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Example 1 with EDGE_LINE_TYPE

use of org.cytoscape.view.presentation.property.BasicVisualLexicon.EDGE_LINE_TYPE in project EnrichmentMapApp by BaderLab.

the class EMStyleBuilder method setEdgeLineType.

private void setEdgeLineType(VisualStyle vs, EMStyleOptions options) {
    String col = CyEdge.INTERACTION;
    DiscreteMapping<String, LineType> dm = (DiscreteMapping<String, LineType>) dmFactory.createVisualMappingFunction(col, String.class, EDGE_LINE_TYPE);
    // Silence events fired by this mapping to prevent unnecessary style and view updates
    eventHelper.silenceEventSource(dm);
    try {
        LineType sigLineType = LineTypeVisualProperty.DOT;
        if (EDGE_LINE_TYPE.getRange().isDiscrete()) {
            DiscreteRange<LineType> range = (DiscreteRange<LineType>) EDGE_LINE_TYPE.getRange();
            Optional<LineType> first = range.values().stream().filter(v -> "MARQUEE_EQUAL".equalsIgnoreCase(v.getSerializableString())).findFirst();
            if (first.isPresent())
                sigLineType = first.get();
        }
        dm.putMapValue(Columns.EDGE_DATASET_VALUE_COMPOUND, LineTypeVisualProperty.SOLID);
        dm.putMapValue(Columns.EDGE_INTERACTION_VALUE_SIG, sigLineType);
    } finally {
        eventHelper.unsilenceEventSource(dm);
    }
    vs.addVisualMappingFunction(dm);
}
Also used : Color(java.awt.Color) NODE_SHAPE(org.cytoscape.view.presentation.property.BasicVisualLexicon.NODE_SHAPE) RECTANGLE(org.cytoscape.view.presentation.property.NodeShapeVisualProperty.RECTANGLE) NODE_BORDER_TRANSPARENCY(org.cytoscape.view.presentation.property.BasicVisualLexicon.NODE_BORDER_TRANSPARENCY) NodeShape(org.cytoscape.view.presentation.property.values.NodeShape) Inject(com.google.inject.Inject) EDGE_UNSELECTED_PAINT(org.cytoscape.view.presentation.property.BasicVisualLexicon.EDGE_UNSELECTED_PAINT) LineType(org.cytoscape.view.presentation.property.values.LineType) ColorBrewer(org.jcolorbrewer.ColorBrewer) View(org.cytoscape.view.model.View) CyCustomGraphics2(org.cytoscape.view.presentation.customgraphics.CyCustomGraphics2) NODE_TOOLTIP(org.cytoscape.view.presentation.property.BasicVisualLexicon.NODE_TOOLTIP) Discrete(org.baderlab.csplugins.enrichmentmap.CytoscapeServiceModule.Discrete) CyNetwork(org.cytoscape.model.CyNetwork) NODE_SIZE(org.cytoscape.view.presentation.property.BasicVisualLexicon.NODE_SIZE) NODE_FILL_COLOR(org.cytoscape.view.presentation.property.BasicVisualLexicon.NODE_FILL_COLOR) VisualStyleChangedEvent(org.cytoscape.view.vizmap.events.VisualStyleChangedEvent) BasicVisualLexicon(org.cytoscape.view.presentation.property.BasicVisualLexicon) RenderingEngineManager(org.cytoscape.view.presentation.RenderingEngineManager) VisualLexicon(org.cytoscape.view.model.VisualLexicon) Collectors(java.util.stream.Collectors) AbstractDataSet(org.baderlab.csplugins.enrichmentmap.model.AbstractDataSet) List(java.util.List) NETWORK_BACKGROUND_PAINT(org.cytoscape.view.presentation.property.BasicVisualLexicon.NETWORK_BACKGROUND_PAINT) EMDataSet(org.baderlab.csplugins.enrichmentmap.model.EMDataSet) Paint(java.awt.Paint) DIAMOND(org.cytoscape.view.presentation.property.NodeShapeVisualProperty.DIAMOND) Optional(java.util.Optional) NODE_LABEL(org.cytoscape.view.presentation.property.BasicVisualLexicon.NODE_LABEL) LineTypeVisualProperty(org.cytoscape.view.presentation.property.LineTypeVisualProperty) VisualStyle(org.cytoscape.view.vizmap.VisualStyle) ContinuousMapping(org.cytoscape.view.vizmap.mappings.ContinuousMapping) Passthrough(org.baderlab.csplugins.enrichmentmap.CytoscapeServiceModule.Passthrough) EDGE_LINE_TYPE(org.cytoscape.view.presentation.property.BasicVisualLexicon.EDGE_LINE_TYPE) EDGE_STROKE_UNSELECTED_PAINT(org.cytoscape.view.presentation.property.BasicVisualLexicon.EDGE_STROKE_UNSELECTED_PAINT) CyNode(org.cytoscape.model.CyNode) PassthroughMapping(org.cytoscape.view.vizmap.mappings.PassthroughMapping) EnrichmentMap(org.baderlab.csplugins.enrichmentmap.model.EnrichmentMap) EDGE_LABEL_TRANSPARENCY(org.cytoscape.view.presentation.property.BasicVisualLexicon.EDGE_LABEL_TRANSPARENCY) EDGE_WIDTH(org.cytoscape.view.presentation.property.BasicVisualLexicon.EDGE_WIDTH) ELLIPSE(org.cytoscape.view.presentation.property.NodeShapeVisualProperty.ELLIPSE) DiscreteMapping(org.cytoscape.view.vizmap.mappings.DiscreteMapping) NODE_BORDER_PAINT(org.cytoscape.view.presentation.property.BasicVisualLexicon.NODE_BORDER_PAINT) NODE_BORDER_WIDTH(org.cytoscape.view.presentation.property.BasicVisualLexicon.NODE_BORDER_WIDTH) Continuous(org.baderlab.csplugins.enrichmentmap.CytoscapeServiceModule.Continuous) NODE_TRANSPARENCY(org.cytoscape.view.presentation.property.BasicVisualLexicon.NODE_TRANSPARENCY) VisualMappingFunctionFactory(org.cytoscape.view.vizmap.VisualMappingFunctionFactory) CyEventHelper(org.cytoscape.event.CyEventHelper) DiscreteRange(org.cytoscape.view.model.DiscreteRange) NODE_LABEL_TRANSPARENCY(org.cytoscape.view.presentation.property.BasicVisualLexicon.NODE_LABEL_TRANSPARENCY) EDGE_TRANSPARENCY(org.cytoscape.view.presentation.property.BasicVisualLexicon.EDGE_TRANSPARENCY) VisualProperty(org.cytoscape.view.model.VisualProperty) ContinuousMappingPoint(org.cytoscape.view.vizmap.mappings.ContinuousMappingPoint) BoundaryRangeValues(org.cytoscape.view.vizmap.mappings.BoundaryRangeValues) CyNetworkView(org.cytoscape.view.model.CyNetworkView) VisualMappingFunction(org.cytoscape.view.vizmap.VisualMappingFunction) EMSignatureDataSet(org.baderlab.csplugins.enrichmentmap.model.EMSignatureDataSet) CyEdge(org.cytoscape.model.CyEdge) VisualStyleChangeRecord(org.cytoscape.view.vizmap.events.VisualStyleChangeRecord) DiscreteMapping(org.cytoscape.view.vizmap.mappings.DiscreteMapping) LineType(org.cytoscape.view.presentation.property.values.LineType) DiscreteRange(org.cytoscape.view.model.DiscreteRange)

Aggregations

Inject (com.google.inject.Inject)1 Color (java.awt.Color)1 Paint (java.awt.Paint)1 List (java.util.List)1 Optional (java.util.Optional)1 Collectors (java.util.stream.Collectors)1 Continuous (org.baderlab.csplugins.enrichmentmap.CytoscapeServiceModule.Continuous)1 Discrete (org.baderlab.csplugins.enrichmentmap.CytoscapeServiceModule.Discrete)1 Passthrough (org.baderlab.csplugins.enrichmentmap.CytoscapeServiceModule.Passthrough)1 AbstractDataSet (org.baderlab.csplugins.enrichmentmap.model.AbstractDataSet)1 EMDataSet (org.baderlab.csplugins.enrichmentmap.model.EMDataSet)1 EMSignatureDataSet (org.baderlab.csplugins.enrichmentmap.model.EMSignatureDataSet)1 EnrichmentMap (org.baderlab.csplugins.enrichmentmap.model.EnrichmentMap)1 CyEventHelper (org.cytoscape.event.CyEventHelper)1 CyEdge (org.cytoscape.model.CyEdge)1 CyNetwork (org.cytoscape.model.CyNetwork)1 CyNode (org.cytoscape.model.CyNode)1 CyNetworkView (org.cytoscape.view.model.CyNetworkView)1 DiscreteRange (org.cytoscape.view.model.DiscreteRange)1 View (org.cytoscape.view.model.View)1