Examples with ListSingleSelection org.cytoscape.work.util.ListSingleSelection used on opensource projects

Example 11 with ListSingleSelection

use of org.cytoscape.work.util.ListSingleSelection in project cytoscape-api by cytoscape.

the class AbstractCyNetworkReader method getTargetColumns.

private final ListSingleSelection<String> getTargetColumns(final CyNetwork network) {
    final CyTable selectedTable = network.getTable(CyNode.class, CyRootNetwork.SHARED_ATTRS);
    final List<String> colNames = new ArrayList<>();
    for (CyColumn col : selectedTable.getColumns()) {
        // Exclude SUID from the mapping key list
        if (!col.getName().equalsIgnoreCase(CyIdentifiable.SUID) && !col.getName().endsWith(".SUID") && (col.getType() == String.class || col.getType() == Integer.class || col.getType() == Long.class))
            colNames.add(col.getName());
    }
    if (colNames.isEmpty() || (colNames.size() == 1 && colNames.contains(CyRootNetwork.SHARED_NAME)))
        return new ListSingleSelection<>();
    sort(colNames);
    return new ListSingleSelection<>(colNames);
}

Example 12 with ListSingleSelection

use of org.cytoscape.work.util.ListSingleSelection in project cytoscape-impl by cytoscape.

the class NetworkCollectionHelper method getTargetColumns.

public ListSingleSelection<String> getTargetColumns(final CyNetwork network) {
    final CyTable selectedTable = network.getTable(CyNode.class, CyRootNetwork.SHARED_ATTRS);
    final List<String> colNames = new ArrayList<>();
    for (CyColumn col : selectedTable.getColumns()) {
        // Exclude SUID from the mapping key list
        if (!col.getName().equalsIgnoreCase(CyIdentifiable.SUID) && !col.getName().endsWith(".SUID") && (col.getType() == String.class || col.getType() == Integer.class || col.getType() == Long.class))
            colNames.add(col.getName());
    }
    if (colNames.isEmpty() || (colNames.size() == 1 && colNames.contains(CyRootNetwork.SHARED_NAME)))
        return new ListSingleSelection<>();
    sort(colNames);
    ListSingleSelection<String> targetColumns = new ListSingleSelection<>(colNames);
    if (targetColumns.getPossibleValues().contains(CyRootNetwork.SHARED_NAME))
        targetColumns.setSelectedValue(CyRootNetwork.SHARED_NAME);
    return targetColumns;
}

Example 13 with ListSingleSelection

use of org.cytoscape.work.util.ListSingleSelection in project cytoscape-impl by cytoscape.

the class NetworkCollectionHelper method init.

void init() {
    final CyApplicationManager appMgr = serviceRegistrar.getService(CyApplicationManager.class);
    final CyRootNetworkManager rootNetMgr = serviceRegistrar.getService(CyRootNetworkManager.class);
    // initialize the network Collection
    name2RootMap = getRootNetworkMap();
    final List<String> rootNames = new ArrayList<>();
    rootNames.addAll(name2RootMap.keySet());
    if (!rootNames.isEmpty()) {
        sort(rootNames);
        rootNames.add(0, CREATE_NEW_COLLECTION_STRING);
    }
    rootNetworkList = new ListSingleSelection<>(rootNames);
    final CyNetwork net = appMgr != null ? appMgr.getCurrentNetwork() : null;
    final CyRootNetwork rootNet = net != null ? rootNetMgr.getRootNetwork(net) : null;
    final String rootNetName = rootNet != null ? rootNet.getRow(rootNet).get(CyRootNetwork.NAME, String.class) : CREATE_NEW_COLLECTION_STRING;
    if (rootNames.contains(rootNetName))
        rootNetworkList.setSelectedValue(rootNetName);
    else if (rootNames.contains(CREATE_NEW_COLLECTION_STRING))
        rootNetworkList.setSelectedValue(CREATE_NEW_COLLECTION_STRING);
    if (rootNet != null)
        targetColumnList = getTargetColumns(rootNet);
    else
        targetColumnList = new ListSingleSelection<>();
    // initialize renderer list
    final List<NetworkViewRenderer> renderers = new ArrayList<>();
    final Set<NetworkViewRenderer> rendererSet = appMgr.getNetworkViewRendererSet();
    // so the combo-box does not appear to the user, since there is nothing to select anyway.
    if (rendererSet.size() > 1) {
        renderers.addAll(rendererSet);
        Collections.sort(renderers, new Comparator<NetworkViewRenderer>() {

            @Override
            public int compare(NetworkViewRenderer r1, NetworkViewRenderer r2) {
                return r1.toString().compareToIgnoreCase(r2.toString());
            }
        });
    }
    rendererList = new ListSingleSelection<>(renderers);
    final NetworkViewRenderer defViewRenderer = appMgr.getDefaultNetworkViewRenderer();
    if (defViewRenderer != null && renderers.contains(defViewRenderer))
        rendererList.setSelectedValue(defViewRenderer);
}

Example 14 with ListSingleSelection

use of org.cytoscape.work.util.ListSingleSelection in project cytoscape-impl by cytoscape.

the class LoadMultipleNetworksTask method init.

private void init() {
    // otherwise let the reader's tunables handle it.
    if (readers != null && readers.size() > 1) {
        // Initialize column list
        if (rootNetwork != null)
            setTargetColumnList(getTargetColumns(rootNetwork));
        else
            setTargetColumnList(new ListSingleSelection<>());
        // Initialize renderer list
        final List<NetworkViewRenderer> renderers = new ArrayList<>();
        NetworkViewRenderer defViewRenderer = null;
        final CyApplicationManager applicationManager = serviceRegistrar.getService(CyApplicationManager.class);
        final Set<NetworkViewRenderer> rendererSet = applicationManager.getNetworkViewRendererSet();
        // so the combo-box does not appear to the user, since there is nothing to select anyway.
        if (rendererSet.size() > 1) {
            renderers.addAll(rendererSet);
            Collections.sort(renderers, new Comparator<NetworkViewRenderer>() {

                @Override
                public int compare(NetworkViewRenderer r1, NetworkViewRenderer r2) {
                    return r1.toString().compareToIgnoreCase(r2.toString());
                }
            });
        }
        defViewRenderer = applicationManager.getDefaultNetworkViewRenderer();
        rendererList = new ListSingleSelection<>(renderers);
        if (defViewRenderer != null && renderers.contains(defViewRenderer))
            rendererList.setSelectedValue(defViewRenderer);
    }
}

Example 15 with ListSingleSelection

use of org.cytoscape.work.util.ListSingleSelection in project cytoscape-impl by cytoscape.

the class LoadMultipleNetworksTask method run.

@Override
public void run(TaskMonitor taskMonitor) throws Exception {
    this.taskMonitor = taskMonitor;
    if (readers == null && readers.isEmpty())
        throw new IllegalArgumentException("No network reader specified.");
    taskMonitor.setTitle("Import Networks");
    taskMonitor.setProgress(0.0);
    final String rootNetName = rootNetwork != null ? rootNetwork.getRow(rootNetwork).get(CyRootNetwork.NAME, String.class) : null;
    final String targetColumn = targetColumnList != null ? targetColumnList.getSelectedValue() : null;
    final NetworkViewRenderer renderer = rendererList != null ? rendererList.getSelectedValue() : null;
    final float total = readers.size();
    int count = 1;
    for (Entry<String, CyNetworkReader> entry : readers.entrySet()) {
        if (cancelled)
            return;
        final CyNetworkReader r = entry.getValue();
        if (r instanceof AbstractCyNetworkReader) {
            AbstractCyNetworkReader ar = (AbstractCyNetworkReader) r;
            if (rootNetName != null) {
                ListSingleSelection<String> ls = new ListSingleSelection<>(Collections.singletonList(rootNetName));
                ls.setSelectedValue(rootNetName);
                ar.setRootNetworkList(ls);
            } else {
                // Force "create new collection"
                ar.setRootNetworkList(new ListSingleSelection<>(Collections.emptyList()));
                ar.setTargetColumnList(new ListSingleSelection<>(Collections.emptyList()));
            }
            if (targetColumn != null) {
                ListSingleSelection<String> ls = new ListSingleSelection<>(Collections.singletonList(targetColumn));
                ls.setSelectedValue(targetColumn);
                ar.setTargetColumnList(ls);
            }
            if (renderer != null) {
                ListSingleSelection<NetworkViewRenderer> ls = new ListSingleSelection<>(Collections.singletonList(renderer));
                ls.setSelectedValue(renderer);
                ar.setNetworkViewRendererList(ls);
            }
        }
        name = entry.getKey();
        loadNetwork(r);
        taskMonitor.setProgress(count / total);
        count++;
    }
}