Examples with ARGUMENT_TYPE_ID org.eol.globi.data.DatasetImporterForTSV.ARGUMENT_TYPE_ID used on opensource projects

Example 1 with ARGUMENT_TYPE_ID

use of org.eol.globi.data.DatasetImporterForTSV.ARGUMENT_TYPE_ID in project eol-globi-data by jhpoelen.

the class InteractionImporterTest method importRefutingClaim.

@Test
public void importRefutingClaim() throws StudyImporterException {
    final InteractionListener listener = getAssertingInteractionImporter();
    final TreeMap<String, String> link = new TreeMap<>();
    link.put(SOURCE_TAXON_NAME, "donald");
    link.put(SOURCE_TAXON_ID, "duck");
    link.put(DatasetImporterForTSV.INTERACTION_TYPE_ID, "http://purl.obolibrary.org/obo/RO_0002470");
    link.put(TARGET_TAXON_NAME, "mini");
    link.put(TARGET_TAXON_ID, "mouse");
    link.put(ARGUMENT_TYPE_ID, "https://en.wiktionary.org/wiki/refute");
    link.put(REFERENCE_ID, "123");
    link.put(DATASET_CITATION, "some source ref");
    link.put(REFERENCE_CITATION, "");
    link.put(REFERENCE_DOI, "doi:10.12/34");
    listener.on(link);
    AtomicBoolean foundSpecimen = new AtomicBoolean(false);
    RelationshipListener relHandler = relationship -> {
        final SpecimenNode someSpecimen = new SpecimenNode(relationship.getEndNode());
        assertTrue(someSpecimen.getUnderlyingNode().hasRelationship(Direction.INCOMING, NodeUtil.asNeo4j(RelTypes.REFUTES)));
        assertFalse(someSpecimen.getUnderlyingNode().hasRelationship(Direction.INCOMING, NodeUtil.asNeo4j(RelTypes.COLLECTED)));
        foundSpecimen.set(true);
    };
    handleRelations(relHandler, RelTypes.REFUTES);
    assertThat(foundSpecimen.get(), is(true));
}