.class);
    LoadNetworkFileTaskFactory networkFileLoader = getService(bc, LoadNetworkFileTaskFactory.class);
    LoadNetworkURLTaskFactory networkURLLoader = getService(bc, LoadNetworkURLTaskFactory.class);
    LoadVizmapFileTaskFactory visualStylesLoader = getService(bc, LoadVizmapFileTaskFactory.class);
    TaskManager<?, ?> taskManager = getService(bc, TaskManager.class);
    CyServiceRegistrar registrar = getService(bc, CyServiceRegistrar.class);
    CyProperty<Properties> props = (CyProperty<Properties>) getService(bc, CyProperty.class, "(cyPropertyName=cytoscape3.props)");
    StartupConfig sc = new StartupConfig(props.getProperties(), streamUtil, loadSession, networkFileLoader, networkURLLoader, visualStylesLoader, taskManager, registrar);
    Parser p = new Parser(args.getArgs(), cyShutdown, cyVersion, sc, props.getProperties());
    sc.start();
}

Example 20 with CyServiceRegistrar

use of org.cytoscape.service.util.CyServiceRegistrar in project cytoscape-impl by cytoscape.

the class VisualStyleTest method setUp.

@Before
@SuppressWarnings("unchecked")
public void setUp() throws Exception {
    NetworkViewTestSupport nvts = new NetworkViewTestSupport();
    network = nvts.getNetworkFactory().createNetwork();
    node1 = network.addNode();
    node2 = network.addNode();
    node3 = network.addNode();
    edge = network.addEdge(node1, node2, true);
    CyTable nodeTable = network.getDefaultNodeTable();
    nodeTable.createColumn(attrName, String.class, true);
    nodeTable.getRow(node1.getSUID()).set(attrName, "red");
    nodeTable.getRow(node2.getSUID()).set(attrName, "green");
    nodeTable.getRow(node3.getSUID()).set(attrName, "foo");
    networkView = nvts.getNetworkViewFactory().createNetworkView(network);
    // Create root node.
    final NullVisualProperty minimalRoot = new NullVisualProperty("MINIMAL_ROOT", "Minimal Root Visual Property");
    final BasicVisualLexicon minimalLex = new BasicVisualLexicon(minimalRoot);
    final Set<VisualLexicon> lexSet = new HashSet<VisualLexicon>();
    lexSet.add(minimalLex);
    final VisualMappingFunctionFactory ptFactory = mock(VisualMappingFunctionFactory.class);
    eventHelper = mock(CyEventHelper.class);
    final RenderingEngineFactory<CyNetwork> reFatory = mock(RenderingEngineFactory.class);
    when(reFatory.getVisualLexicon()).thenReturn(minimalLex);
    final NetworkViewRenderer nvRenderer = mock(NetworkViewRenderer.class);
    when(nvRenderer.getRenderingEngineFactory(NetworkViewRenderer.DEFAULT_CONTEXT)).thenReturn(reFatory);
    final CyApplicationManager appManager = mock(CyApplicationManager.class);
    when(appManager.getCurrentNetworkViewRenderer()).thenReturn(nvRenderer);
    final CyServiceRegistrar serviceRegistrar = mock(CyServiceRegistrar.class);
    when(serviceRegistrar.getService(CyEventHelper.class)).thenReturn(eventHelper);
    when(serviceRegistrar.getService(CyApplicationManager.class)).thenReturn(appManager);
    VisualProperty<NullDataType> rootVisualProperty = mock(VisualProperty.class);
    BasicVisualLexicon lexicon = new BasicVisualLexicon(rootVisualProperty);
    vpSet = new HashSet<VisualProperty<Paint>>();
    vpSet.add(BasicVisualLexicon.NODE_BORDER_PAINT);
    vpSet.add(BasicVisualLexicon.NODE_FILL_COLOR);
    dependency = new VisualPropertyDependency<Paint>("dep1", "Dep 1", vpSet, lexicon);
    final VisualStyleFactoryImpl visualStyleFactory = new VisualStyleFactoryImpl(serviceRegistrar, ptFactory);
    originalTitle = "Style 1";
    newTitle = "Style 2";
    style = visualStyleFactory.createVisualStyle(originalTitle);
    style.setDefaultValue(NODE_SIZE, DEF_NODE_SIZE);
    style.setDefaultValue(NODE_FILL_COLOR, DEF_NODE_COLOR);
    reset(eventHelper);
}