Examples with SOURCE_SEX_ID org.eol.globi.data.DatasetImporterForTSV.SOURCE_SEX_ID used on opensource projects

Example 1 with SOURCE_SEX_ID

use of org.eol.globi.data.DatasetImporterForTSV.SOURCE_SEX_ID in project eol-globi-data by jhpoelen.

the class InteractionImporterTest method importWithSex.

@Test
public void importWithSex() throws StudyImporterException {
    final InteractionListener listener = getAssertingInteractionImporter();
    final TreeMap<String, String> link = new TreeMap<>();
    link.put(SOURCE_TAXON_NAME, "donald");
    link.put(SOURCE_SEX_NAME, "female");
    link.put(SOURCE_SEX_ID, "some:female");
    link.put(DatasetImporterForTSV.INTERACTION_TYPE_ID, InteractType.ATE.getIRI());
    link.put(TARGET_TAXON_NAME, "mini");
    link.put(TARGET_SEX_NAME, "male");
    link.put(TARGET_SEX_ID, "some:male");
    link.put(DATASET_CITATION, "some source ref");
    link.put(REFERENCE_ID, "123");
    link.put(REFERENCE_CITATION, "");
    listener.on(link);
    AtomicInteger foundSpecimen = new AtomicInteger(0);
    RelationshipListener someListener = relationship -> {
        final SpecimenNode someSpecimen = new SpecimenNode(relationship.getEndNode());
        assertTrue(someSpecimen.getUnderlyingNode().hasRelationship(Direction.INCOMING, NodeUtil.asNeo4j(RelTypes.COLLECTED)));
        assertTrue(someSpecimen.getUnderlyingNode().hasRelationship(NodeUtil.asNeo4j(InteractType.ATE)));
        if (someSpecimen.getUnderlyingNode().hasRelationship(Direction.OUTGOING, NodeUtil.asNeo4j(InteractType.ATE))) {
            assertThat(someSpecimen.getSex().getName(), is("female"));
            assertThat(someSpecimen.getSex().getId(), is("some:female"));
        } else {
            assertThat(someSpecimen.getSex().getName(), is("male"));
            assertThat(someSpecimen.getSex().getId(), is("some:male"));
        }
        foundSpecimen.incrementAndGet();
    };
    handleRelations(someListener, RelTypes.COLLECTED);
    assertThat(foundSpecimen.get(), is(2));
}